IslandPath Analysis: Vibrio vulnificus CMCP6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.71   STD DEV: 3.40
Vibrio vulnificus CMCP6 chromosome II, complete sequence - 1..1844853
1557 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
930	 46.84	0	1080633..1081646	-	337	27367394	-	VV2_1000	-	GGDEF domain-containing protein
931	 49.27	0	1082890..1083504	+	204	27367395	-	VV2_1003	-	DNA polymerase III, alpha subunit
932	 53.39	+1	1083544..1084236	-	230	27367396	-	VV2_1004	-	peptide ABC transporter ATPase
933	 54.13	+1	1084259..1085542	-	427	27367397	-	VV2_1005	-	peptide ABC transporter permease
934	 52.18	+1	1085545..1086759	-	404	27367398	-	VV2_1006	-	peptide ABC transporter permease
935	 52.75	+1	1086756..1088027	-	423	27367399	-	VV2_1007	-	Outer membrane protein
936	 52.51	+1	1088020..1089156	-	378	27367400	-	VV2_1008	-	membrane-fusion protein
937	 45.50	0	1089468..1089845	+	125	27367401	-	VV2_1009	-	hypothetical protein
938	 51.70	+1	1090038..1090772	+	244	27367402	-	VV2_1010	-	hypothetical protein
939	 51.82	+1	1090913..1091680	+	255	27367403	-	VV2_1011	-	ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component
940	 51.42	+1	1091716..1092594	+	292	27367404	-	VV2_1012	-	ABC-type Fe3+-hydroxamate transport system, periplasmic component
941	 54.55	+2	1092591..1094588	+	665	27367405	-	VV2_1013	-	iron-hydroxamate transporter permease subunit
942	 49.90	0	1094751..1095716	+	321	27367406	-	VV2_1014	-	transcriptional regulator
943	 49.51	0	1096054..1098210	+	718	27367407	-	VV2_1016	-	Outer membrane receptor protein
944	 50.76	0	1098473..1099327	-	284	27367408	gatY	VV2_1017	-	tagatose-bisphosphate aldolase
945	 54.61	+2	1099318..1100511	-	397	27367409	-	VV2_1018	-	N-acetylglucosamine-6-phosphate deacetylase
946	 54.17	+1	1100501..1100956	-	151	27367410	-	VV2_1019	-	phosphotransferase system, mannose/fructose-specific component IIA
947	 53.45	+1	1101037..1101921	-	294	27367411	-	VV2_1020	-	phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID
948	 52.90	+1	1101911..1102687	-	258	27367412	-	VV2_1021	-	phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC
949	 50.00	0	1102704..1103177	-	157	27367413	-	VV2_1022	-	N-acetylgalactosamine-specific PTS system transporter subunit IIB
950	 53.83	+1	1103189..1104364	-	391	27367414	-	VV2_1023	-	phosphosugar isomerase
951	 52.52	+1	1104364..1105671	-	435	27367415	-	VV2_1024	-	tagatose 6-phosphate kinase
952	 52.22	+1	1105680..1106468	-	262	27367416	-	VV2_1025	-	sugar metabolism transcriptional regulator
953	 47.08	0	1106800..1107570	-	256	27367417	-	VV2_1026	-	sugar metabolism transcriptional regulator
954	 52.35	+1	1107659..1108573	-	304	27367418	-	VV2_1027	-	DMT family permease
955	 50.28	0	1108675..1109388	-	237	27367419	-	VV2_1028	-	AraC-type DNA-binding domain-containing protein
956	 47.88	0	1109589..1110344	+	251	27367420	-	VV2_1029	-	LPS biosynthesis choline kinase
957	 48.92	0	1110400..1111599	-	399	27367421	-	VV2_1030	-	diaminopimelate decarboxylase
958	 50.66	0	1112038..1112943	+	301	27367422	-	VV2_1031	-	transcriptional regulator
959	 49.75	0	1113087..1115054	+	655	27367423	-	VV2_1032	-	Alkyl sulfatase
960	 49.91	0	1115179..1115715	-	178	27367424	-	VV2_1033	-	acetyltransferase
961	 46.63	0	1115857..1116390	+	177	27367425	-	VV2_1034	-	dihydrofolate reductase
962	 44.99	0	1116484..1117092	+	202	27367426	-	VV2_1035	-	ABC transporter permease
963	 45.17	0	1117156..1118160	-	334	27367427	-	VV2_1036	-	TPR repeat-containing protein
964	 49.17	0	1118212..1118811	+	199	27367428	-	VV2_1037	-	peptide methionine sulfoxide reductase domain-containing protein
965	 49.81	0	1118808..1119335	+	175	27367429	-	VV2_1038	-	peptide methionine sulfoxide reductase
966	 46.18	0	1119488..1119736	+	82	27367430	-	VV2_1039	-	hypothetical protein
967	 44.96	0	1119923..1120180	+	85	27367431	-	VV2_1040	-	hypothetical protein
968	 50.92	0	1120257..1121609	-	450	27367432	-	VV2_1041	-	ABC-type sugar transport system, periplasmic component
969	 53.42	+1	1121618..1123603	-	661	27367433	-	VV2_1042	-	methyl-accepting chemotaxis protein
970	 40.43	-2	1124145..1124849	+	234	27367434	-	VV2_1043	-	hypothetical protein
971	 48.77	0	1124916..1125401	-	161	27367435	-	VV2_1044	-	hypothetical protein
972	 47.41	0	1125446..1125715	-	89	27367436	-	VV2_1045	-	glutaredoxin
973	 48.53	0	1125830..1126678	+	282	27367437	-	VV2_1046	-	AraC-type DNA-binding domain-containing protein
974	 45.89	0	1126941..1128143	+	400	27367438	-	VV2_1047	-	transposase
975	 46.84	0	1128305..1129000	+	231	27367439	-	VV2_1048	-	hypothetical protein
976	 47.33	0	1129100..1130035	-	311	27367440	-	VV2_1049	-	transcriptional regulator
977	 49.62	0	1130136..1131449	+	437	27367441	-	VV2_1050	-	Alpha-galactosidase/6-phospho-beta-glucosidase
978	 49.33	0	1131533..1132132	-	199	27367442	-	VV2_1051	-	putative threonine efflux protein
979	 47.41	0	1132254..1132736	+	160	27367443	-	VV2_1052	-	transcriptional regulator
980	 49.26	0	1132760..1133575	-	271	27367444	-	VV2_1053	-	AraC-type DNA-binding domain-containing protein
981	 42.80	-1	1133660..1133902	+	80	27367445	-	VV2_1054	-	hypothetical protein
982	 50.29	0	1133948..1134637	+	229	27367446	-	VV2_1055	-	hypothetical protein
983	 41.80	-1	1134895..1136040	-	381	27367447	-	VV2_1056	-	hypothetical protein
984	 39.22	-2	1136557..1136913	+	118	27367448	-	VV2_1057	-	hypothetical protein
985	 43.62	-1	1137377..1137658	-	93	27367449	-	VV2_1059	-	hypothetical protein
986	 50.90	0	1138350..1139351	+	333	27367450	-	VV2_1060	-	transcriptional regulator
987	 48.98	0	1139489..1140964	+	491	27367451	-	VV2_1061	-	Na+/H+ antiporter
988	 48.16	0	1140977..1142143	+	388	27367452	-	VV2_1062	-	PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities
989	 49.48	0	1142219..1143457	-	412	27367453	-	VV2_1063	-	superfamily II DNA/RNA helicase
990	 51.26	+1	1143665..1144852	-	395	27367454	-	VV2_1064	-	mannonate dehydratase
991	 46.72	0	1144982..1145773	-	263	27367455	-	VV2_1065	-	transcriptional regulator
992	 49.63	0	1145881..1146819	-	312	27367456	-	VV2_1066	-	TRAP-type C4-dicarboxylate transport system, periplasmic component
993	 47.48	0	1147187..1147702	+	171	27367457	-	VV2_1067	-	TRAP-type C4-dicarboxylate transport system, small permease component
994	 51.15	+1	1147714..1149015	+	433	27367458	-	VV2_1068	-	TRAP-type C4-dicarboxylate transport system, large permease component
995	 52.05	+1	1149067..1150530	+	487	27367459	-	VV2_1069	-	mannitol-1-phosphate/altronate dehydrogenase
996	 50.04	0	1150543..1151955	+	470	27367460	-	VV2_1070	-	glucuronate isomerase
997	 50.61	0	1151959..1152936	+	325	27367461	-	VV2_1071	-	ribokinase family sugar kinase
998	 49.05	0	1152946..1153575	+	209	27367462	-	VV2_1072	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
999	 50.19	0	1153670..1154191	+	173	27367463	-	VV2_1073	-	hypothetical protein
1000	 50.06	0	1154167..1155075	-	302	27367464	-	VV2_1074	-	transcriptional regulator
1001	 53.72	+1	1155209..1155880	+	223	27367465	-	VV2_1075	-	dehydrogenase
1002	 48.73	0	1155915..1156544	+	209	27367466	-	VV2_1076	-	glutaredoxin 2
1003	 51.96	+1	1156555..1157649	+	364	27367467	-	VV2_1077	-	NADH:flavin oxidoreductase
1004	 47.00	0	1157695..1158762	-	355	161501860	-	VV2_1078	-	putative L-ascorbate 6-phosphate lactonase
1005	 48.54	0	1158886..1159641	-	251	27367469	-	VV2_1079	-	transcriptional repressor UlaR
1006	 49.91	0	1160028..1161788	+	586	27367470	ulaA	VV2_1080	-	ascorbate-specific PTS system enzyme IIC/IIB
1007	 52.83	+1	1161928..1162404	+	158	27367471	-	VV2_1081	-	phosphotransferase system mannitol/fructose-specific IIA domain-containing protein
1008	 52.24	+1	1162414..1163106	+	230	27367472	araD	VV2_1082	-	L-ribulose-5-phosphate 4-epimerase
1009	 49.03	0	1163111..1163932	+	273	27367473	-	VV2_1083	-	HAD superfamily hydrolase
1010	 50.46	0	1163938..1164585	+	215	27367474	ulaD	VV2_1084	-	3-keto-L-gulonate-6-phosphate decarboxylase
1011	 50.34	0	1164594..1165475	+	293	27367475	-	VV2_1085	-	putative L-xylulose 5-phosphate 3-epimerase
1012	 42.80	-1	1165662..1166126	+	154	27367476	-	VV2_1086	-	hypothetical protein
1013	 50.82	0	1166213..1167190	-	325	27367477	-	VV2_1087	-	hypothetical protein
1014	 52.04	+1	1167526..1169385	+	619	27367478	-	VV2_1089	-	ABC-type multidrug transport system, ATPase and permease component
1015	 53.02	+1	1169453..1171504	-	683	27367479	-	VV2_1090	-	hypothetical protein
1016	 51.26	+1	1171573..1173759	-	728	27367480	-	VV2_1091	-	hypothetical protein
1017	 51.45	+1	1173826..1174995	-	389	27367481	-	VV2_1092	-	hypothetical protein
1018	 53.41	+1	1175175..1175936	-	253	27367482	-	VV2_1093	-	2-deoxy-D-gluconate 3-dehydrogenase
1019	 52.07	+1	1176067..1177128	-	353	27367483	-	VV2_1094	-	galactose-1-phosphate uridylyltransferase
1020	 55.46	+2	1177145..1178161	-	338	27367484	-	VV2_1095	-	UDP-glucose 4-epimerase
1021	 50.12	0	1178164..1179789	-	541	27367485	-	VV2_1096	-	Sulfate permease
1022	 48.54	0	1180930..1182369	+	479	27367486	-	VV2_1097	-	hypothetical protein
1023	 52.02	+1	1182536..1182733	+	65	27367487	-	VV2_1098	-	CBS domain-containing protein
1024	 49.10	0	1182830..1184776	-	648	27367488	-	VV2_1099	-	methyl-accepting chemotaxis protein
1025	 50.91	0	1184868..1186568	-	566	27367489	-	VV2_1100	-	ATPase component of various ABC-type transport system
1026	 50.73	0	1186571..1187731	-	386	27367490	-	VV2_1101	-	ABC-type dipeptide/oligopeptide/nickel transport system, permease component
1027	 50.10	0	1187734..1188705	-	323	27367491	-	VV2_1102	-	ABC-type dipeptide/oligopeptide/nickel transport system, permease component
1028	 49.53	0	1189695..1191614	-	639	27367492	-	VV2_1104	-	ABC-type dipeptide transport system, periplasmic component
1029	 52.90	+1	1191682..1193403	-	573	27367493	-	VV2_1105	-	hypothetical protein
47.71	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.