IslandPathversion 1.0

IslandPath Analysis: Wolbachia endosymbiont strain TRS of Brugia malayi



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.55 STD DEV: 2.88
Wolbachia endosymbiont strain TRS of Brugia malayi, complete genome - 1..1080084
805 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
448	 36.85	0	588943..590109	+	388	58584709	-	Wbm0452	-	SAM-dependent methyltransferase
449	 39.43	+1	590443..591804	-	453	58584710	-	Wbm0453	-	glutamyl- and glutaminyl-tRNA synthetase
450	 35.91	0	591965..592702	+	245	58584711	-	Wbm0454	-	hypothetical protein
451	 35.91	0	592751..594730	+	659	58584712	-	Wbm0455	-	Acetyl/propionyl-CoA carboxylase, alpha subunit
452	 34.82	0	594713..595720	-	335	58584713	-	Wbm0456	-	hypothetical protein
453	 33.75	0	597316..597792	-	158	58584714	-	Wbm0457	-	F0F1-type ATP synthase, subunit b
454	 28.96	-1	597801..598280	-	159	58584715	-	Wbm0458	-	F0F1-type ATP synthase, subunit b
455	 38.60	+1	598284..598511	-	75	58584716	-	Wbm0459	-	F0F1 ATP synthase subunit C
456	 33.88	0	598572..599297	-	241	58584717	-	Wbm0460	-	F0F1 ATP synthase subunit A
457	 35.60	0	600381..602759	+	792	58584718	-	Wbm0461	-	phenylalanyl-tRNA synthetase beta subunit
458	 38.59	+1	602761..603693	-	310	58584719	-	Wbm0462	-	tRNA-dihydrouridine synthase
459	 36.19	0	603702..605033	-	443	58584720	-	Wbm0463	-	membrane-associated or secreted protein
460	 35.76	0	605187..606464	+	425	58584721	-	Wbm0464	-	seryl-tRNA synthetase
461	 37.19	0	606499..607770	+	423	58584722	-	Wbm0465	-	phosphoribosylamine--glycine ligase
462	 33.33	0	609123..609308	+	61	58584723	-	Wbm0466	-	hypothetical protein
463	 37.10	0	609641..609826	+	61	58584724	-	Wbm0467	-	hypothetical protein
464	 35.27	0	609828..610034	-	68	58584725	-	Wbm0468	-	hypothetical protein
465	 36.27	0	611489..613123	-	544	58584726	-	Wbm0469	-	metallo-beta-lactamase superfamily hydrolase
466	 35.67	0	613360..614172	+	270	58584727	-	Wbm0470	-	enoyl-[acyl-carrier-protein] reductase (NADH)
467	 41.61	+2	614250..614732	+	160	58584728	-	Wbm0471	-	NADH dehydrogenase subunit I
468	 37.65	+1	614874..616772	+	632	58584729	-	Wbm0472	-	threonyl-tRNA synthetase
469	 35.10	0	616790..617299	+	169	58584730	-	Wbm0473	-	translation initiation factor 3, IF-3
470	 39.22	+1	618412..619686	-	424	58584731	-	Wbm0474	-	NADH dehydrogenase I subunit F
471	 36.56	0	622220..622993	-	257	58584732	-	Wbm0475	-	Short-chain alcohol dehydrogenase family enzyme
472	 33.82	0	622980..623804	-	274	58584733	-	Wbm0476	-	tRNA processing exoribonuclease BN
473	 38.62	+1	625051..625239	-	62	58584734	-	Wbm0477	-	hypothetical protein
474	 38.96	+1	625266..625514	-	82	58584735	-	Wbm0478	-	hypothetical protein
475	 24.89	-2	625612..625836	-	74	58584736	-	Wbm0479	-	hypothetical protein
476	 35.10	0	626162..627517	+	451	58584737	-	Wbm0480	-	phosphomannomutase
477	 33.59	0	627663..628826	-	387	58584738	-	Wbm0481	-	membrane-bound protoheme IX biogenesis protein, HemY
478	 29.80	-1	628877..629611	-	244	58584739	-	Wbm0482	-	hypothetical protein
479	 34.97	0	629604..630761	-	385	58584740	-	Wbm0483	-	ABC-type transport system, involved in lipoprotein release, permease component
480	 32.78	0	632376..633641	-	421	58584741	-	Wbm0484	-	hypothetical protein
481	 28.96	-1	633727..634092	-	121	58584742	-	Wbm0485	-	succinate dehydrogenase subunit D sdhD, hydrophobic membrane anchor protein
482	 28.57	-2	634089..634466	-	125	58584743	-	Wbm0486	-	succinate dehydrogenase subunit C sdhC
483	 28.02	-2	636292..636837	+	181	58584744	-	Wbm0487	-	hypothetical protein
484	 29.34	-1	637371..637871	-	166	58584745	-	Wbm0488	-	Smr/mutS family protein
485	 32.30	0	637964..638740	+	258	58584746	-	Wbm0489	-	rRNA methylase
486	 33.33	0	638808..639530	+	240	58584747	-	Wbm0490	-	integral membrane protein, interacts with FtsH
487	 34.26	0	639531..640070	+	179	58584748	-	Wbm0491	-	cytochrome C oxidase assembly protein
488	 36.89	0	640843..642333	-	496	58584749	-	Wbm0492	-	UDP-N-acetylmuramyl tripeptide synthase
489	 38.00	+1	642308..643549	-	413	58584750	-	Wbm0493	-	cystathionine beta-lyase
490	 30.53	-1	643556..643840	-	94	58584751	-	Wbm0494	-	stress-induced morphogen, BolA
491	 37.16	0	643913..645820	-	635	58584752	-	Wbm0495	-	molecular chaperone, DnaK
492	 34.18	0	645908..647680	-	590	58584753	-	Wbm0496	-	ribonuclease G and E
493	 32.34	0	647842..648042	+	66	58584754	rpmG	Wbm0497	-	50S ribosomal protein L33
494	 27.30	-2	648067..648348	+	93	58584755	-	Wbm0498	-	XRE family transcriptional regulator
495	 36.15	0	649784..653122	+	1112	58584756	-	Wbm0499	-	DNA polymerase III alpha subunit
496	 33.33	0	653171..653953	+	260	58584757	-	Wbm0500	-	ribosomal protein S6
497	 32.25	0	653953..654228	+	91	58584758	rpsR	Wbm0501	-	30S ribosomal protein S18
498	 37.08	0	654236..654796	+	186	58584759	rplI	Wbm0502	-	50S ribosomal protein L9
499	 34.96	0	654903..656195	+	430	58584760	-	Wbm0503	-	adenylosuccinate lyase
500	 36.64	0	658457..659848	+	463	58584761	fumC	Wbm0504	-	fumarate hydratase
501	 30.69	-1	660161..660538	-	125	58584762	-	Wbm0505	-	hypothetical protein
502	 31.24	-1	660522..661571	-	349	58584763	-	Wbm0506	-	outer membrane protein
503	 36.67	0	661575..661934	-	119	58584764	-	Wbm0507	-	ferredoxin
504	 35.40	0	662055..663551	+	498	58584765	-	Wbm0508	-	UDP-N-acetylmuramoylalanine-D-glutamate ligase
505	 31.67	-1	663564..664163	+	199	58584766	-	Wbm0509	-	TetR family transcriptional regulator
506	 27.98	-2	664252..664494	+	80	58584767	-	Wbm0510	-	hypothetical protein
507	 31.90	0	664926..665135	+	69	58584768	-	Wbm0511	-	hypothetical protein
508	 37.73	+1	667148..670402	-	1084	161899042	carB	Wbm0512	-	carbamoyl phosphate synthase large subunit
509	 36.07	0	672461..672643	-	60	58584770	-	Wbm0513	-	hypothetical protein
510	 35.71	0	672846..673055	+	69	58584771	-	Wbm0514	-	hypothetical protein
511	 30.11	-1	673098..673283	+	61	58584772	-	Wbm0515	-	hypothetical protein
512	 38.73	+1	674181..674717	-	178	58584773	-	Wbm0516	-	hypothetical protein
513	 33.78	0	674882..675331	+	149	58584774	-	Wbm0517	-	nitroreductase
514	 39.62	+1	675417..676196	+	259	58584775	-	Wbm0518	-	diaminopimelate epimerase
515	 41.89	+2	676204..677091	-	295	58584776	-	Wbm0519	-	succinyl-CoA synthetase, alpha subunit
516	 36.95	0	677095..678255	-	386	58584777	-	Wbm0520	-	succinyl-CoA synthetase, beta subunit
517	 34.83	0	678284..678484	-	66	58584778	rpsU	Wbm0521	-	30S ribosomal protein S21
518	 26.94	-2	680323..680541	-	72	58584779	-	Wbm0522	-	hypothetical protein
519	 36.00	0	681027..681251	-	74	58584780	-	Wbm0523	-	hypothetical protein
520	 33.85	0	681437..681628	-	63	58584781	-	Wbm0524	-	hypothetical protein
521	 28.89	-1	681709..682023	-	104	58584782	-	Wbm0525	-	hypothetical protein
522	 35.71	0	682180..682389	-	69	58584783	-	Wbm0526	-	hypothetical protein
523	 37.81	+1	683292..684788	-	498	58584784	-	Wbm0527	-	IMP dehydrogenase, GuaB
524	 35.10	0	685594..687009	-	471	58584785	rho	Wbm0528	-	transcription termination factor Rho
525	 32.49	0	687216..687806	-	196	58584786	-	Wbm0529	-	hypothetical protein
526	 33.00	0	688142..689950	+	602	58584787	-	Wbm0530	-	parvulin-like peptidyl-prolyl isomerase, PPID
527	 34.89	0	690087..690407	+	106	58584788	rpsP	Wbm0531	-	30S ribosomal protein S16
528	 35.26	0	690417..691403	+	328	58584789	-	Wbm0532	-	geranylgeranyl pyrophosphate synthase
529	 34.43	0	691465..692013	+	182	58584790	-	Wbm0533	-	molecular chaperone GrpE (heat shock protein)
530	 34.83	0	692059..693057	+	332	58584791	-	Wbm0534	-	tryptophanyl-tRNA synthetase
531	 34.95	0	694736..695602	-	288	58584792	ubiA	Wbm0535	-	prenyltransferase
532	 28.12	-2	695606..695950	-	114	58584793	-	Wbm0536	-	ribosome-binding factor A
533	 34.62	0	695960..698293	-	777	58584794	infB	Wbm0537	-	translation initiation factor IF-2
534	 36.02	0	698295..699857	-	520	58584795	nusA	Wbm0538	-	transcription elongation factor NusA
535	 37.92	+1	703747..706887	-	1046	58584796	-	Wbm0539	-	bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
536	 37.90	+1	707027..709630	-	867	58584797	-	Wbm0540	-	aconitate hydratase
537	 35.91	0	709789..710292	-	167	58584798	-	Wbm0541	-	preprotein translocase subunit SecB
538	 30.44	-1	710451..711107	+	218	58584799	-	Wbm0542	-	hypothetical protein
539	 34.34	0	711120..711815	+	231	58584800	-	Wbm0543	-	DNA polymerase III epsilon subunit
540	 32.03	0	711860..712474	+	204	58584801	-	Wbm0544	-	hypothetical protein
541	 34.67	0	713917..714216	-	99	58584802	-	Wbm0545	-	NADH:ubiquinone oxidoreductase 18 kDa subunit
542	 36.12	0	714334..715014	+	226	58584803	-	Wbm0546	-	esterase
543	 36.50	0	715020..715841	+	273	58584804	-	Wbm0547	-	nucleoside-diphosphate-sugar epimerase
544	 36.31	0	720893..722944	-	683	58584805	-	Wbm0548	-	NAD-dependent DNA ligase, Lig
545	 35.86	0	723146..723898	+	250	58584806	-	Wbm0549	-	acid phosphatase
546	 28.57	-2	724141..724350	-	69	58584807	-	Wbm0550	-	hypothetical protein
547	 35.16	0	724848..727259	-	803	58584808	-	Wbm0551	-	ATP-dependent Lon protease
34.55	MEAN

2.88	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.