IslandPathversion 1.0

IslandPath Analysis: Wolbachia endosymbiont strain TRS of Brugia malayi



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.55 STD DEV: 2.88
Wolbachia endosymbiont strain TRS of Brugia malayi, complete genome - 1..1080084
805 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
687	 36.30	0	898448..898582	+	44	58584948	rpmH	Wbm0691	-	50S ribosomal protein L34
688	 27.78	-2	898575..898934	+	119	58584949	-	Wbm0692	-	RNase P protein component
689	 30.47	-1	899021..899299	+	92	58584950	-	Wbm0693	-	hypothetical protein
690	 31.16	-1	902744..903757	+	337	58584951	-	Wbm0694	-	TPR repeat-containing methyltransferase
691	 36.53	0	903812..905596	+	594	58584952	-	Wbm0695	-	ribonucleotide-diphosphate reductase subunit alpha
692	 31.41	-1	905597..906064	+	155	58584953	-	Wbm0696	-	endonuclease
693	 34.15	0	906111..906599	-	162	58584954	-	Wbm0697	-	Holliday junction resolvasome, endonuclease subunit, RuvC
694	 34.68	0	906600..907418	-	272	58584955	-	Wbm0698	-	cytochrome c oxidase, subunit 3
695	 37.77	+1	908951..910123	-	390	58584956	-	Wbm0699	-	S-adenosylmethionine synthetase
696	 35.66	0	910282..910539	-	85	58584957	rpmA	Wbm0700	-	50S ribosomal protein L27
697	 33.00	0	910550..910852	-	100	58584958	rplU	Wbm0701	-	50S ribosomal protein L21
698	 29.67	-1	912546..912791	-	81	58584959	-	Wbm0702	-	hypothetical protein
699	 39.19	+1	913430..913651	-	73	58584960	-	Wbm0703	-	hypothetical protein
700	 37.33	0	914478..915902	-	474	58584961	gatB	Wbm0704	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
701	 33.79	0	916600..917472	+	290	58584962	-	Wbm0705	-	F0F1 ATP synthase subunit gamma
702	 33.56	0	917490..918824	+	444	58584963	-	Wbm0706	-	hypothetical protein
703	 34.51	0	919000..919254	+	84	58584964	-	Wbm0707	-	cold shock protein
704	 39.04	+1	919298..920524	+	408	58584965	-	Wbm0708	-	superfamily II DNA/RNA helicase
705	 37.09	0	922687..923511	-	274	58584966	-	Wbm0709	-	coproporphyrinogen III oxidase
706	 31.20	-1	923625..926105	+	826	58584967	-	Wbm0710	-	signal transduction histidine kinase and receiver
707	 35.85	0	929613..930962	-	449	58584968	-	Wbm0711	-	DNA recombination protein rmuC-like protein
708	 34.81	0	930994..931398	-	134	58584969	-	Wbm0712	-	hypothetical protein
709	 29.43	-1	934248..934529	+	93	58584970	-	Wbm0713	-	hypothetical protein
710	 33.61	0	936355..937788	-	477	58584971	-	Wbm0714	-	protein kinase, AarF
711	 32.52	0	937785..938525	-	246	58584972	-	Wbm0715	-	ABC-type Zn2+ transport systems, ATPase component
712	 30.63	-1	938664..939404	+	246	58584973	-	Wbm0716	-	ABC-type Zn2+ transport system, periplasmic component
713	 34.29	0	939444..939863	-	139	58584974	-	Wbm0717	-	nucleoside diphosphate kinase
714	 33.33	0	939974..940726	+	250	58584975	-	Wbm0718	-	hypothetical protein
715	 36.36	0	940727..941749	+	340	58584976	hemH	Wbm0719	-	ferrochelatase
716	 32.98	0	941827..942681	+	284	58584977	-	Wbm0720	-	hypothetical protein
717	 33.33	0	942691..943851	-	386	58584978	-	Wbm0721	-	glutamate-cysteine ligase
718	 36.72	0	943982..944512	+	176	58584979	-	Wbm0722	-	ATP-dependent protease peptidase subunit
719	 36.02	0	944514..946004	+	496	58584980	hslU	Wbm0723	-	ATP-dependent protease ATP-binding subunit
720	 31.96	0	947379..947669	-	96	58584981	-	Wbm0724	-	hypothetical protein
721	 34.12	0	948160..950709	+	849	58584982	-	Wbm0725	-	DNA polymerase I
722	 33.15	0	951311..952390	+	359	58584983	-	Wbm0726	-	hypothetical protein
723	 37.11	0	952385..953812	-	475	58584984	-	Wbm0727	-	Zn-dependent protease TldD
724	 32.49	0	956642..957349	+	235	58584985	-	Wbm0728	-	uroporphyrinogen-III synthase
725	 35.63	0	957349..958131	+	260	58584986	-	Wbm0729	-	exonuclease III
726	 30.74	-1	958816..959817	+	333	58584987	-	Wbm0730	-	permease
727	 30.03	-1	959940..960575	+	211	58584988	-	Wbm0731	-	DNA replication initiation ATPase
728	 32.42	0	960947..961933	+	328	58584989	-	Wbm0732	-	site-specific recombinase XerD
729	 34.20	0	962136..962711	+	191	58584990	-	Wbm0733	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
730	 32.96	0	962775..963044	+	89	58584991	rpsT	Wbm0734	-	30S ribosomal protein S20
731	 35.41	0	963110..964360	+	416	58584992	-	Wbm0735	-	citrate synthase
732	 33.23	0	965180..966118	-	312	58584993	-	Wbm0736	-	FKBP-type peptidyl-prolyl cis-trans isomerase domain-containing protein
733	 35.62	0	966111..967028	-	305	58584994	-	Wbm0737	-	geranylgeranyl pyrophosphate synthase
734	 33.33	0	967179..967445	+	88	58584995	-	Wbm0738	-	Acyl carrier protein
735	 37.19	0	967452..968720	+	422	58584996	-	Wbm0739	-	3-oxoacyl-(acyl-carrier-protein) synthase
736	 36.54	0	968818..970095	+	425	58584997	-	Wbm0740	-	UDP-N-acetylglucosamine enolpyruvyl transferase
737	 33.79	0	970105..970974	+	289	58584998	thyX	Wbm0741	-	FAD-dependent thymidylate synthase
738	 34.77	0	971041..973131	-	696	58584999	-	Wbm0742	-	extracellular metallopeptidase
739	 31.22	-1	973934..974122	-	62	58585000	-	Wbm0743	-	hypothetical protein
740	 39.65	+1	974465..974749	+	94	58585001	-	Wbm0744	-	hypothetical protein
741	 35.71	0	976010..978370	+	786	58585002	-	Wbm0745	-	primosomal protein N'
742	 36.47	0	978928..979533	+	201	58585003	-	Wbm0746	-	recombinational DNA repair protein RecR
743	 36.56	0	981613..982884	-	423	58585004	-	Wbm0747	-	branched-chain alpha-keto acid dehydrogenase subunit E2
744	 36.36	0	983225..983653	-	142	58585005	-	Wbm0748	-	hypothetical protein
745	 34.76	0	983877..986672	-	931	58585006	-	Wbm0749	-	hypothetical protein
746	 32.19	0	986653..989007	-	784	58585007	-	Wbm0750	-	Type IV secretory pathway, VirB4 components
747	 32.28	0	989038..989415	-	125	58585008	-	Wbm0751	-	hypothetical protein
748	 33.82	0	989526..990761	-	411	58585009	-	Wbm0752	-	hypothetical protein
749	 38.42	+1	990873..991913	-	346	58585010	-	Wbm0753	-	trans-2-enoyl-ACP reductase, FabK
750	 31.22	-1	991919..992392	-	157	58585011	-	Wbm0754	-	cytochrome B561
751	 36.75	0	994435..995340	-	301	58585012	-	Wbm0755	-	Signal recognition particle GTPase
752	 35.88	0	995525..995917	+	130	58585013	-	Wbm0756	-	scaffold protein
753	 33.09	0	995924..996328	+	134	58585014	-	Wbm0757	-	HesB/YadR/YfhF family protein
754	 31.36	-1	996321..996776	+	151	58585015	-	Wbm0758	-	DnaJ-domain-containing protein
755	 34.64	0	996754..998511	+	585	58585016	-	Wbm0759	-	molecular chaperone, DnaK
756	 35.11	0	998514..999131	-	205	58585017	-	Wbm0760	-	Signal peptidase I
757	 31.09	-1	999169..999480	-	103	58585018	-	Wbm0761	-	hypothetical protein
758	 32.37	0	999707..1000636	+	309	58585019	-	Wbm0762	-	permease
759	 37.86	+1	1000701..1002137	-	478	58585020	-	Wbm0763	-	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
760	 36.28	0	1002821..1005199	-	792	58585021	-	Wbm0764	-	DNA gyrase, topoisomerase II, B subunit, GyrB
761	 33.67	0	1006318..1006911	-	197	58585022	-	Wbm0765	-	hypothetical protein
762	 28.57	-2	1006999..1007334	-	111	58585023	-	Wbm0766	-	hypothetical protein
763	 37.27	0	1007541..1009166	-	541	58585024	-	Wbm0767	-	hypothetical protein
764	 34.30	0	1009621..1010658	+	345	58585025	-	Wbm0768	-	membrane protease subunit stomatin/prohibitin-like protein
765	 31.39	-1	1010661..1011533	+	290	58585026	-	Wbm0769	-	membrane protease subunit stomatin/prohibitin-like protein
766	 34.21	0	1011537..1013027	+	496	58585027	-	Wbm0770	-	trypsin-like serine protease
767	 33.70	0	1013958..1016159	-	733	58585028	-	Wbm0771	-	hypothetical protein
768	 38.11	+1	1016504..1017967	-	487	58585029	-	Wbm0772	-	hypothetical protein
769	 37.77	+1	1018068..1020005	-	645	58585030	-	Wbm0773	-	excinuclease ABC subunit B
770	 38.04	+1	1020088..1020852	-	254	58585031	-	Wbm0774	-	cytochrome c1
771	 36.19	0	1020852..1022078	-	408	58585032	-	Wbm0775	-	cytochrome b subunit of the bc complex
772	 32.26	0	1022508..1022975	+	155	58585033	-	Wbm0776	-	hypothetical protein
773	 33.90	0	1026192..1027070	+	292	58585034	-	Wbm0777	-	porphobilinogen deaminase
774	 37.73	+1	1027061..1027948	+	295	58585035	-	Wbm0778	-	UDP-N-acetylmuramate dehydrogenase
775	 31.84	0	1027974..1028240	-	88	58585036	-	Wbm0779	-	hypothetical protein
776	 34.29	0	1028579..1028788	-	69	58585037	-	Wbm0780	-	hypothetical protein
777	 35.11	0	1029578..1030141	+	187	58585038	-	Wbm0781	-	hypothetical protein
778	 37.83	+1	1030146..1031435	+	429	58585039	ispG	Wbm0782	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
779	 30.60	-1	1034634..1034816	-	60	58585040	-	Wbm0783	-	hypothetical protein
780	 34.97	0	1035157..1035339	-	60	58585041	-	Wbm0784	-	hypothetical protein
781	 36.71	0	1035924..1037048	+	374	58585042	-	Wbm0785	-	DnaJ-like molecular chaperone
782	 36.76	0	1037757..1040324	+	855	58585043	valS	Wbm0786	-	valyl-tRNA synthetase
783	 37.17	0	1042188..1042865	+	225	58585044	-	Wbm0787	-	orotidine-5'-phosphate decarboxylase
784	 35.16	0	1044453..1045934	+	493	58585045	secD	Wbm0788	-	preprotein translocase subunit SecD
785	 34.26	0	1046641..1047825	+	394	58585046	-	Wbm0789	-	Na+/H+-dicarboxylate symporter
786	 36.80	0	1047828..1048433	+	201	58585047	pyrE	Wbm0790	-	orotate phosphoribosyltransferase
34.55	MEAN

2.88	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.