IslandPathversion 1.0

IslandPath Analysis: Wolbachia endosymbiont strain TRS of Brugia malayi



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.55 STD DEV: 2.88
Wolbachia endosymbiont strain TRS of Brugia malayi, complete genome - 1..1080084
805 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
570	 34.86	0	752085..752543	-	152	58584831	rplM	Wbm0574	-	50S ribosomal protein L13
571	 33.50	0	752673..753908	+	411	58584832	-	Wbm0575	-	Outer membrane protein
572	 32.25	0	753928..754296	+	122	58584833	-	Wbm0576	-	hypothetical protein
573	 32.26	0	754520..755170	+	216	58584834	-	Wbm0577	-	23S rRNA methylase
574	 31.17	-1	755188..755835	-	215	58584835	-	Wbm0578	-	ABC-type transport system involved in cytochrome c biogenesis, permease component
575	 33.07	0	755942..756325	+	127	58584836	-	Wbm0579	-	DnaK suppressor protein
576	 35.54	0	756340..756927	-	195	58584837	-	Wbm0580	-	guanylate kinase
577	 31.41	-1	756979..758799	-	606	58584838	-	Wbm0581	-	pentapeptide repeat-containing protein
578	 32.89	0	758774..760114	-	446	58584839	-	Wbm0582	-	ankyrin repeat-containing protein
579	 37.40	0	760611..761126	-	171	58584840	-	Wbm0583	-	inorganic pyrophosphatase
580	 34.76	0	761701..762192	-	163	58584841	-	Wbm0584	-	ubiquinone biosynthesis protein COQ7
581	 33.72	0	762206..762718	-	170	58584842	-	Wbm0585	-	disulfide bond formation protein DsbB
582	 35.31	0	762744..764156	-	470	58584843	engA	Wbm0586	-	GTP-binding protein EngA
583	 33.81	0	764294..765346	+	350	58584844	-	Wbm0587	-	hypothetical protein
584	 35.17	0	765454..766980	+	508	58584845	-	Wbm0588	-	Acetyl-CoA carboxylase, carboxyltransferase component
585	 32.35	0	767236..768051	+	271	58584846	-	Wbm0589	-	formamidopyrimidine-DNA glycosylase
586	 33.12	0	768732..769190	-	152	58584847	-	Wbm0590	-	hypothetical protein
587	 36.12	0	772818..773606	+	262	58584848	-	Wbm0591	-	Type IV secretory pathway, VirB9 component
588	 34.46	0	773630..775135	-	501	58584849	-	Wbm0592	-	putative monovalent cation/H+ antiporter subunit D
589	 36.61	0	775225..776415	-	396	58584850	-	Wbm0593	-	queuine/archaeosine tRNA-ribosyltransferase
590	 34.73	0	776416..776916	-	166	58584851	-	Wbm0594	-	NADH dehydrogenase subunit E
591	 33.63	0	779421..779753	+	110	58584852	-	Wbm0595	-	hypothetical protein
592	 35.67	0	781215..781985	-	256	58584853	-	Wbm0596	-	response regulator
593	 35.26	0	782308..783291	+	327	58584854	-	Wbm0597	-	glycerol-3-phosphate dehydrogenase
594	 33.77	0	783873..784562	+	229	58584855	-	Wbm0598	-	acetyltransferase domain-containing protein
595	 29.38	-1	784618..785754	+	378	58584856	-	Wbm0599	-	PAS/PAC domain-containing protein
596	 34.35	0	785758..786546	-	262	58584857	sdhB	Wbm0600	-	succinate dehydrogenase iron-sulfur subunit
597	 34.11	0	786640..787155	-	171	58584858	-	Wbm0601	-	metal-dependent hydrolase
598	 41.23	+2	787556..788746	-	396	58584859	-	Wbm0602	-	cell division protein FtsZ
599	 39.72	+1	789436..789936	-	166	58584860	-	Wbm0603	-	hypothetical protein
600	 36.30	0	792082..792351	-	89	58584861	-	Wbm0604	-	hypothetical protein
601	 37.64	+1	792705..795302	-	865	58584862	leuS	Wbm0605	-	leucyl-tRNA synthetase
602	 38.35	+1	795315..795932	-	205	58584863	-	Wbm0606	-	membrane protein related to metalloendopeptidase
603	 29.07	-1	796794..797051	+	85	58584864	-	Wbm0607	-	hypothetical protein
604	 35.49	0	798226..798549	-	107	58584865	-	Wbm0608	-	thioredoxin, trx
605	 33.17	0	798673..799293	-	206	58584866	-	Wbm0609	-	ribonuclease D
606	 34.68	0	799640..800083	+	147	58584867	-	Wbm0610	-	hypothetical protein
607	 37.56	+1	800227..802260	+	677	58584868	-	Wbm0611	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
608	 33.99	0	802269..803936	+	555	58584869	-	Wbm0612	-	Xaa-Pro aminopeptidase
609	 32.52	0	804060..804428	+	122	58584870	-	Wbm0613	-	hypothetical protein
610	 35.98	0	804446..805426	-	326	58584871	-	Wbm0614	-	3-oxoacyl-[acyl-carrier-protein] synthase III
611	 35.45	0	805419..806456	-	345	58584872	-	Wbm0615	-	putative glycerol-3-phosphate acyltransferase PlsX
612	 38.80	+1	806467..806649	-	60	161899041	rpmF	Wbm0616	-	50S ribosomal protein L32
613	 35.38	0	806891..807673	+	260	58584874	-	Wbm0617	-	ABC-type transport system involved in resistance to organic solvents, permease component
614	 32.91	0	807666..808376	+	236	58584875	-	Wbm0618	-	ABC-type transport system involved in resistance to organic solvents, ATPase component
615	 33.85	0	808398..808784	-	128	58584876	-	Wbm0619	-	cytochrome c-type biogenesis protein CcmE
616	 33.22	0	808902..809813	-	303	58584877	-	Wbm0620	-	biotin-(acetyl-CoA carboxylase) ligase
617	 32.90	0	809815..811212	-	465	58584878	-	Wbm0621	-	NADH:ubiquinone oxidoreductase chain N
618	 34.44	0	811209..812651	-	480	58584879	-	Wbm0622	-	NADH:ubiquinone oxidoreductase chain M
619	 34.14	0	812655..814511	-	618	58584880	-	Wbm0623	-	NADH:ubiquinone oxidoreductase chain L
620	 35.60	0	814516..814824	-	102	58584881	-	Wbm0624	-	NADH:ubiquinone oxidoreductase chain K
621	 35.77	0	814815..815348	-	177	58584882	-	Wbm0625	-	NADH:ubiquinone oxidoreductase chain J
622	 31.45	-1	816014..816331	+	105	58584883	-	Wbm0626	-	hypothetical protein
623	 31.79	0	816754..816948	+	64	58584884	-	Wbm0627	-	hypothetical protein
624	 34.64	0	817133..819049	+	638	58584885	-	Wbm0628	-	superfamily I DNA/RNA helicase
625	 35.58	0	819501..820478	-	325	58584886	-	Wbm0629	-	NADPH:quinone reductase
626	 38.51	+1	822762..824228	-	488	58584887	-	Wbm0630	-	leucyl aminopeptidase
627	 36.41	0	824287..824937	-	216	58584888	-	Wbm0631	-	protocatechuate 3,4-dioxygenase beta subunit
628	 36.43	0	825475..825603	-	42	58584889	rpmJ	Wbm0632	-	50S ribosomal protein L36
629	 30.65	-1	825671..826489	-	272	58584890	-	Wbm0633	-	hypothetical protein
630	 37.55	+1	827123..827833	+	236	58584891	-	Wbm0634	-	ABC-type transport system involved in cytochrome c biogenesis, permease component
631	 35.09	0	828913..830961	-	682	58584892	-	Wbm0635	-	RecG-like helicase
632	 35.35	0	832084..832977	-	297	58584893	-	Wbm0636	-	tRNA delta(2)-isopentenylpyrophosphate transferase
633	 36.73	0	833053..833523	+	156	58584894	-	Wbm0637	-	hypothetical protein
634	 31.58	-1	833639..834265	+	208	58584895	-	Wbm0638	-	putative translation factor, SUA5
635	 32.50	0	834243..835079	+	278	58584896	-	Wbm0639	-	ATPase involved in DNA replication, HolB
636	 27.06	-2	835680..835934	+	84	58584897	-	Wbm0640	-	hypothetical protein
637	 31.39	-1	835982..836650	+	222	58584898	-	Wbm0641	-	Type IV secretory pathway, component VirB8
638	 35.62	0	836656..837267	-	203	58584899	-	Wbm0642	-	ribonuclease HII
639	 33.54	0	837274..838254	-	326	58584900	-	Wbm0643	-	UDP-N-acetylmuramyl pentapeptide phosphotransferase
640	 36.06	0	838330..840453	-	707	58584901	-	Wbm0644	-	DNA segregation ATPase FtsK
641	 33.33	0	840454..840732	-	92	58584902	-	Wbm0645	-	YggT family membrane protein
642	 28.54	-2	840948..841385	-	145	58584903	-	Wbm0646	-	hypothetical protein
643	 36.23	0	842029..850548	-	2839	58584904	-	Wbm0647	-	DNA-directed RNA polymerase, fusion of beta and beta' subunits. RpoB/RpoC
644	 36.57	0	850616..851017	-	133	58584905	rplL	Wbm0648	-	50S ribosomal protein L7/L12
645	 33.14	0	851043..851561	-	172	58584906	rplJ	Wbm0649	-	50S ribosomal protein L10
646	 33.03	0	851573..852226	-	217	58584907	rplA	Wbm0650	-	50S ribosomal protein L1
647	 41.04	+2	852231..852671	-	146	58584908	rplK	Wbm0651	-	50S ribosomal protein L11
648	 30.94	-1	852674..853510	-	278	58584909	-	Wbm0652	-	transcription antiterminator
649	 41.43	+2	853808..854980	-	390	58584910	-	Wbm0653	-	elongation factor Tu
650	 36.28	0	855331..856482	-	383	58584911	-	Wbm0654	-	carbamoyl phosphate synthase small subunit
651	 33.53	0	856685..857191	+	168	58584912	-	Wbm0655	-	hypothetical protein
652	 35.79	0	857276..858169	-	297	58584913	-	Wbm0656	-	methionyl-tRNA formyltransferase
653	 38.80	+1	858212..858577	-	121	58584914	rplT	Wbm0657	-	50S ribosomal protein L20
654	 34.34	0	858598..858795	-	65	58584915	-	Wbm0658	-	ribosomal protein L35
655	 32.46	0	858918..859373	-	151	58584916	-	Wbm0659	-	hypothetical protein
656	 29.17	-1	859569..859904	-	111	58584917	-	Wbm0660	-	transcriptional regulator
657	 31.39	-1	859901..860209	-	102	58584918	-	Wbm0661	-	nucleoid DNA-binding protein
658	 34.87	0	863466..863660	-	64	58584919	-	Wbm0662	-	hypothetical protein
659	 35.28	0	863784..864398	-	204	58584920	rpsD	Wbm0663	-	30S ribosomal protein S4
660	 39.24	+1	864536..866500	+	654	58584921	-	Wbm0664	-	transketolase
661	 32.43	0	867240..867572	+	110	58584922	-	Wbm0665	-	hypothetical protein
662	 40.04	+1	868527..869525	+	332	58584923	-	Wbm0666	-	pyruvate dehydrogenase subunit beta
663	 37.95	+1	870048..871844	-	598	58584924	-	Wbm0667	-	GTP-binding protein LepA
664	 34.06	0	871925..873295	-	456	58584925	-	Wbm0668	-	malonyl-CoA decarboxylase
665	 34.28	0	876928..877245	-	105	58584926	-	Wbm0669	-	hypothetical protein
666	 37.20	0	877313..878062	-	249	58584927	-	Wbm0670	-	hypothetical protein
667	 34.59	0	878128..878841	-	237	58584928	-	Wbm0671	-	DNA uptake lipoprotein
668	 34.15	0	879419..880402	-	327	58584929	-	Wbm0672	-	hypothetical protein
669	 34.25	0	880511..881053	-	180	58584930	-	Wbm0673	-	phosphatidylglycerophosphate synthase
34.55	MEAN

2.88	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.