IslandPathversion 1.0

IslandPath Analysis: Wolbachia endosymbiont strain TRS of Brugia malayi



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.55 STD DEV: 2.88
Wolbachia endosymbiont strain TRS of Brugia malayi, complete genome - 1..1080084
805 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
363	 37.04	0	465918..467345	-	475	58584624	-	Wbm0367	-	isocitrate dehydrogenase
364	 29.00	-1	467626..467856	+	76	58584625	-	Wbm0368	-	hypothetical protein
365	 33.73	0	468086..468844	+	252	58584626	-	Wbm0369	-	phosphatidylglycerophosphatase A, PgpA
366	 36.90	0	468889..469728	+	279	58584627	glyQ	Wbm0370	-	glycyl-tRNA synthetase subunit alpha
367	 34.04	0	469732..471840	+	702	58584628	-	Wbm0371	-	glycyl-tRNA synthetase, beta subunit
368	 34.54	0	471825..473645	+	606	58584629	-	Wbm0372	-	nuclease subunit of the excinuclease complex, UvrC
369	 35.84	0	476052..477047	-	331	58584630	-	Wbm0373	-	delta-aminolevulinic acid dehydratase
370	 32.60	0	477156..478109	-	317	58584631	-	Wbm0374	-	hypothetical protein
371	 37.91	+1	478197..479222	-	341	161899044	-	Wbm0375	-	NADH dehydrogenase subunit H
372	 38.56	+1	479206..481254	-	682	58584633	-	Wbm0376	-	NADH dehydrogenase subunit G
373	 36.62	0	481268..481480	-	70	58584634	-	Wbm0377	-	hypothetical protein
374	 33.71	0	482448..482711	-	87	58584635	-	Wbm0378	-	hypothetical protein
375	 33.76	0	482819..483283	-	154	58584636	-	Wbm0379	-	cardiolipin synthase
376	 40.05	+1	483387..484874	-	495	58584637	-	Wbm0380	-	3-polyprenyl-4-hydroxybenzoate decarboxylase, UbiD
377	 31.29	-1	484901..485242	-	113	58584638	-	Wbm0381	-	hypothetical protein
378	 30.70	-1	486677..487435	+	252	58584639	-	Wbm0382	-	protein-disulfide isomerase
379	 35.01	0	490219..491115	-	298	58584640	-	Wbm0383	-	Co/Zn/Cd efflux system component
380	 34.40	0	491487..493928	+	813	58584641	-	Wbm0384	-	extracellular metallopeptidase
381	 35.01	0	494038..494934	-	298	58584642	pyrB	Wbm0385	-	aspartate carbamoyltransferase catalytic subunit
382	 35.00	0	496430..496729	+	99	58584643	-	Wbm0386	-	XRE family transcriptional regulator
383	 37.30	0	496792..497220	+	142	58584644	-	Wbm0387	-	DNA-directed RNA polymerase subunit omega, RpoZ
384	 31.69	0	497258..497500	+	80	58584645	-	Wbm0388	-	hypothetical protein
385	 29.51	-1	497507..497794	+	95	58584646	-	Wbm0389	-	putative monovalent cation/H+ antiporter subunit G
386	 33.52	0	497796..498323	+	175	58584647	-	Wbm0390	-	putative monovalent cation/H+ antiporter subunit B
387	 33.81	0	498316..498732	+	138	58584648	-	Wbm0391	-	putative monovalent cation/H+ antiporter subunit B
388	 31.50	-1	498732..499058	+	108	58584649	-	Wbm0392	-	putative monovalent cation/H+ antiporter subunit C
389	 35.23	0	499181..501130	+	649	58584650	-	Wbm0393	-	DNA-directed RNA polymerase sigma 70 subunit, RpoD
390	 32.03	0	501555..502013	-	152	58584651	-	Wbm0394	-	ankyrin repeat-containing protein
391	 38.21	+1	503366..506029	-	887	58584652	kgd	Wbm0395	-	alpha-ketoglutarate decarboxylase
392	 35.88	0	507716..509602	-	628	58584653	-	Wbm0396	-	DNA mismatch repair ATPase MutL
393	 39.09	+1	509607..510110	-	167	58584654	-	Wbm0397	-	phosphoribosylcarboxyaminoimidazole (NCAIR) mutase, PurE
394	 34.59	0	511094..512125	-	343	58584655	-	Wbm0398	-	ABC-type Fe3+ transport system, periplasmic component
395	 34.12	0	512255..513532	-	425	58584656	-	Wbm0399	-	hypothetical protein
396	 35.47	0	513628..514422	-	264	58584657	ppnK	Wbm0400	-	inorganic polyphosphate/ATP-NAD kinase
397	 35.21	0	514454..514666	-	70	58584658	-	Wbm0401	-	ribosomal protein L31
398	 37.51	+1	514795..515775	+	326	58584659	-	Wbm0402	-	(acyl-carrier-protein) S-malonyltransferase, FabD
399	 37.25	0	515831..517336	-	501	58584660	-	Wbm0403	-	phosphoglyceromutase
400	 28.70	-2	520933..521256	+	107	58584661	-	Wbm0404	-	hypothetical protein
401	 37.37	0	523904..526606	+	900	58584662	-	Wbm0405	-	DNA gyrase subunit A
402	 37.81	+1	526711..527313	+	200	58584663	-	Wbm0406	-	Rieske Fe-S protein
403	 33.46	0	527841..528626	-	261	58584664	ksgA	Wbm0407	-	dimethyladenosine transferase
404	 34.62	0	529449..530150	+	233	58584665	-	Wbm0408	-	triosephosphate isomerase
405	 34.24	0	530282..531499	+	405	58584666	-	Wbm0409	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
406	 33.94	0	534696..535193	-	165	58584667	-	Wbm0410	-	hypothetical protein
407	 34.56	0	537214..538767	-	517	58584668	-	Wbm0411	-	AICAR transformylase/IMP cyclohydrolase PurH
408	 34.78	0	538874..540115	-	413	58584669	hisS	Wbm0412	-	histidyl-tRNA synthetase
409	 37.00	0	540112..540684	-	190	58584670	-	Wbm0413	-	NifU family protein
410	 31.63	-1	541171..542052	-	293	58584671	-	Wbm0414	-	hypothetical protein
411	 31.17	-1	542160..542528	-	122	58584672	-	Wbm0415	-	glutaredoxin
412	 33.14	0	542599..543627	+	342	58584673	-	Wbm0416	-	FAD synthase
413	 32.26	0	543624..544088	+	154	58584674	-	Wbm0417	-	lipoprotein signal peptidase
414	 34.45	0	544137..545477	+	446	58584675	-	Wbm0418	-	Zn-dependent peptidase
415	 32.72	0	545464..546774	+	436	58584676	-	Wbm0419	-	Zn-dependent peptidase
416	 38.66	+1	547672..548253	-	193	58584677	-	Wbm0420	-	folate-dependent phosphoribosylglycinamide formyltransferase PurN
417	 32.57	0	549239..549760	-	173	161899043	-	Wbm0421	-	putative monovalent cation/H+ antiporter subunit E
418	 33.33	0	551266..551535	+	89	58584679	-	Wbm0422	-	hypothetical protein
419	 30.56	-1	551761..552336	-	191	58584680	-	Wbm0423	-	hypothetical protein
420	 35.73	0	552576..553952	-	458	58584681	-	Wbm0424	-	Na+/alanine symporter
421	 33.33	0	555379..556149	-	256	58584682	-	Wbm0425	-	phosphatidylserine synthase
422	 34.71	0	556146..556799	-	217	58584683	-	Wbm0426	-	phosphatidylserine decarboxylase
423	 37.36	0	557080..558147	-	355	58584684	recA	Wbm0427	-	recombinase A
424	 35.73	0	558367..559116	+	249	58584685	truA	Wbm0428	-	tRNA pseudouridine synthase A
425	 32.83	0	559126..560307	-	393	58584686	-	Wbm0429	-	DNA polymerase III beta clamp subunit
426	 34.14	0	560403..560900	-	165	58584687	-	Wbm0430	-	hypothetical protein
427	 33.00	0	560893..561786	-	297	58584688	-	Wbm0431	-	DNA-directed RNA polymerase sigma 32 subunit
428	 36.38	0	562071..562793	-	240	58584689	-	Wbm0432	-	Outer surface protein Wsp
429	 35.74	0	563623..563955	-	110	58584690	-	Wbm0433	-	hypothetical protein
430	 35.49	0	563959..565443	-	494	58584691	-	Wbm0434	-	DNA polymerase III, gamma/tau subunit
431	 32.11	0	565886..566539	+	217	58584692	-	Wbm0435	-	glutathione S-transferase
432	 31.34	-1	566541..567191	-	216	58584693	-	Wbm0436	-	O-methyltransferase
433	 32.26	0	567441..567719	+	92	58584694	-	Wbm0437	-	hypothetical protein
434	 30.78	-1	567748..568452	-	234	58584695	-	Wbm0438	-	protein-disulfide isomerase
435	 33.68	0	568502..569077	-	191	58584696	-	Wbm0439	-	oligoketide cyclase/lipid transport protein
436	 28.43	-2	569265..569855	+	196	58584697	-	Wbm0440	-	ABC-type transport system involved in resistance to organic solvents, auxiliary component
437	 35.57	0	571117..572322	+	401	58584698	-	Wbm0441	-	aspartate kinase
438	 32.08	0	573673..574389	+	238	58584699	-	Wbm0442	-	tellurium resistance protein TerC
439	 37.11	0	574391..575953	-	520	58584700	guaA	Wbm0443	-	bifunctional GMP synthase/glutamine amidotransferase protein
440	 29.69	-1	576293..576484	-	63	58584701	-	Wbm0444	-	hypothetical protein
441	 36.58	0	577277..578599	+	440	58584702	gltX	Wbm0445	-	glutamyl-tRNA synthetase
442	 40.92	+2	579764..581095	-	443	58584703	-	Wbm0446	-	dihydroorotase, PyrC
443	 32.34	0	581536..584862	+	1108	58584704	-	Wbm0447	-	ankyrin repeat-containing protein
444	 42.03	+2	584834..586639	-	601	58584705	sdhA	Wbm0448	-	succinate dehydrogenase flavoprotein subunit
445	 37.55	+1	587290..588120	+	276	58584706	dapD	Wbm0449	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
446	 34.07	0	588141..588413	-	90	58584707	-	Wbm0450	-	hypothetical protein
447	 35.94	0	588414..588797	-	127	58584708	-	Wbm0451	-	hypothetical protein
448	 36.85	0	588943..590109	+	388	58584709	-	Wbm0452	-	SAM-dependent methyltransferase
449	 39.43	+1	590443..591804	-	453	58584710	-	Wbm0453	-	glutamyl- and glutaminyl-tRNA synthetase
450	 35.91	0	591965..592702	+	245	58584711	-	Wbm0454	-	hypothetical protein
451	 35.91	0	592751..594730	+	659	58584712	-	Wbm0455	-	Acetyl/propionyl-CoA carboxylase, alpha subunit
452	 34.82	0	594713..595720	-	335	58584713	-	Wbm0456	-	hypothetical protein
453	 33.75	0	597316..597792	-	158	58584714	-	Wbm0457	-	F0F1-type ATP synthase, subunit b
454	 28.96	-1	597801..598280	-	159	58584715	-	Wbm0458	-	F0F1-type ATP synthase, subunit b
455	 38.60	+1	598284..598511	-	75	58584716	-	Wbm0459	-	F0F1 ATP synthase subunit C
456	 33.88	0	598572..599297	-	241	58584717	-	Wbm0460	-	F0F1 ATP synthase subunit A
457	 35.60	0	600381..602759	+	792	58584718	-	Wbm0461	-	phenylalanyl-tRNA synthetase beta subunit
458	 38.59	+1	602761..603693	-	310	58584719	-	Wbm0462	-	tRNA-dihydrouridine synthase
459	 36.19	0	603702..605033	-	443	58584720	-	Wbm0463	-	membrane-associated or secreted protein
460	 35.76	0	605187..606464	+	425	58584721	-	Wbm0464	-	seryl-tRNA synthetase
461	 37.19	0	606499..607770	+	423	58584722	-	Wbm0465	-	phosphoribosylamine--glycine ligase
462	 33.33	0	609123..609308	+	61	58584723	-	Wbm0466	-	hypothetical protein
34.55	MEAN

2.88	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.