IslandPathversion 1.0

IslandPath Analysis: Wolbachia endosymbiont strain TRS of Brugia malayi



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.55 STD DEV: 2.88
Wolbachia endosymbiont strain TRS of Brugia malayi, complete genome - 1..1080084
805 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
189	 33.13	0	244818..245300	+	160	58584450	-	Wbm0190	-	transcription termination factor, NusB
190	 35.23	0	245432..245695	+	87	58584451	-	Wbm0191	-	translation initiation factor 1, IF-1
191	 35.51	0	245673..246269	+	198	58584452	-	Wbm0192	-	nucleotide-binding protein implicated in inhibition of septum formation
192	 34.98	0	246261..248990	-	909	58584453	-	Wbm0193	-	hypothetical protein
193	 34.64	0	249592..251352	-	586	58584454	-	Wbm0194	-	DNA primase, DnaG
194	 35.98	0	251498..252706	+	402	58584455	-	Wbm0195	-	3-demethylubiquinone-9 3-methyltransferase
195	 38.02	+1	253249..254871	+	540	58584456	-	Wbm0196	-	methionyl-tRNA synthetase
196	 32.61	0	256625..258013	+	462	58584457	-	Wbm0197	-	Na+/alanine symporter
197	 37.78	+1	258454..258768	+	104	58584458	-	Wbm0198	-	hypothetical protein
198	 37.24	0	259354..259686	+	110	58584459	-	Wbm0199	-	hypothetical protein
199	 39.15	+1	262003..262191	+	62	58584460	-	Wbm0200	-	hypothetical protein
200	 34.36	0	262522..263688	-	388	58584461	-	Wbm0201	-	major facilitator superfamily permease
201	 35.77	0	264364..265062	+	232	58584462	-	Wbm0202	-	methylase involved in ubiquinone/menaquinone biosynthesis
202	 34.33	0	266254..267960	+	568	58584463	-	Wbm0203	-	ABC-type multidrug transport system, ATPase and permease component
203	 29.96	-1	269587..269853	-	88	58584464	-	Wbm0204	-	hypothetical protein
204	 38.69	+1	270033..271730	+	565	58584465	-	Wbm0205	-	arginyl-tRNA synthetase
205	 36.32	0	273242..274411	+	389	58584466	-	Wbm0206	-	pseudouridylate synthase, 23S RNA-specific
206	 38.79	+1	274872..275861	-	329	58584467	-	Wbm0207	-	pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase E1 component, alpha subunit
207	 37.01	0	275976..276356	+	126	58584468	-	Wbm0208	-	hypothetical protein
208	 37.34	0	276356..279025	+	889	58584469	-	Wbm0209	-	pyruvate phosphate dikinase
209	 38.21	+1	280943..281845	-	300	161899046	dapA	Wbm0210	-	dihydrodipicolinate synthase
210	 34.37	0	281855..282337	-	160	58584471	-	Wbm0211	-	single-stranded DNA-binding protein, ssb
211	 31.62	-1	282709..282942	+	77	58584472	-	Wbm0212	-	hypothetical protein
212	 29.29	-1	283449..284264	-	271	58584473	-	Wbm0213	-	hypothetical protein
213	 28.24	-2	284269..284877	-	202	58584474	-	Wbm0214	-	hypothetical protein
214	 31.39	-1	284882..286321	-	479	58584475	-	Wbm0215	-	hypothetical protein
215	 38.45	+1	287111..288733	-	540	58584476	-	Wbm0216	-	ABC-type protease secretion system, ATPase and permease component, AprD
216	 36.90	0	289041..290048	-	335	58584477	-	Wbm0217	-	metal-dependent protease with chaperone activity
217	 32.85	0	290382..290588	-	68	58584478	-	Wbm0218	-	hypothetical protein
218	 34.99	0	291217..291579	-	120	58584479	-	Wbm0219	-	hypothetical protein
219	 33.00	0	291756..292364	+	202	58584480	-	Wbm0220	-	superoxide dismutase, SodA
220	 36.81	0	292372..293637	+	421	58584481	-	Wbm0221	-	Zn-dependent peptidase
221	 34.02	0	294345..294779	+	144	58584482	-	Wbm0222	-	preprotein translocase subunit YajC
222	 36.30	0	294804..296624	+	606	58584483	-	Wbm0223	-	glucosamine 6-phosphate synthetase
223	 34.41	0	297349..297627	-	92	58584484	-	Wbm0224	-	hypothetical protein
224	 35.03	0	297708..298001	-	97	58584485	-	Wbm0225	-	hypothetical protein
225	 36.41	0	298129..299169	+	346	58584486	-	Wbm0226	-	phosphoribosylaminoimidazole synthetase
226	 31.81	0	299170..299892	-	240	58584487	-	Wbm0227	-	phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase
227	 36.58	0	299961..300668	+	235	58584488	-	Wbm0228	-	tRNA-(guanine-N1)-methyltransferase
228	 33.07	0	300652..301029	+	125	58584489	rplS	Wbm0229	-	50S ribosomal protein L19
229	 36.67	0	301051..301410	+	119	58584490	-	Wbm0230	-	hypothetical protein
230	 34.45	0	301435..302685	+	416	58584491	-	Wbm0231	-	ABC-type phosphate transport system, permease component
231	 36.22	0	302689..303486	+	265	58584492	-	Wbm0232	-	phosphoribosylformylglycinamidine synthase domain-containing protein
232	 31.72	0	304616..305233	-	205	58584493	lipB	Wbm0235	-	lipoyltransferase
233	 34.65	0	305419..306099	-	226	58584494	-	Wbm0236	-	Pentose-5-phosphate-3-epimerase
234	 33.96	0	306373..307323	-	316	58584495	-	Wbm0237	-	nucleoside-diphosphate-sugar epimerase
235	 33.70	0	307372..308739	-	455	58584496	-	Wbm0238	-	UDP-N-acetylmuramyl pentapeptide synthase
236	 36.00	0	308923..309897	+	324	58584497	-	Wbm0239	-	hypothetical protein
237	 33.60	0	309894..310262	+	122	58584498	-	Wbm0240	-	HIT family hydrolase
238	 29.94	-1	310288..310641	+	117	58584499	-	Wbm0241	-	NADH:ubiquinone oxidoreductase chain A
239	 39.84	+1	310646..311152	+	168	58584500	-	Wbm0242	-	NADH dehydrogenase subunit B
240	 33.86	0	311154..311726	+	190	58584501	-	Wbm0243	-	NADH:ubiquinone oxidoreductase chain C
241	 37.75	+1	311729..312679	+	316	58584502	-	Wbm0244	-	malate dehydrogenase
242	 35.49	0	312694..313482	-	262	58584503	-	Wbm0245	-	Mg-dependent Dnase, TadD
243	 36.63	0	313499..313984	-	161	58584504	-	Wbm0246	-	dinucleoside polyphosphate hydrolase
244	 32.42	0	314730..315056	+	108	58584505	-	Wbm0247	-	hypothetical protein
245	 35.49	0	315115..316365	+	416	58584506	-	Wbm0248	-	tyrosyl-tRNA synthetase
246	 32.13	0	316706..316954	+	82	58584507	-	Wbm0249	-	hypothetical protein
247	 35.98	0	318040..318228	+	62	58584508	-	Wbm0250	-	hypothetical protein
248	 34.86	0	318469..319059	+	196	58584509	-	Wbm0251	-	Holliday junction resolvasome, DNA-binding subunit, RuvA
249	 37.61	+1	319037..320017	+	326	58584510	ruvB	Wbm0252	-	Holliday junction DNA helicase B
250	 33.99	0	320092..321000	+	302	58584511	-	Wbm0253	-	hypothetical protein
251	 37.08	0	321033..321566	+	177	58584512	-	Wbm0254	-	3-methyladenine DNA glycosylase
252	 36.58	0	321593..322978	-	461	58584513	-	Wbm0255	-	amidophosphoribosyltransferase
253	 32.78	0	323733..324275	+	180	58584514	-	Wbm0256	-	5-formyltetrahydrofolate cyclo-ligase
254	 36.54	0	325884..328343	+	819	58584515	-	Wbm0257	-	DNA mismatch repair protein
255	 32.58	0	328410..329609	+	399	58584516	-	Wbm0258	-	ribonuclease D
256	 35.54	0	329592..330179	-	195	58584517	-	Wbm0259	-	dephospho-CoA kinase
257	 40.13	+1	330367..331749	+	460	58584518	-	Wbm0260	-	2-nitropropane dioxygenase-like protein
258	 35.16	0	332005..332277	+	90	58584519	-	Wbm0261	-	hypothetical protein
259	 33.86	0	332279..332656	+	125	58584520	-	Wbm0262	-	hypothetical protein
260	 37.59	+1	333919..336735	+	938	58584521	-	Wbm0263	-	excinuclease ATPase subunit, UvrA
261	 38.97	+1	337109..337303	+	64	58584522	-	Wbm0264	-	hypothetical protein
262	 29.72	-1	337613..337999	+	128	58584523	-	Wbm0265	-	hypothetical protein
263	 37.17	0	343063..345720	+	885	58584524	secA	Wbm0266	-	preprotein translocase subunit SecA
264	 36.24	0	346460..347455	-	331	58584525	nrdF	Wbm0267	-	ribonucleotide-diphosphate reductase subunit beta
265	 31.85	0	347588..347923	+	111	58584526	-	Wbm0268	-	small protein A, tmRNA-binding
266	 33.73	0	348899..349147	-	82	58584527	-	Wbm0269	-	hypothetical protein
267	 30.43	-1	349144..349350	-	68	58584528	-	Wbm0270	-	hypothetical protein
268	 38.34	+1	350302..353439	-	1045	58584529	-	Wbm0271	-	phosphoribosylformylglycinamidine synthase domain-containing protein
269	 33.63	0	353537..356203	+	888	58584530	-	Wbm0272	-	RecB exonuclease
270	 36.09	0	357011..358318	+	435	58584531	-	Wbm0273	-	adenylosuccinate synthetase
271	 35.38	0	359503..359697	+	64	58584532	-	Wbm0274	-	hypothetical protein
272	 33.33	0	360122..360850	-	242	58584533	-	Wbm0275	-	glutamine synthetase
273	 33.77	0	361157..362539	+	460	58584534	dnaA	Wbm0276	-	chromosomal replication initiation protein
274	 33.97	0	362563..363813	-	416	58584535	-	Wbm0277	-	calcineurin-like phosphoesterase
275	 33.80	0	364122..365204	+	360	58584536	-	Wbm0278	-	GTP cyclohydrolase II
276	 29.82	-1	365277..365960	+	227	58584537	-	Wbm0279	-	Type IV secretory pathway, component VirB8
277	 31.97	0	365947..366753	+	268	58584538	-	Wbm0280	-	Type IV secretory pathway, component VirB9
278	 37.54	+1	366770..368266	+	498	58584539	-	Wbm0281	-	Type IV secretory pathway, VirB10 component
279	 37.80	+1	368268..369275	+	335	58584540	-	Wbm0282	-	Type IV secretory pathway, VirB11 component
280	 36.58	0	369289..371319	+	676	58584541	-	Wbm0283	-	Type IV secretory pathway, VirD4 component
281	 35.34	0	371438..372283	+	281	58584542	-	Wbm0284	-	Outer surface protein Wsp
282	 35.58	0	372470..373405	-	311	58584543	-	Wbm0285	-	methylase of polypeptide chain release factor
283	 36.90	0	374614..376602	+	662	58584544	-	Wbm0286	-	cytochrome c biogenesis factor
284	 38.62	+1	376943..377188	+	81	58584545	-	Wbm0287	-	ankyrin repeat-containing protein
285	 34.30	0	377751..378473	-	240	161899045	recO	Wbm0288	-	DNA repair protein RecO
286	 35.78	0	378502..379032	-	176	58584547	-	Wbm0289	-	carbonic anhydrase
287	 33.96	0	379152..380264	+	370	58584548	-	Wbm0290	-	D-alanyl-D-alanine carboxypeptidase
288	 33.53	0	380929..381957	+	342	58584549	-	Wbm0291	-	membrane protein WF-2
34.55	MEAN

2.88	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.