IslandPathversion 1.0

IslandPath Analysis: Wolbachia endosymbiont strain TRS of Brugia malayi



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.55 STD DEV: 2.88
Wolbachia endosymbiont strain TRS of Brugia malayi, complete genome - 1..1080084
805 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
317	 36.86	0	419487..419855	-	122	58584578	rpsM	Wbm0320	-	30S ribosomal protein S13
318	 31.95	0	419914..420564	-	216	58584579	-	Wbm0321	-	adenylate kinase
319	 31.30	-1	420561..421889	-	442	58584580	secY	Wbm0322	-	preprotein translocase subunit SecY
320	 31.85	0	421893..422363	-	156	58584581	rplO	Wbm0323	-	50S ribosomal protein L15
321	 38.79	+1	422367..422879	-	170	58584582	rpsE	Wbm0324	-	30S ribosomal protein S5
322	 31.99	0	422892..423263	-	123	58584583	rplR	Wbm0325	-	50S ribosomal protein L18
323	 33.33	0	423269..423814	-	181	58584584	rplF	Wbm0326	-	50S ribosomal protein L6
324	 33.08	0	423831..424226	-	131	58584585	rpsH	Wbm0327	-	30S ribosomal protein S8
325	 30.74	-1	424248..424556	-	102	58584586	rpsN	Wbm0328	-	30S ribosomal protein S14
326	 31.27	-1	424573..425106	-	177	58584587	rplE	Wbm0329	-	50S ribosomal protein L5
327	 32.39	0	425113..425430	-	105	58584588	rplX	Wbm0330	-	50S ribosomal protein L24
328	 37.50	+1	425430..425789	-	119	58584589	rplN	Wbm0331	-	50S ribosomal protein L14
329	 32.91	0	425799..426032	-	77	58584590	rpsQ	Wbm0332	-	30S ribosomal protein S17
330	 30.92	-1	426025..426231	-	68	58584591	-	Wbm0333	-	50S ribosomal protein L29
331	 35.75	0	426240..426653	-	137	58584592	rplP	Wbm0334	-	50S ribosomal protein L16
332	 35.10	0	426665..427285	-	206	58584593	rpsC	Wbm0335	-	30S ribosomal protein S3
333	 31.62	-1	427324..427674	-	116	58584594	rplV	Wbm0336	-	50S ribosomal protein L22
334	 37.54	+1	427680..427964	-	94	58584595	rpsS	Wbm0337	-	30S ribosomal protein S19
335	 38.79	+1	427968..428792	-	274	58584596	rplB	Wbm0338	-	50S ribosomal protein L2
336	 26.04	-2	428794..429081	-	95	58584597	rplW	Wbm0339	-	50S ribosomal protein L23
337	 31.87	0	429078..429692	-	204	58584598	rplD	Wbm0340	-	50S ribosomal protein L4
338	 34.02	0	429695..430420	-	241	58584599	rplC	Wbm0341	-	50S ribosomal protein L3
339	 35.52	0	430417..430782	-	121	58584600	rpsJ	Wbm0342	-	30S ribosomal protein S10
340	 41.75	+2	430782..431981	-	399	58584601	-	Wbm0343	-	elongation factor Tu
341	 35.99	0	431993..434059	-	688	58584602	-	Wbm0344	-	elongation factor G
342	 36.88	0	434081..434560	-	159	58584603	-	Wbm0345	-	30S ribosomal protein S7
343	 41.07	+2	434567..434941	-	124	58584604	rpsL	Wbm0346	-	30S ribosomal protein S12
344	 33.88	0	437115..437297	-	60	58584605	-	Wbm0347	-	hypothetical protein
345	 36.47	0	438092..438889	-	265	58584606	-	Wbm0348	-	aminomethyltransferase related to GcvT
346	 37.80	+1	439037..439327	+	96	58584607	groES	Wbm0349	-	co-chaperonin GroES
347	 37.69	+1	439429..441081	+	550	58584608	groEL	Wbm0350	-	chaperonin GroEL
348	 32.54	0	441346..441849	+	167	58584609	-	Wbm0351	-	hypothetical protein
349	 34.55	0	443923..445074	-	383	58584610	-	Wbm0352	-	outer membrane protein
350	 30.92	-1	445270..445476	-	68	58584611	-	Wbm0353	-	hypothetical protein
351	 38.00	+1	446963..447433	-	156	58584612	-	Wbm0355	-	dUTPase
352	 33.12	0	447500..448441	-	313	58584613	-	Wbm0356	-	acetylglutamate kinase
353	 33.16	0	448416..448976	-	186	58584614	-	Wbm0357	-	GTPase EngB
354	 34.54	0	449132..450211	+	359	58584615	prfA	Wbm0358	-	peptide chain release factor 1
355	 34.70	0	450228..451394	-	388	58584616	-	Wbm0359	-	major facilitator superfamily permease
356	 31.76	0	452600..452980	+	126	58584617	-	Wbm0360	-	hypothetical protein
357	 36.04	0	453110..455737	+	875	58584618	-	Wbm0361	-	alanyl-tRNA synthetase
358	 33.03	0	455742..458399	-	885	58584619	-	Wbm0362	-	hypothetical protein
359	 37.06	0	458460..461864	-	1134	58584620	ileS	Wbm0363	-	isoleucyl-tRNA synthetase
360	 36.23	0	461929..463275	-	448	58584621	-	Wbm0364	-	2-methylthioadenine synthetase
361	 34.59	0	463878..464516	-	212	58584622	-	Wbm0365	-	EndoIII-related endonuclease
362	 33.33	0	464708..465211	-	167	58584623	-	Wbm0366	-	hypothetical protein
363	 37.04	0	465918..467345	-	475	58584624	-	Wbm0367	-	isocitrate dehydrogenase
364	 29.00	-1	467626..467856	+	76	58584625	-	Wbm0368	-	hypothetical protein
365	 33.73	0	468086..468844	+	252	58584626	-	Wbm0369	-	phosphatidylglycerophosphatase A, PgpA
366	 36.90	0	468889..469728	+	279	58584627	glyQ	Wbm0370	-	glycyl-tRNA synthetase subunit alpha
367	 34.04	0	469732..471840	+	702	58584628	-	Wbm0371	-	glycyl-tRNA synthetase, beta subunit
368	 34.54	0	471825..473645	+	606	58584629	-	Wbm0372	-	nuclease subunit of the excinuclease complex, UvrC
369	 35.84	0	476052..477047	-	331	58584630	-	Wbm0373	-	delta-aminolevulinic acid dehydratase
370	 32.60	0	477156..478109	-	317	58584631	-	Wbm0374	-	hypothetical protein
371	 37.91	+1	478197..479222	-	341	161899044	-	Wbm0375	-	NADH dehydrogenase subunit H
372	 38.56	+1	479206..481254	-	682	58584633	-	Wbm0376	-	NADH dehydrogenase subunit G
373	 36.62	0	481268..481480	-	70	58584634	-	Wbm0377	-	hypothetical protein
374	 33.71	0	482448..482711	-	87	58584635	-	Wbm0378	-	hypothetical protein
375	 33.76	0	482819..483283	-	154	58584636	-	Wbm0379	-	cardiolipin synthase
376	 40.05	+1	483387..484874	-	495	58584637	-	Wbm0380	-	3-polyprenyl-4-hydroxybenzoate decarboxylase, UbiD
377	 31.29	-1	484901..485242	-	113	58584638	-	Wbm0381	-	hypothetical protein
378	 30.70	-1	486677..487435	+	252	58584639	-	Wbm0382	-	protein-disulfide isomerase
379	 35.01	0	490219..491115	-	298	58584640	-	Wbm0383	-	Co/Zn/Cd efflux system component
380	 34.40	0	491487..493928	+	813	58584641	-	Wbm0384	-	extracellular metallopeptidase
381	 35.01	0	494038..494934	-	298	58584642	pyrB	Wbm0385	-	aspartate carbamoyltransferase catalytic subunit
382	 35.00	0	496430..496729	+	99	58584643	-	Wbm0386	-	XRE family transcriptional regulator
383	 37.30	0	496792..497220	+	142	58584644	-	Wbm0387	-	DNA-directed RNA polymerase subunit omega, RpoZ
384	 31.69	0	497258..497500	+	80	58584645	-	Wbm0388	-	hypothetical protein
385	 29.51	-1	497507..497794	+	95	58584646	-	Wbm0389	-	putative monovalent cation/H+ antiporter subunit G
386	 33.52	0	497796..498323	+	175	58584647	-	Wbm0390	-	putative monovalent cation/H+ antiporter subunit B
387	 33.81	0	498316..498732	+	138	58584648	-	Wbm0391	-	putative monovalent cation/H+ antiporter subunit B
388	 31.50	-1	498732..499058	+	108	58584649	-	Wbm0392	-	putative monovalent cation/H+ antiporter subunit C
389	 35.23	0	499181..501130	+	649	58584650	-	Wbm0393	-	DNA-directed RNA polymerase sigma 70 subunit, RpoD
390	 32.03	0	501555..502013	-	152	58584651	-	Wbm0394	-	ankyrin repeat-containing protein
391	 38.21	+1	503366..506029	-	887	58584652	kgd	Wbm0395	-	alpha-ketoglutarate decarboxylase
392	 35.88	0	507716..509602	-	628	58584653	-	Wbm0396	-	DNA mismatch repair ATPase MutL
393	 39.09	+1	509607..510110	-	167	58584654	-	Wbm0397	-	phosphoribosylcarboxyaminoimidazole (NCAIR) mutase, PurE
394	 34.59	0	511094..512125	-	343	58584655	-	Wbm0398	-	ABC-type Fe3+ transport system, periplasmic component
395	 34.12	0	512255..513532	-	425	58584656	-	Wbm0399	-	hypothetical protein
396	 35.47	0	513628..514422	-	264	58584657	ppnK	Wbm0400	-	inorganic polyphosphate/ATP-NAD kinase
397	 35.21	0	514454..514666	-	70	58584658	-	Wbm0401	-	ribosomal protein L31
398	 37.51	+1	514795..515775	+	326	58584659	-	Wbm0402	-	(acyl-carrier-protein) S-malonyltransferase, FabD
399	 37.25	0	515831..517336	-	501	58584660	-	Wbm0403	-	phosphoglyceromutase
400	 28.70	-2	520933..521256	+	107	58584661	-	Wbm0404	-	hypothetical protein
401	 37.37	0	523904..526606	+	900	58584662	-	Wbm0405	-	DNA gyrase subunit A
402	 37.81	+1	526711..527313	+	200	58584663	-	Wbm0406	-	Rieske Fe-S protein
403	 33.46	0	527841..528626	-	261	58584664	ksgA	Wbm0407	-	dimethyladenosine transferase
404	 34.62	0	529449..530150	+	233	58584665	-	Wbm0408	-	triosephosphate isomerase
405	 34.24	0	530282..531499	+	405	58584666	-	Wbm0409	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
406	 33.94	0	534696..535193	-	165	58584667	-	Wbm0410	-	hypothetical protein
407	 34.56	0	537214..538767	-	517	58584668	-	Wbm0411	-	AICAR transformylase/IMP cyclohydrolase PurH
408	 34.78	0	538874..540115	-	413	58584669	hisS	Wbm0412	-	histidyl-tRNA synthetase
409	 37.00	0	540112..540684	-	190	58584670	-	Wbm0413	-	NifU family protein
410	 31.63	-1	541171..542052	-	293	58584671	-	Wbm0414	-	hypothetical protein
411	 31.17	-1	542160..542528	-	122	58584672	-	Wbm0415	-	glutaredoxin
412	 33.14	0	542599..543627	+	342	58584673	-	Wbm0416	-	FAD synthase
413	 32.26	0	543624..544088	+	154	58584674	-	Wbm0417	-	lipoprotein signal peptidase
414	 34.45	0	544137..545477	+	446	58584675	-	Wbm0418	-	Zn-dependent peptidase
415	 32.72	0	545464..546774	+	436	58584676	-	Wbm0419	-	Zn-dependent peptidase
416	 38.66	+1	547672..548253	-	193	58584677	-	Wbm0420	-	folate-dependent phosphoribosylglycinamide formyltransferase PurN
34.55	MEAN

2.88	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.