IslandPathversion 1.0

IslandPath Analysis: Wolbachia endosymbiont strain TRS of Brugia malayi



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.55 STD DEV: 2.88
Wolbachia endosymbiont strain TRS of Brugia malayi, complete genome - 1..1080084
805 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
398	 37.51	+1	514795..515775	+	326	58584659	-	Wbm0402	-	(acyl-carrier-protein) S-malonyltransferase, FabD
399	 37.25	0	515831..517336	-	501	58584660	-	Wbm0403	-	phosphoglyceromutase
400	 28.70	-2	520933..521256	+	107	58584661	-	Wbm0404	-	hypothetical protein
401	 37.37	0	523904..526606	+	900	58584662	-	Wbm0405	-	DNA gyrase subunit A
402	 37.81	+1	526711..527313	+	200	58584663	-	Wbm0406	-	Rieske Fe-S protein
403	 33.46	0	527841..528626	-	261	58584664	ksgA	Wbm0407	-	dimethyladenosine transferase
404	 34.62	0	529449..530150	+	233	58584665	-	Wbm0408	-	triosephosphate isomerase
405	 34.24	0	530282..531499	+	405	58584666	-	Wbm0409	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
406	 33.94	0	534696..535193	-	165	58584667	-	Wbm0410	-	hypothetical protein
407	 34.56	0	537214..538767	-	517	58584668	-	Wbm0411	-	AICAR transformylase/IMP cyclohydrolase PurH
408	 34.78	0	538874..540115	-	413	58584669	hisS	Wbm0412	-	histidyl-tRNA synthetase
409	 37.00	0	540112..540684	-	190	58584670	-	Wbm0413	-	NifU family protein
410	 31.63	-1	541171..542052	-	293	58584671	-	Wbm0414	-	hypothetical protein
411	 31.17	-1	542160..542528	-	122	58584672	-	Wbm0415	-	glutaredoxin
412	 33.14	0	542599..543627	+	342	58584673	-	Wbm0416	-	FAD synthase
413	 32.26	0	543624..544088	+	154	58584674	-	Wbm0417	-	lipoprotein signal peptidase
414	 34.45	0	544137..545477	+	446	58584675	-	Wbm0418	-	Zn-dependent peptidase
415	 32.72	0	545464..546774	+	436	58584676	-	Wbm0419	-	Zn-dependent peptidase
416	 38.66	+1	547672..548253	-	193	58584677	-	Wbm0420	-	folate-dependent phosphoribosylglycinamide formyltransferase PurN
417	 32.57	0	549239..549760	-	173	161899043	-	Wbm0421	-	putative monovalent cation/H+ antiporter subunit E
418	 33.33	0	551266..551535	+	89	58584679	-	Wbm0422	-	hypothetical protein
419	 30.56	-1	551761..552336	-	191	58584680	-	Wbm0423	-	hypothetical protein
420	 35.73	0	552576..553952	-	458	58584681	-	Wbm0424	-	Na+/alanine symporter
421	 33.33	0	555379..556149	-	256	58584682	-	Wbm0425	-	phosphatidylserine synthase
422	 34.71	0	556146..556799	-	217	58584683	-	Wbm0426	-	phosphatidylserine decarboxylase
423	 37.36	0	557080..558147	-	355	58584684	recA	Wbm0427	-	recombinase A
424	 35.73	0	558367..559116	+	249	58584685	truA	Wbm0428	-	tRNA pseudouridine synthase A
425	 32.83	0	559126..560307	-	393	58584686	-	Wbm0429	-	DNA polymerase III beta clamp subunit
426	 34.14	0	560403..560900	-	165	58584687	-	Wbm0430	-	hypothetical protein
427	 33.00	0	560893..561786	-	297	58584688	-	Wbm0431	-	DNA-directed RNA polymerase sigma 32 subunit
428	 36.38	0	562071..562793	-	240	58584689	-	Wbm0432	-	Outer surface protein Wsp
429	 35.74	0	563623..563955	-	110	58584690	-	Wbm0433	-	hypothetical protein
430	 35.49	0	563959..565443	-	494	58584691	-	Wbm0434	-	DNA polymerase III, gamma/tau subunit
431	 32.11	0	565886..566539	+	217	58584692	-	Wbm0435	-	glutathione S-transferase
432	 31.34	-1	566541..567191	-	216	58584693	-	Wbm0436	-	O-methyltransferase
433	 32.26	0	567441..567719	+	92	58584694	-	Wbm0437	-	hypothetical protein
434	 30.78	-1	567748..568452	-	234	58584695	-	Wbm0438	-	protein-disulfide isomerase
435	 33.68	0	568502..569077	-	191	58584696	-	Wbm0439	-	oligoketide cyclase/lipid transport protein
436	 28.43	-2	569265..569855	+	196	58584697	-	Wbm0440	-	ABC-type transport system involved in resistance to organic solvents, auxiliary component
437	 35.57	0	571117..572322	+	401	58584698	-	Wbm0441	-	aspartate kinase
438	 32.08	0	573673..574389	+	238	58584699	-	Wbm0442	-	tellurium resistance protein TerC
439	 37.11	0	574391..575953	-	520	58584700	guaA	Wbm0443	-	bifunctional GMP synthase/glutamine amidotransferase protein
440	 29.69	-1	576293..576484	-	63	58584701	-	Wbm0444	-	hypothetical protein
441	 36.58	0	577277..578599	+	440	58584702	gltX	Wbm0445	-	glutamyl-tRNA synthetase
442	 40.92	+2	579764..581095	-	443	58584703	-	Wbm0446	-	dihydroorotase, PyrC
443	 32.34	0	581536..584862	+	1108	58584704	-	Wbm0447	-	ankyrin repeat-containing protein
444	 42.03	+2	584834..586639	-	601	58584705	sdhA	Wbm0448	-	succinate dehydrogenase flavoprotein subunit
445	 37.55	+1	587290..588120	+	276	58584706	dapD	Wbm0449	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
446	 34.07	0	588141..588413	-	90	58584707	-	Wbm0450	-	hypothetical protein
447	 35.94	0	588414..588797	-	127	58584708	-	Wbm0451	-	hypothetical protein
448	 36.85	0	588943..590109	+	388	58584709	-	Wbm0452	-	SAM-dependent methyltransferase
449	 39.43	+1	590443..591804	-	453	58584710	-	Wbm0453	-	glutamyl- and glutaminyl-tRNA synthetase
450	 35.91	0	591965..592702	+	245	58584711	-	Wbm0454	-	hypothetical protein
451	 35.91	0	592751..594730	+	659	58584712	-	Wbm0455	-	Acetyl/propionyl-CoA carboxylase, alpha subunit
452	 34.82	0	594713..595720	-	335	58584713	-	Wbm0456	-	hypothetical protein
453	 33.75	0	597316..597792	-	158	58584714	-	Wbm0457	-	F0F1-type ATP synthase, subunit b
454	 28.96	-1	597801..598280	-	159	58584715	-	Wbm0458	-	F0F1-type ATP synthase, subunit b
455	 38.60	+1	598284..598511	-	75	58584716	-	Wbm0459	-	F0F1 ATP synthase subunit C
456	 33.88	0	598572..599297	-	241	58584717	-	Wbm0460	-	F0F1 ATP synthase subunit A
457	 35.60	0	600381..602759	+	792	58584718	-	Wbm0461	-	phenylalanyl-tRNA synthetase beta subunit
458	 38.59	+1	602761..603693	-	310	58584719	-	Wbm0462	-	tRNA-dihydrouridine synthase
459	 36.19	0	603702..605033	-	443	58584720	-	Wbm0463	-	membrane-associated or secreted protein
460	 35.76	0	605187..606464	+	425	58584721	-	Wbm0464	-	seryl-tRNA synthetase
461	 37.19	0	606499..607770	+	423	58584722	-	Wbm0465	-	phosphoribosylamine--glycine ligase
462	 33.33	0	609123..609308	+	61	58584723	-	Wbm0466	-	hypothetical protein
463	 37.10	0	609641..609826	+	61	58584724	-	Wbm0467	-	hypothetical protein
464	 35.27	0	609828..610034	-	68	58584725	-	Wbm0468	-	hypothetical protein
465	 36.27	0	611489..613123	-	544	58584726	-	Wbm0469	-	metallo-beta-lactamase superfamily hydrolase
466	 35.67	0	613360..614172	+	270	58584727	-	Wbm0470	-	enoyl-[acyl-carrier-protein] reductase (NADH)
467	 41.61	+2	614250..614732	+	160	58584728	-	Wbm0471	-	NADH dehydrogenase subunit I
468	 37.65	+1	614874..616772	+	632	58584729	-	Wbm0472	-	threonyl-tRNA synthetase
469	 35.10	0	616790..617299	+	169	58584730	-	Wbm0473	-	translation initiation factor 3, IF-3
470	 39.22	+1	618412..619686	-	424	58584731	-	Wbm0474	-	NADH dehydrogenase I subunit F
471	 36.56	0	622220..622993	-	257	58584732	-	Wbm0475	-	Short-chain alcohol dehydrogenase family enzyme
472	 33.82	0	622980..623804	-	274	58584733	-	Wbm0476	-	tRNA processing exoribonuclease BN
473	 38.62	+1	625051..625239	-	62	58584734	-	Wbm0477	-	hypothetical protein
474	 38.96	+1	625266..625514	-	82	58584735	-	Wbm0478	-	hypothetical protein
475	 24.89	-2	625612..625836	-	74	58584736	-	Wbm0479	-	hypothetical protein
476	 35.10	0	626162..627517	+	451	58584737	-	Wbm0480	-	phosphomannomutase
477	 33.59	0	627663..628826	-	387	58584738	-	Wbm0481	-	membrane-bound protoheme IX biogenesis protein, HemY
478	 29.80	-1	628877..629611	-	244	58584739	-	Wbm0482	-	hypothetical protein
479	 34.97	0	629604..630761	-	385	58584740	-	Wbm0483	-	ABC-type transport system, involved in lipoprotein release, permease component
480	 32.78	0	632376..633641	-	421	58584741	-	Wbm0484	-	hypothetical protein
481	 28.96	-1	633727..634092	-	121	58584742	-	Wbm0485	-	succinate dehydrogenase subunit D sdhD, hydrophobic membrane anchor protein
482	 28.57	-2	634089..634466	-	125	58584743	-	Wbm0486	-	succinate dehydrogenase subunit C sdhC
483	 28.02	-2	636292..636837	+	181	58584744	-	Wbm0487	-	hypothetical protein
484	 29.34	-1	637371..637871	-	166	58584745	-	Wbm0488	-	Smr/mutS family protein
485	 32.30	0	637964..638740	+	258	58584746	-	Wbm0489	-	rRNA methylase
486	 33.33	0	638808..639530	+	240	58584747	-	Wbm0490	-	integral membrane protein, interacts with FtsH
487	 34.26	0	639531..640070	+	179	58584748	-	Wbm0491	-	cytochrome C oxidase assembly protein
488	 36.89	0	640843..642333	-	496	58584749	-	Wbm0492	-	UDP-N-acetylmuramyl tripeptide synthase
489	 38.00	+1	642308..643549	-	413	58584750	-	Wbm0493	-	cystathionine beta-lyase
490	 30.53	-1	643556..643840	-	94	58584751	-	Wbm0494	-	stress-induced morphogen, BolA
491	 37.16	0	643913..645820	-	635	58584752	-	Wbm0495	-	molecular chaperone, DnaK
492	 34.18	0	645908..647680	-	590	58584753	-	Wbm0496	-	ribonuclease G and E
493	 32.34	0	647842..648042	+	66	58584754	rpmG	Wbm0497	-	50S ribosomal protein L33
494	 27.30	-2	648067..648348	+	93	58584755	-	Wbm0498	-	XRE family transcriptional regulator
495	 36.15	0	649784..653122	+	1112	58584756	-	Wbm0499	-	DNA polymerase III alpha subunit
496	 33.33	0	653171..653953	+	260	58584757	-	Wbm0500	-	ribosomal protein S6
497	 32.25	0	653953..654228	+	91	58584758	rpsR	Wbm0501	-	30S ribosomal protein S18
34.55	MEAN

2.88	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.