IslandPathversion 1.0

IslandPath Analysis: Wolbachia endosymbiont strain TRS of Brugia malayi



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.55 STD DEV: 2.88
Wolbachia endosymbiont strain TRS of Brugia malayi, complete genome - 1..1080084
805 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
113	 35.00	0	148853..149392	+	179	58584374	-	Wbm0114	-	N-formylmethionyl-tRNA deformylase
114	 36.95	0	149382..150182	+	266	58584375	-	Wbm0115	-	Uracil-DNA glycosylase
115	 29.84	-1	151079..151336	-	85	58584376	-	Wbm0116	-	hypothetical protein
116	 37.22	0	152403..153071	-	222	58584377	-	Wbm0117	-	lipoprotein
117	 34.29	0	153077..154747	+	556	58584378	-	Wbm0118	-	UDP-N-acetylmuramate-alanine ligase
118	 38.73	+1	154749..156026	+	425	58584379	-	Wbm0119	-	enolase
119	 35.29	0	156014..157036	+	340	58584380	obgE	Wbm0120	-	GTPase ObgE
120	 30.96	-1	157131..159701	-	856	58584381	-	Wbm0121	-	hypothetical protein
121	 33.53	0	159698..161191	-	497	58584382	-	Wbm0122	-	hypothetical protein
122	 38.45	+1	162935..163462	-	175	58584383	-	Wbm0123	-	cytochrome c2
123	 38.16	+1	164283..166022	+	579	58584384	-	Wbm0124	-	single-stranded DNA-specific exonuclease RecJ
124	 40.84	+2	166033..167205	-	390	58584385	-	Wbm0125	-	NADH dehydrogenase subunit D
125	 31.93	0	168004..169074	-	356	58584386	recF	Wbm0126	-	recombination protein F
126	 32.05	0	169091..169558	-	155	58584387	-	Wbm0127	-	peroxiredoxin
127	 29.76	-1	169618..171045	-	475	58584388	-	Wbm0128	-	membrane associated signal transduction histidine kinase
128	 35.76	0	171111..172304	+	397	58584389	-	Wbm0129	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
129	 30.37	-1	172294..172800	+	168	58584390	-	Wbm0130	-	RimM protein, required for 16S rRNA processing
130	 34.39	0	172864..173430	+	188	58584391	-	Wbm0131	-	translation elongation factor P, EF-P
131	 35.91	0	173439..174137	+	232	58584392	-	Wbm0132	-	fructose-1,6-bisphosphatase
132	 37.57	+1	174129..175331	-	400	58584393	-	Wbm0133	-	5-aminolevulinate synthase
133	 35.74	0	175968..176216	-	82	58584394	-	Wbm0134	-	hypothetical protein
134	 37.04	0	176454..176723	-	89	58584395	-	Wbm0135	-	hypothetical protein
135	 33.33	0	178100..178654	-	184	58584396	-	Wbm0136	-	hypothetical protein
136	 30.74	-1	178688..178996	-	102	58584397	-	Wbm0137	-	hypothetical protein
137	 37.62	+1	179189..181102	-	637	58584398	-	Wbm0138	-	heat shock protein 90
138	 29.44	-1	182083..182262	-	59	58584399	-	Wbm0139	-	hypothetical protein
139	 38.84	+1	182298..182642	-	114	58584400	-	Wbm0140	-	hypothetical protein
140	 40.00	+1	182626..182820	-	64	58584401	-	Wbm0141	-	hypothetical protein
141	 32.22	0	183152..183691	+	179	58584402	-	Wbm0142	-	phosphatase
142	 32.53	0	183691..184185	+	164	58584403	-	Wbm0143	-	hypothetical protein
143	 34.34	0	184267..184662	+	131	58584404	-	Wbm0144	-	bacterioferritin/cytochrome b1
144	 36.82	0	184837..185352	+	171	58584405	-	Wbm0145	-	SurF1 family protein
145	 37.06	0	185400..187118	-	572	58584406	-	Wbm0146	-	Kef-type K+ transport system, membrane component
146	 31.76	0	187124..187696	-	190	58584407	-	Wbm0147	-	thiol-disulfide isomerase
147	 35.76	0	187805..188422	+	205	58584408	-	Wbm0148	-	thymidylate kinase
148	 34.90	0	188992..189183	-	63	58584409	-	Wbm0149	-	hypothetical protein
149	 37.27	0	189447..191276	-	609	58584410	-	Wbm0150	-	ATP-dependent Zn protease, HflB
150	 34.34	0	191289..192584	-	431	58584411	-	Wbm0151	-	ATPase
151	 34.17	0	192758..193237	-	159	58584412	-	Wbm0152	-	Outer membrane protein, pal-like
152	 32.70	0	193507..194934	+	475	58584413	-	Wbm0153	-	Zn-dependent carboxypeptidase
153	 38.35	+1	194956..196032	+	358	58584414	-	Wbm0154	-	Actin-like ATPase involved in cell morphogenesis, MreB
154	 38.26	+1	196746..197903	+	385	58584415	-	Wbm0155	-	tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
155	 31.09	-1	199597..199908	-	103	58584416	-	Wbm0156	-	hypothetical protein
156	 31.86	0	200200..200403	-	67	58584417	-	Wbm0157	-	hypothetical protein
157	 36.03	0	201650..202576	+	308	58584418	glpX	Wbm0158	-	fructose 1,6-bisphosphatase II
158	 37.41	0	203574..204677	-	367	58584419	-	Wbm0159	-	translation-associated GTPase
159	 36.25	0	205874..207073	+	399	58584420	-	Wbm0160	-	tRNA nucleotidyltransferase/poly(A) polymerase
160	 32.42	0	207096..207314	-	72	58584421	-	Wbm0161	-	hypothetical protein
161	 28.42	-2	207372..207554	-	60	58584422	-	Wbm0162	-	hypothetical protein
162	 29.89	-1	207502..207762	-	86	58584423	-	Wbm0163	-	hypothetical protein
163	 36.52	0	207884..208165	-	93	58584424	-	Wbm0164	-	hypothetical protein
164	 35.52	0	208171..208353	-	60	58584425	-	Wbm0165	-	hypothetical protein
165	 36.36	0	209126..209356	-	76	58584426	-	Wbm0166	-	hypothetical protein
166	 35.69	0	211325..212596	+	423	58584427	-	Wbm0167	-	major facilitator superfamily permease
167	 37.04	0	213627..214058	-	143	58584428	-	Wbm0168	-	cytosine/adenosine deaminase
168	 35.99	0	214086..215705	-	539	58584429	-	Wbm0169	-	CTP synthetase
169	 30.60	-1	215705..216070	-	121	58584430	secG	Wbm0170	-	preprotein translocase subunit SecG
170	 34.51	0	216409..216663	+	84	58584431	-	Wbm0171	-	RadC-like DNA repair protein
171	 34.61	0	218134..221493	-	1119	58584432	-	Wbm0172	-	ATP-dependent exoDNAse (exonuclease V) beta subunit, RecB
172	 35.76	0	221574..222440	+	288	58584433	-	Wbm0173	-	4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase
173	 29.23	-1	222444..222809	+	121	58584434	-	Wbm0174	-	hypothetical protein
174	 31.11	-1	222811..223620	+	269	58584435	-	Wbm0175	-	ABC-type Mn2+/Zn2+ transport system, permease component
175	 31.95	0	223965..224975	+	336	58584436	-	Wbm0176	-	DNA polymerase III delta subunit
176	 37.86	+1	226355..227149	+	264	58584437	-	Wbm0177	-	dihydrodipicolinate reductase
177	 35.84	0	227146..227904	+	252	58584438	-	Wbm0178	-	ABC-type phosphate transport system, ATPase component
178	 35.13	0	228435..229604	-	389	58584439	-	Wbm0179	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
179	 41.77	+2	229703..230200	-	165	58584440	-	Wbm0180	-	hypothetical protein
180	 37.47	+1	230606..233167	+	853	58584441	-	Wbm0181	-	ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
181	 34.71	0	233194..237927	+	1577	58584442	-	Wbm0182	-	NAD-specific glutamate dehydrogenase
182	 28.80	-1	237933..238241	+	102	58584443	-	Wbm0183	-	hypothetical protein
183	 35.44	0	238201..239577	+	458	161899047	pleD	Wbm0184	-	response regulator PleD
184	 28.42	-2	240660..240944	+	94	58584445	-	Wbm0185	-	hypothetical protein
185	 32.88	0	241051..241932	+	293	58584446	secF	Wbm0186	-	preprotein translocase subunit SecF
186	 30.54	-1	241909..242481	-	190	58584447	-	Wbm0187	-	aspartyl protease
187	 30.77	-1	242694..244412	+	572	58584448	-	Wbm0188	-	putative inner membrane protein translocase component YidC
188	 35.66	0	244390..244818	+	142	58584449	ribH	Wbm0189	-	riboflavin synthase subunit beta
189	 33.13	0	244818..245300	+	160	58584450	-	Wbm0190	-	transcription termination factor, NusB
190	 35.23	0	245432..245695	+	87	58584451	-	Wbm0191	-	translation initiation factor 1, IF-1
191	 35.51	0	245673..246269	+	198	58584452	-	Wbm0192	-	nucleotide-binding protein implicated in inhibition of septum formation
192	 34.98	0	246261..248990	-	909	58584453	-	Wbm0193	-	hypothetical protein
193	 34.64	0	249592..251352	-	586	58584454	-	Wbm0194	-	DNA primase, DnaG
194	 35.98	0	251498..252706	+	402	58584455	-	Wbm0195	-	3-demethylubiquinone-9 3-methyltransferase
195	 38.02	+1	253249..254871	+	540	58584456	-	Wbm0196	-	methionyl-tRNA synthetase
196	 32.61	0	256625..258013	+	462	58584457	-	Wbm0197	-	Na+/alanine symporter
197	 37.78	+1	258454..258768	+	104	58584458	-	Wbm0198	-	hypothetical protein
198	 37.24	0	259354..259686	+	110	58584459	-	Wbm0199	-	hypothetical protein
199	 39.15	+1	262003..262191	+	62	58584460	-	Wbm0200	-	hypothetical protein
200	 34.36	0	262522..263688	-	388	58584461	-	Wbm0201	-	major facilitator superfamily permease
201	 35.77	0	264364..265062	+	232	58584462	-	Wbm0202	-	methylase involved in ubiquinone/menaquinone biosynthesis
202	 34.33	0	266254..267960	+	568	58584463	-	Wbm0203	-	ABC-type multidrug transport system, ATPase and permease component
203	 29.96	-1	269587..269853	-	88	58584464	-	Wbm0204	-	hypothetical protein
204	 38.69	+1	270033..271730	+	565	58584465	-	Wbm0205	-	arginyl-tRNA synthetase
205	 36.32	0	273242..274411	+	389	58584466	-	Wbm0206	-	pseudouridylate synthase, 23S RNA-specific
206	 38.79	+1	274872..275861	-	329	58584467	-	Wbm0207	-	pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase E1 component, alpha subunit
207	 37.01	0	275976..276356	+	126	58584468	-	Wbm0208	-	hypothetical protein
208	 37.34	0	276356..279025	+	889	58584469	-	Wbm0209	-	pyruvate phosphate dikinase
209	 38.21	+1	280943..281845	-	300	161899046	dapA	Wbm0210	-	dihydrodipicolinate synthase
210	 34.37	0	281855..282337	-	160	58584471	-	Wbm0211	-	single-stranded DNA-binding protein, ssb
211	 31.62	-1	282709..282942	+	77	58584472	-	Wbm0212	-	hypothetical protein
212	 29.29	-1	283449..284264	-	271	58584473	-	Wbm0213	-	hypothetical protein
34.55	MEAN

2.88	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.