IslandPathversion 1.0

IslandPath Analysis: Wolbachia endosymbiont strain TRS of Brugia malayi



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.55 STD DEV: 2.88
Wolbachia endosymbiont strain TRS of Brugia malayi, complete genome - 1..1080084
805 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
648	 30.94	-1	852674..853510	-	278	58584909	-	Wbm0652	-	transcription antiterminator
649	 41.43	+2	853808..854980	-	390	58584910	-	Wbm0653	-	elongation factor Tu
650	 36.28	0	855331..856482	-	383	58584911	-	Wbm0654	-	carbamoyl phosphate synthase small subunit
651	 33.53	0	856685..857191	+	168	58584912	-	Wbm0655	-	hypothetical protein
652	 35.79	0	857276..858169	-	297	58584913	-	Wbm0656	-	methionyl-tRNA formyltransferase
653	 38.80	+1	858212..858577	-	121	58584914	rplT	Wbm0657	-	50S ribosomal protein L20
654	 34.34	0	858598..858795	-	65	58584915	-	Wbm0658	-	ribosomal protein L35
655	 32.46	0	858918..859373	-	151	58584916	-	Wbm0659	-	hypothetical protein
656	 29.17	-1	859569..859904	-	111	58584917	-	Wbm0660	-	transcriptional regulator
657	 31.39	-1	859901..860209	-	102	58584918	-	Wbm0661	-	nucleoid DNA-binding protein
658	 34.87	0	863466..863660	-	64	58584919	-	Wbm0662	-	hypothetical protein
659	 35.28	0	863784..864398	-	204	58584920	rpsD	Wbm0663	-	30S ribosomal protein S4
660	 39.24	+1	864536..866500	+	654	58584921	-	Wbm0664	-	transketolase
661	 32.43	0	867240..867572	+	110	58584922	-	Wbm0665	-	hypothetical protein
662	 40.04	+1	868527..869525	+	332	58584923	-	Wbm0666	-	pyruvate dehydrogenase subunit beta
663	 37.95	+1	870048..871844	-	598	58584924	-	Wbm0667	-	GTP-binding protein LepA
664	 34.06	0	871925..873295	-	456	58584925	-	Wbm0668	-	malonyl-CoA decarboxylase
665	 34.28	0	876928..877245	-	105	58584926	-	Wbm0669	-	hypothetical protein
666	 37.20	0	877313..878062	-	249	58584927	-	Wbm0670	-	hypothetical protein
667	 34.59	0	878128..878841	-	237	58584928	-	Wbm0671	-	DNA uptake lipoprotein
668	 34.15	0	879419..880402	-	327	58584929	-	Wbm0672	-	hypothetical protein
669	 34.25	0	880511..881053	-	180	58584930	-	Wbm0673	-	phosphatidylglycerophosphate synthase
670	 39.41	+1	881171..882520	+	449	58584931	-	Wbm0674	-	malic enzyme
671	 31.51	-1	882599..882817	+	72	58584932	-	Wbm0675	-	stress-induced morphogen, BolA
672	 31.78	0	882834..883154	+	106	58584933	-	Wbm0676	-	glutaredoxin-like protein
673	 34.88	0	884576..885352	+	258	58584934	-	Wbm0677	-	ABC-type spermidine/putrescine transport system, ATPase component
674	 35.71	0	885487..885654	+	55	58584935	-	Wbm0678	-	Sec-independent protein secretion pathway component, TatA
675	 37.44	+1	885803..886459	+	218	58584936	-	Wbm0679	-	ABC transporter permease
676	 34.64	0	886523..887824	+	433	58584937	-	Wbm0680	-	cysteinyl-tRNA synthetase
677	 32.61	0	887831..888247	+	138	58584938	-	Wbm0681	-	hypothetical protein
678	 28.57	-2	888311..888625	-	104	58584939	-	Wbm0682	-	hypothetical protein
679	 37.04	0	890024..890239	-	71	58584940	-	Wbm0683	-	hypothetical protein
680	 34.33	0	890764..891963	-	399	58584941	pgk	Wbm0684	-	phosphoglycerate kinase
681	 36.96	0	892002..893021	-	339	58584942	-	Wbm0685	-	thioredoxin reductase
682	 35.35	0	893933..894577	-	214	58584943	-	Wbm0686	-	putative translaldolase
683	 38.70	+1	894579..894839	-	86	58584944	-	Wbm0687	-	hypothetical protein
684	 31.85	0	895333..895668	-	111	58584945	-	Wbm0688	-	F0F1-type ATP synthase, epsilon subunit
685	 37.56	+1	895674..897140	-	488	58584946	-	Wbm0689	-	F0F1 ATP synthase subunit beta
686	 34.27	0	897224..898075	-	283	58584947	-	Wbm0690	-	ABC-type phosphate transport system, permease component
687	 36.30	0	898448..898582	+	44	58584948	rpmH	Wbm0691	-	50S ribosomal protein L34
688	 27.78	-2	898575..898934	+	119	58584949	-	Wbm0692	-	RNase P protein component
689	 30.47	-1	899021..899299	+	92	58584950	-	Wbm0693	-	hypothetical protein
690	 31.16	-1	902744..903757	+	337	58584951	-	Wbm0694	-	TPR repeat-containing methyltransferase
691	 36.53	0	903812..905596	+	594	58584952	-	Wbm0695	-	ribonucleotide-diphosphate reductase subunit alpha
692	 31.41	-1	905597..906064	+	155	58584953	-	Wbm0696	-	endonuclease
693	 34.15	0	906111..906599	-	162	58584954	-	Wbm0697	-	Holliday junction resolvasome, endonuclease subunit, RuvC
694	 34.68	0	906600..907418	-	272	58584955	-	Wbm0698	-	cytochrome c oxidase, subunit 3
695	 37.77	+1	908951..910123	-	390	58584956	-	Wbm0699	-	S-adenosylmethionine synthetase
696	 35.66	0	910282..910539	-	85	58584957	rpmA	Wbm0700	-	50S ribosomal protein L27
697	 33.00	0	910550..910852	-	100	58584958	rplU	Wbm0701	-	50S ribosomal protein L21
698	 29.67	-1	912546..912791	-	81	58584959	-	Wbm0702	-	hypothetical protein
699	 39.19	+1	913430..913651	-	73	58584960	-	Wbm0703	-	hypothetical protein
700	 37.33	0	914478..915902	-	474	58584961	gatB	Wbm0704	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
701	 33.79	0	916600..917472	+	290	58584962	-	Wbm0705	-	F0F1 ATP synthase subunit gamma
702	 33.56	0	917490..918824	+	444	58584963	-	Wbm0706	-	hypothetical protein
703	 34.51	0	919000..919254	+	84	58584964	-	Wbm0707	-	cold shock protein
704	 39.04	+1	919298..920524	+	408	58584965	-	Wbm0708	-	superfamily II DNA/RNA helicase
705	 37.09	0	922687..923511	-	274	58584966	-	Wbm0709	-	coproporphyrinogen III oxidase
706	 31.20	-1	923625..926105	+	826	58584967	-	Wbm0710	-	signal transduction histidine kinase and receiver
707	 35.85	0	929613..930962	-	449	58584968	-	Wbm0711	-	DNA recombination protein rmuC-like protein
708	 34.81	0	930994..931398	-	134	58584969	-	Wbm0712	-	hypothetical protein
709	 29.43	-1	934248..934529	+	93	58584970	-	Wbm0713	-	hypothetical protein
710	 33.61	0	936355..937788	-	477	58584971	-	Wbm0714	-	protein kinase, AarF
711	 32.52	0	937785..938525	-	246	58584972	-	Wbm0715	-	ABC-type Zn2+ transport systems, ATPase component
712	 30.63	-1	938664..939404	+	246	58584973	-	Wbm0716	-	ABC-type Zn2+ transport system, periplasmic component
713	 34.29	0	939444..939863	-	139	58584974	-	Wbm0717	-	nucleoside diphosphate kinase
714	 33.33	0	939974..940726	+	250	58584975	-	Wbm0718	-	hypothetical protein
715	 36.36	0	940727..941749	+	340	58584976	hemH	Wbm0719	-	ferrochelatase
716	 32.98	0	941827..942681	+	284	58584977	-	Wbm0720	-	hypothetical protein
717	 33.33	0	942691..943851	-	386	58584978	-	Wbm0721	-	glutamate-cysteine ligase
718	 36.72	0	943982..944512	+	176	58584979	-	Wbm0722	-	ATP-dependent protease peptidase subunit
719	 36.02	0	944514..946004	+	496	58584980	hslU	Wbm0723	-	ATP-dependent protease ATP-binding subunit
720	 31.96	0	947379..947669	-	96	58584981	-	Wbm0724	-	hypothetical protein
721	 34.12	0	948160..950709	+	849	58584982	-	Wbm0725	-	DNA polymerase I
722	 33.15	0	951311..952390	+	359	58584983	-	Wbm0726	-	hypothetical protein
723	 37.11	0	952385..953812	-	475	58584984	-	Wbm0727	-	Zn-dependent protease TldD
724	 32.49	0	956642..957349	+	235	58584985	-	Wbm0728	-	uroporphyrinogen-III synthase
725	 35.63	0	957349..958131	+	260	58584986	-	Wbm0729	-	exonuclease III
726	 30.74	-1	958816..959817	+	333	58584987	-	Wbm0730	-	permease
727	 30.03	-1	959940..960575	+	211	58584988	-	Wbm0731	-	DNA replication initiation ATPase
728	 32.42	0	960947..961933	+	328	58584989	-	Wbm0732	-	site-specific recombinase XerD
729	 34.20	0	962136..962711	+	191	58584990	-	Wbm0733	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
730	 32.96	0	962775..963044	+	89	58584991	rpsT	Wbm0734	-	30S ribosomal protein S20
731	 35.41	0	963110..964360	+	416	58584992	-	Wbm0735	-	citrate synthase
732	 33.23	0	965180..966118	-	312	58584993	-	Wbm0736	-	FKBP-type peptidyl-prolyl cis-trans isomerase domain-containing protein
733	 35.62	0	966111..967028	-	305	58584994	-	Wbm0737	-	geranylgeranyl pyrophosphate synthase
734	 33.33	0	967179..967445	+	88	58584995	-	Wbm0738	-	Acyl carrier protein
735	 37.19	0	967452..968720	+	422	58584996	-	Wbm0739	-	3-oxoacyl-(acyl-carrier-protein) synthase
736	 36.54	0	968818..970095	+	425	58584997	-	Wbm0740	-	UDP-N-acetylglucosamine enolpyruvyl transferase
737	 33.79	0	970105..970974	+	289	58584998	thyX	Wbm0741	-	FAD-dependent thymidylate synthase
738	 34.77	0	971041..973131	-	696	58584999	-	Wbm0742	-	extracellular metallopeptidase
739	 31.22	-1	973934..974122	-	62	58585000	-	Wbm0743	-	hypothetical protein
740	 39.65	+1	974465..974749	+	94	58585001	-	Wbm0744	-	hypothetical protein
741	 35.71	0	976010..978370	+	786	58585002	-	Wbm0745	-	primosomal protein N'
742	 36.47	0	978928..979533	+	201	58585003	-	Wbm0746	-	recombinational DNA repair protein RecR
743	 36.56	0	981613..982884	-	423	58585004	-	Wbm0747	-	branched-chain alpha-keto acid dehydrogenase subunit E2
744	 36.36	0	983225..983653	-	142	58585005	-	Wbm0748	-	hypothetical protein
745	 34.76	0	983877..986672	-	931	58585006	-	Wbm0749	-	hypothetical protein
746	 32.19	0	986653..989007	-	784	58585007	-	Wbm0750	-	Type IV secretory pathway, VirB4 components
747	 32.28	0	989038..989415	-	125	58585008	-	Wbm0751	-	hypothetical protein
34.55	MEAN

2.88	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.