IslandPathversion 1.0

IslandPath Analysis: Wolbachia endosymbiont strain TRS of Brugia malayi



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.55 STD DEV: 2.88
Wolbachia endosymbiont strain TRS of Brugia malayi, complete genome - 1..1080084
805 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
493	 32.34	0	647842..648042	+	66	58584754	rpmG	Wbm0497	-	50S ribosomal protein L33
494	 27.30	-2	648067..648348	+	93	58584755	-	Wbm0498	-	XRE family transcriptional regulator
495	 36.15	0	649784..653122	+	1112	58584756	-	Wbm0499	-	DNA polymerase III alpha subunit
496	 33.33	0	653171..653953	+	260	58584757	-	Wbm0500	-	ribosomal protein S6
497	 32.25	0	653953..654228	+	91	58584758	rpsR	Wbm0501	-	30S ribosomal protein S18
498	 37.08	0	654236..654796	+	186	58584759	rplI	Wbm0502	-	50S ribosomal protein L9
499	 34.96	0	654903..656195	+	430	58584760	-	Wbm0503	-	adenylosuccinate lyase
500	 36.64	0	658457..659848	+	463	58584761	fumC	Wbm0504	-	fumarate hydratase
501	 30.69	-1	660161..660538	-	125	58584762	-	Wbm0505	-	hypothetical protein
502	 31.24	-1	660522..661571	-	349	58584763	-	Wbm0506	-	outer membrane protein
503	 36.67	0	661575..661934	-	119	58584764	-	Wbm0507	-	ferredoxin
504	 35.40	0	662055..663551	+	498	58584765	-	Wbm0508	-	UDP-N-acetylmuramoylalanine-D-glutamate ligase
505	 31.67	-1	663564..664163	+	199	58584766	-	Wbm0509	-	TetR family transcriptional regulator
506	 27.98	-2	664252..664494	+	80	58584767	-	Wbm0510	-	hypothetical protein
507	 31.90	0	664926..665135	+	69	58584768	-	Wbm0511	-	hypothetical protein
508	 37.73	+1	667148..670402	-	1084	161899042	carB	Wbm0512	-	carbamoyl phosphate synthase large subunit
509	 36.07	0	672461..672643	-	60	58584770	-	Wbm0513	-	hypothetical protein
510	 35.71	0	672846..673055	+	69	58584771	-	Wbm0514	-	hypothetical protein
511	 30.11	-1	673098..673283	+	61	58584772	-	Wbm0515	-	hypothetical protein
512	 38.73	+1	674181..674717	-	178	58584773	-	Wbm0516	-	hypothetical protein
513	 33.78	0	674882..675331	+	149	58584774	-	Wbm0517	-	nitroreductase
514	 39.62	+1	675417..676196	+	259	58584775	-	Wbm0518	-	diaminopimelate epimerase
515	 41.89	+2	676204..677091	-	295	58584776	-	Wbm0519	-	succinyl-CoA synthetase, alpha subunit
516	 36.95	0	677095..678255	-	386	58584777	-	Wbm0520	-	succinyl-CoA synthetase, beta subunit
517	 34.83	0	678284..678484	-	66	58584778	rpsU	Wbm0521	-	30S ribosomal protein S21
518	 26.94	-2	680323..680541	-	72	58584779	-	Wbm0522	-	hypothetical protein
519	 36.00	0	681027..681251	-	74	58584780	-	Wbm0523	-	hypothetical protein
520	 33.85	0	681437..681628	-	63	58584781	-	Wbm0524	-	hypothetical protein
521	 28.89	-1	681709..682023	-	104	58584782	-	Wbm0525	-	hypothetical protein
522	 35.71	0	682180..682389	-	69	58584783	-	Wbm0526	-	hypothetical protein
523	 37.81	+1	683292..684788	-	498	58584784	-	Wbm0527	-	IMP dehydrogenase, GuaB
524	 35.10	0	685594..687009	-	471	58584785	rho	Wbm0528	-	transcription termination factor Rho
525	 32.49	0	687216..687806	-	196	58584786	-	Wbm0529	-	hypothetical protein
526	 33.00	0	688142..689950	+	602	58584787	-	Wbm0530	-	parvulin-like peptidyl-prolyl isomerase, PPID
527	 34.89	0	690087..690407	+	106	58584788	rpsP	Wbm0531	-	30S ribosomal protein S16
528	 35.26	0	690417..691403	+	328	58584789	-	Wbm0532	-	geranylgeranyl pyrophosphate synthase
529	 34.43	0	691465..692013	+	182	58584790	-	Wbm0533	-	molecular chaperone GrpE (heat shock protein)
530	 34.83	0	692059..693057	+	332	58584791	-	Wbm0534	-	tryptophanyl-tRNA synthetase
531	 34.95	0	694736..695602	-	288	58584792	ubiA	Wbm0535	-	prenyltransferase
532	 28.12	-2	695606..695950	-	114	58584793	-	Wbm0536	-	ribosome-binding factor A
533	 34.62	0	695960..698293	-	777	58584794	infB	Wbm0537	-	translation initiation factor IF-2
534	 36.02	0	698295..699857	-	520	58584795	nusA	Wbm0538	-	transcription elongation factor NusA
535	 37.92	+1	703747..706887	-	1046	58584796	-	Wbm0539	-	bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
536	 37.90	+1	707027..709630	-	867	58584797	-	Wbm0540	-	aconitate hydratase
537	 35.91	0	709789..710292	-	167	58584798	-	Wbm0541	-	preprotein translocase subunit SecB
538	 30.44	-1	710451..711107	+	218	58584799	-	Wbm0542	-	hypothetical protein
539	 34.34	0	711120..711815	+	231	58584800	-	Wbm0543	-	DNA polymerase III epsilon subunit
540	 32.03	0	711860..712474	+	204	58584801	-	Wbm0544	-	hypothetical protein
541	 34.67	0	713917..714216	-	99	58584802	-	Wbm0545	-	NADH:ubiquinone oxidoreductase 18 kDa subunit
542	 36.12	0	714334..715014	+	226	58584803	-	Wbm0546	-	esterase
543	 36.50	0	715020..715841	+	273	58584804	-	Wbm0547	-	nucleoside-diphosphate-sugar epimerase
544	 36.31	0	720893..722944	-	683	58584805	-	Wbm0548	-	NAD-dependent DNA ligase, Lig
545	 35.86	0	723146..723898	+	250	58584806	-	Wbm0549	-	acid phosphatase
546	 28.57	-2	724141..724350	-	69	58584807	-	Wbm0550	-	hypothetical protein
547	 35.16	0	724848..727259	-	803	58584808	-	Wbm0551	-	ATP-dependent Lon protease
548	 36.69	0	727275..728555	-	426	58584809	clpX	Wbm0552	-	ATP-dependent protease ATP-binding subunit
549	 35.89	0	728555..729181	-	208	58584810	-	Wbm0553	-	protease subunit of ATP-dependent Clp protease
550	 32.37	0	729193..730536	-	447	58584811	-	Wbm0554	-	FKBP-type peptidyl-prolyl cis-trans isomerase, TIG
551	 35.19	0	730917..731507	+	196	58584812	-	Wbm0555	-	lipoprotein, OsmY ortholog
552	 32.57	0	731584..732501	+	305	58584813	-	Wbm0556	-	glutathione synthetase
553	 34.01	0	732486..733517	-	343	58584814	-	Wbm0557	-	UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase
554	 34.74	0	733769..733981	+	70	58584815	-	Wbm0558	-	hypothetical protein
555	 36.25	0	733983..735422	-	479	58584816	-	Wbm0559	-	dihydrolipoamide dehydrogenase E3 component
556	 33.48	0	736435..737106	+	223	58584817	-	Wbm0560	-	PQQ-like beta-propeller repeat-containing protein
557	 37.80	+1	737099..738487	+	462	58584818	-	Wbm0561	-	dihydrolipoamide dehydrogenase E3 component
558	 34.27	0	738490..739668	+	392	58584819	-	Wbm0562	-	integrase
559	 31.67	-1	740335..740574	-	79	58584820	-	Wbm0563	-	hypothetical protein
560	 35.93	0	740740..740970	-	76	58584821	-	Wbm0564	-	hypothetical protein
561	 36.26	0	740994..741335	-	113	58584822	-	Wbm0565	-	hypothetical protein
562	 38.56	+1	741449..742405	-	318	58584823	-	Wbm0566	-	thioredoxin reductase
563	 35.77	0	742392..743006	-	204	58584824	-	Wbm0567	-	peroxiredoxin
564	 35.49	0	743117..744322	-	401	58584825	-	Wbm0568	-	succinyl-diaminopimelate desuccinylase
565	 34.13	0	746774..747148	+	124	58584826	-	Wbm0569	-	ferredoxin
566	 33.33	0	748388..749407	+	339	58584827	-	Wbm0570	-	D-alanine-D-alanine ligase
567	 30.57	-1	749408..750166	+	252	58584828	-	Wbm0571	-	cell division septal protein
568	 33.01	0	751170..751481	-	103	58584829	-	Wbm0572	-	nucleoid DNA-binding protein
569	 35.79	0	751629..752075	-	148	58584830	rpsI	Wbm0573	-	30S ribosomal protein S9
570	 34.86	0	752085..752543	-	152	58584831	rplM	Wbm0574	-	50S ribosomal protein L13
571	 33.50	0	752673..753908	+	411	58584832	-	Wbm0575	-	Outer membrane protein
572	 32.25	0	753928..754296	+	122	58584833	-	Wbm0576	-	hypothetical protein
573	 32.26	0	754520..755170	+	216	58584834	-	Wbm0577	-	23S rRNA methylase
574	 31.17	-1	755188..755835	-	215	58584835	-	Wbm0578	-	ABC-type transport system involved in cytochrome c biogenesis, permease component
575	 33.07	0	755942..756325	+	127	58584836	-	Wbm0579	-	DnaK suppressor protein
576	 35.54	0	756340..756927	-	195	58584837	-	Wbm0580	-	guanylate kinase
577	 31.41	-1	756979..758799	-	606	58584838	-	Wbm0581	-	pentapeptide repeat-containing protein
578	 32.89	0	758774..760114	-	446	58584839	-	Wbm0582	-	ankyrin repeat-containing protein
579	 37.40	0	760611..761126	-	171	58584840	-	Wbm0583	-	inorganic pyrophosphatase
580	 34.76	0	761701..762192	-	163	58584841	-	Wbm0584	-	ubiquinone biosynthesis protein COQ7
581	 33.72	0	762206..762718	-	170	58584842	-	Wbm0585	-	disulfide bond formation protein DsbB
582	 35.31	0	762744..764156	-	470	58584843	engA	Wbm0586	-	GTP-binding protein EngA
583	 33.81	0	764294..765346	+	350	58584844	-	Wbm0587	-	hypothetical protein
584	 35.17	0	765454..766980	+	508	58584845	-	Wbm0588	-	Acetyl-CoA carboxylase, carboxyltransferase component
585	 32.35	0	767236..768051	+	271	58584846	-	Wbm0589	-	formamidopyrimidine-DNA glycosylase
586	 33.12	0	768732..769190	-	152	58584847	-	Wbm0590	-	hypothetical protein
587	 36.12	0	772818..773606	+	262	58584848	-	Wbm0591	-	Type IV secretory pathway, VirB9 component
588	 34.46	0	773630..775135	-	501	58584849	-	Wbm0592	-	putative monovalent cation/H+ antiporter subunit D
589	 36.61	0	775225..776415	-	396	58584850	-	Wbm0593	-	queuine/archaeosine tRNA-ribosyltransferase
590	 34.73	0	776416..776916	-	166	58584851	-	Wbm0594	-	NADH dehydrogenase subunit E
591	 33.63	0	779421..779753	+	110	58584852	-	Wbm0595	-	hypothetical protein
592	 35.67	0	781215..781985	-	256	58584853	-	Wbm0596	-	response regulator
34.55	MEAN

2.88	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.