IslandPath Analysis: Vibrio vulnificus CMCP6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.71   STD DEV: 3.40
Vibrio vulnificus CMCP6 chromosome II, complete sequence - 1..1844853
1557 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
881	 47.13	0	1024187..1024534	-	115	161501861	-	VV2_0950	-	hypothetical protein
882	 49.22	0	1024664..1024984	-	106	27367346	-	VV2_0951	-	translation initiation factor 1
883	 53.14	+1	1025250..1026890	+	546	27367347	-	VV2_0952	-	hypothetical protein
884	 46.08	0	1026946..1027902	-	318	27367348	-	VV2_0953	-	transcriptional regulator
885	 44.82	0	1028164..1028877	-	237	27367349	-	VV2_0954	-	hypothetical protein
886	 51.01	0	1029076..1029420	+	114	27367350	-	VV2_0955	-	hypothetical protein
887	 51.03	0	1029452..1030231	-	259	27367351	-	VV2_0956	-	AraC-type DNA-binding domain-containing protein
888	 50.95	0	1030327..1031484	+	385	27367352	-	VV2_0957	-	major facilitator superfamily permease
889	 50.54	0	1032965..1033795	+	276	27367353	-	VV2_0958	-	DMT family permease
890	 44.94	0	1033944..1034417	+	157	27367354	-	VV2_0959	-	ATPase involved in DNA repair
891	 48.15	0	1034575..1035222	+	215	27367355	-	VV2_0960	-	hypothetical protein
892	 49.54	0	1035476..1036339	+	287	27367356	-	VV2_0961	-	DMT family permease
893	 47.18	0	1036317..1037096	-	259	27367357	-	VV2_0962	-	flavodoxin reductase family 1 protein
894	 44.37	0	1037291..1037725	+	144	27367358	-	VV2_0963	-	thioesterase
895	 51.05	0	1037981..1038928	+	315	27367359	-	VV2_0964	-	transcriptional regulator
896	 46.94	0	1038911..1039204	-	97	27367360	-	VV2_0965	-	hypothetical protein
897	 49.39	0	1039218..1039871	-	217	27367361	-	VV2_0966	-	dihydropteridine reductase
898	 48.73	0	1040136..1041434	+	432	27367362	-	VV2_0967	-	hydrolase/acyltransferase
899	 47.70	0	1041516..1042712	+	398	27367363	-	VV2_0968	-	superfamily II DNA/RNA helicase
900	 32.86	-2	1042759..1042968	-	69	27367364	-	VV2_0969	-	TPR repeat-containing protein
901	 47.19	0	1043043..1043879	+	278	27367365	-	VV2_0970	-	hydrolase/acyltransferase
902	 46.33	0	1043979..1044863	-	294	27367366	-	VV2_0971	-	hypothetical protein
903	 50.17	0	1045416..1046318	-	300	27367367	-	VV2_0972	-	transglutaminase-like enzyme
904	 51.58	+1	1046457..1046993	+	178	27367368	-	VV2_0973	-	hypothetical protein
905	 49.73	0	1047076..1048905	-	609	27367369	-	VV2_0974	-	Zinc metalloprotease
906	 51.87	+1	1049254..1050240	+	328	27367370	-	VV2_0975	-	phosphoglycerate dehydrogenase
907	 44.98	0	1050344..1050592	+	82	27367371	-	VV2_0976	-	transcriptional antiterminator
908	 47.49	0	1050819..1051475	+	218	27367372	-	VV2_0977	-	hypothetical protein
909	 44.74	0	1051489..1051821	+	110	27367373	-	VV2_0978	-	hypothetical protein
910	 46.16	0	1051946..1053691	-	581	27367374	-	VV2_0979	-	methyl-accepting chemotaxis protein
911	 48.88	0	1053803..1057765	-	1320	27367375	-	VV2_0980	-	FOG: CheY-like receiver
912	 48.53	0	1057903..1058994	+	363	27367376	-	VV2_0981	-	response regulator
913	 46.31	0	1059193..1059531	+	112	27367377	-	VV2_0982	-	Acyl-CoA synthetase
914	 52.04	+1	1059856..1061058	-	400	27367378	-	VV2_0983	-	hypothetical protein
915	 52.62	+1	1061124..1063244	-	706	27367379	-	VV2_0984	-	TRAP-type uncharacterized transport system, fused permease component
916	 51.66	+1	1063318..1064310	-	330	27367380	-	VV2_0985	-	TRAP-type uncharacterized transport system, periplasmic component
917	 54.90	+2	1064764..1066140	-	458	27367381	-	VV2_0986	-	response regulator
918	 53.57	+1	1066279..1068339	+	686	27367382	-	VV2_0987	-	Signal transduction histidine kinase
919	 53.57	+1	1068393..1068812	-	139	27367383	-	VV2_0988	-	hypothetical protein
920	 50.61	0	1068871..1070832	-	653	27367384	-	VV2_0989	-	Alkyl sulfatase
921	 49.08	0	1071078..1071458	+	126	27367385	-	VV2_0990	-	hypothetical protein
922	 51.72	+1	1071545..1072240	+	231	27367386	-	VV2_0991	-	response regulator
923	 51.07	0	1072230..1073582	+	450	27367387	-	VV2_0992	-	Signal transduction histidine kinase
924	 52.15	+1	1073576..1074436	-	286	27367388	-	VV2_0993	-	transcriptional regulator
925	 52.39	+1	1074536..1075600	+	354	27367389	-	VV2_0994	-	multidrug resistance efflux pump
926	 50.99	0	1075610..1076617	+	335	27367390	-	VV2_0995	-	major facilitator superfamily permease
927	 53.33	+1	1076742..1077776	-	344	27367391	-	VV2_0996	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
928	 50.59	0	1077801..1078901	-	366	27367392	-	VV2_0997	-	hypothetical protein
929	 41.79	-1	1079695..1080309	+	204	27367393	-	VV2_0999	-	Outer membrane protein
930	 46.84	0	1080633..1081646	-	337	27367394	-	VV2_1000	-	GGDEF domain-containing protein
931	 49.27	0	1082890..1083504	+	204	27367395	-	VV2_1003	-	DNA polymerase III, alpha subunit
932	 53.39	+1	1083544..1084236	-	230	27367396	-	VV2_1004	-	peptide ABC transporter ATPase
933	 54.13	+1	1084259..1085542	-	427	27367397	-	VV2_1005	-	peptide ABC transporter permease
934	 52.18	+1	1085545..1086759	-	404	27367398	-	VV2_1006	-	peptide ABC transporter permease
935	 52.75	+1	1086756..1088027	-	423	27367399	-	VV2_1007	-	Outer membrane protein
936	 52.51	+1	1088020..1089156	-	378	27367400	-	VV2_1008	-	membrane-fusion protein
937	 45.50	0	1089468..1089845	+	125	27367401	-	VV2_1009	-	hypothetical protein
938	 51.70	+1	1090038..1090772	+	244	27367402	-	VV2_1010	-	hypothetical protein
939	 51.82	+1	1090913..1091680	+	255	27367403	-	VV2_1011	-	ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component
940	 51.42	+1	1091716..1092594	+	292	27367404	-	VV2_1012	-	ABC-type Fe3+-hydroxamate transport system, periplasmic component
941	 54.55	+2	1092591..1094588	+	665	27367405	-	VV2_1013	-	iron-hydroxamate transporter permease subunit
942	 49.90	0	1094751..1095716	+	321	27367406	-	VV2_1014	-	transcriptional regulator
943	 49.51	0	1096054..1098210	+	718	27367407	-	VV2_1016	-	Outer membrane receptor protein
944	 50.76	0	1098473..1099327	-	284	27367408	gatY	VV2_1017	-	tagatose-bisphosphate aldolase
945	 54.61	+2	1099318..1100511	-	397	27367409	-	VV2_1018	-	N-acetylglucosamine-6-phosphate deacetylase
946	 54.17	+1	1100501..1100956	-	151	27367410	-	VV2_1019	-	phosphotransferase system, mannose/fructose-specific component IIA
947	 53.45	+1	1101037..1101921	-	294	27367411	-	VV2_1020	-	phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID
948	 52.90	+1	1101911..1102687	-	258	27367412	-	VV2_1021	-	phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC
949	 50.00	0	1102704..1103177	-	157	27367413	-	VV2_1022	-	N-acetylgalactosamine-specific PTS system transporter subunit IIB
950	 53.83	+1	1103189..1104364	-	391	27367414	-	VV2_1023	-	phosphosugar isomerase
951	 52.52	+1	1104364..1105671	-	435	27367415	-	VV2_1024	-	tagatose 6-phosphate kinase
952	 52.22	+1	1105680..1106468	-	262	27367416	-	VV2_1025	-	sugar metabolism transcriptional regulator
953	 47.08	0	1106800..1107570	-	256	27367417	-	VV2_1026	-	sugar metabolism transcriptional regulator
954	 52.35	+1	1107659..1108573	-	304	27367418	-	VV2_1027	-	DMT family permease
955	 50.28	0	1108675..1109388	-	237	27367419	-	VV2_1028	-	AraC-type DNA-binding domain-containing protein
956	 47.88	0	1109589..1110344	+	251	27367420	-	VV2_1029	-	LPS biosynthesis choline kinase
957	 48.92	0	1110400..1111599	-	399	27367421	-	VV2_1030	-	diaminopimelate decarboxylase
958	 50.66	0	1112038..1112943	+	301	27367422	-	VV2_1031	-	transcriptional regulator
959	 49.75	0	1113087..1115054	+	655	27367423	-	VV2_1032	-	Alkyl sulfatase
960	 49.91	0	1115179..1115715	-	178	27367424	-	VV2_1033	-	acetyltransferase
961	 46.63	0	1115857..1116390	+	177	27367425	-	VV2_1034	-	dihydrofolate reductase
962	 44.99	0	1116484..1117092	+	202	27367426	-	VV2_1035	-	ABC transporter permease
963	 45.17	0	1117156..1118160	-	334	27367427	-	VV2_1036	-	TPR repeat-containing protein
964	 49.17	0	1118212..1118811	+	199	27367428	-	VV2_1037	-	peptide methionine sulfoxide reductase domain-containing protein
965	 49.81	0	1118808..1119335	+	175	27367429	-	VV2_1038	-	peptide methionine sulfoxide reductase
966	 46.18	0	1119488..1119736	+	82	27367430	-	VV2_1039	-	hypothetical protein
967	 44.96	0	1119923..1120180	+	85	27367431	-	VV2_1040	-	hypothetical protein
968	 50.92	0	1120257..1121609	-	450	27367432	-	VV2_1041	-	ABC-type sugar transport system, periplasmic component
969	 53.42	+1	1121618..1123603	-	661	27367433	-	VV2_1042	-	methyl-accepting chemotaxis protein
970	 40.43	-2	1124145..1124849	+	234	27367434	-	VV2_1043	-	hypothetical protein
971	 48.77	0	1124916..1125401	-	161	27367435	-	VV2_1044	-	hypothetical protein
972	 47.41	0	1125446..1125715	-	89	27367436	-	VV2_1045	-	glutaredoxin
973	 48.53	0	1125830..1126678	+	282	27367437	-	VV2_1046	-	AraC-type DNA-binding domain-containing protein
974	 45.89	0	1126941..1128143	+	400	27367438	-	VV2_1047	-	transposase
975	 46.84	0	1128305..1129000	+	231	27367439	-	VV2_1048	-	hypothetical protein
976	 47.33	0	1129100..1130035	-	311	27367440	-	VV2_1049	-	transcriptional regulator
977	 49.62	0	1130136..1131449	+	437	27367441	-	VV2_1050	-	Alpha-galactosidase/6-phospho-beta-glucosidase
978	 49.33	0	1131533..1132132	-	199	27367442	-	VV2_1051	-	putative threonine efflux protein
979	 47.41	0	1132254..1132736	+	160	27367443	-	VV2_1052	-	transcriptional regulator
980	 49.26	0	1132760..1133575	-	271	27367444	-	VV2_1053	-	AraC-type DNA-binding domain-containing protein
47.71	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.