IslandPath Analysis: Vibrio vulnificus CMCP6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.71   STD DEV: 3.40
Vibrio vulnificus CMCP6 chromosome II, complete sequence - 1..1844853
1557 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
794	 52.67	+1	921936..925064	+	1042	27367258	-	VV2_0852	-	putative silver efflux pump
795	 47.05	0	925153..925728	+	191	27367259	-	VV2_0853	-	hypothetical protein
796	 49.79	0	926270..927691	+	473	27367260	tnaA	VV2_0854	-	tryptophanase
797	 48.48	0	927789..929003	+	404	27367261	-	VV2_0855	-	amino acid permease
798	 48.95	0	929040..930608	-	522	27367262	-	VV2_0856	-	ABC transporter ATPase
799	 46.15	0	931111..931695	+	194	27367263	-	VV2_0857	-	hypothetical protein
800	 49.17	0	931878..933209	-	443	27367264	-	VV2_0858	-	ferric reductase
801	 50.19	0	933309..934340	-	343	27367265	-	VV2_0859	-	transcriptional regulator
802	 48.42	0	934586..935029	+	147	27367266	-	VV2_0860	-	phosphotransferase system mannitol
803	 42.96	-1	935079..935369	+	96	27367267	-	VV2_0861	-	phosphotransferase system, galactitol-specific IIB component
804	 49.56	0	935379..936635	+	418	161501862	ulaA	VV2_0862	-	ascorbate-specific PTS system enzyme IIC
805	 48.52	0	936715..937221	-	168	27367269	def	VV2_0863	-	peptide deformylase
806	 51.07	0	937430..940057	-	875	27367270	-	VV2_0864	-	hypothetical protein
807	 50.40	0	940162..941169	-	335	27367271	-	VV2_0865	-	hypothetical protein
808	 48.84	0	941731..942981	+	416	27367272	-	VV2_0867	-	hemolysin
809	 51.80	+1	943098..943514	+	138	27367273	-	VV2_0868	-	acetyltransferase
810	 51.08	0	943595..945115	-	506	27367274	-	VV2_0869	-	NAD-dependent aldehyde dehydrogenase
811	 49.77	0	945355..947124	+	589	27367275	-	VV2_0870	-	transcriptional activator of acetoin/glycerol metabolism
812	 46.92	0	947187..949181	-	664	27367276	-	VV2_0871	-	GGDEF domain-containing protein
813	 47.86	0	949241..950197	-	318	27367277	-	VV2_0872	-	ABC-type sugar transport system, periplasmic component
814	 52.96	+1	950574..951164	-	196	27367278	-	VV2_0873	-	glutathione S-transferase
815	 51.53	+1	951337..952188	+	283	27367279	-	VV2_0874	-	transcriptional regulator
816	 50.19	0	952364..953170	+	268	27367280	-	VV2_0875	-	epimerase
817	 49.82	0	953307..954131	+	274	27367281	-	VV2_0877	-	DNA-binding HTH domain-containing protein
818	 49.57	0	954234..955502	+	422	27367282	-	VV2_0878	-	tyrosyl-tRNA synthetase
819	 51.30	+1	955561..956601	-	346	27367283	-	VV2_0879	-	dehydrogenase
820	 51.55	+1	956721..957944	-	407	27367284	-	VV2_0881	-	long-chain fatty acid ABC transporter
821	 42.11	-1	958294..959079	+	261	27367285	-	VV2_0882	-	transcriptional regulator
822	 48.74	0	959258..960289	-	343	27367286	-	VV2_0883	-	multidrug resistance efflux pump
823	 47.62	0	960293..960733	-	146	27367287	-	VV2_0884	-	Mg2+ and Co2+ transporter
824	 49.23	0	960974..962998	-	674	27367288	-	VV2_0885	-	Alkyl sulfatase
825	 47.56	0	963150..963641	-	163	27367289	-	VV2_0887	-	TPR repeat-containing protein
826	 50.28	0	963815..964711	+	298	27367290	-	VV2_0888	-	transcriptional regulator
827	 49.31	0	964732..966321	-	529	27367291	-	VV2_0889	-	membrane-associated metal-dependent hydrolase
828	 51.10	0	966436..966936	-	166	27367292	-	VV2_0890	-	cytochrome b
829	 44.33	0	966929..967210	-	93	27367293	-	VV2_0891	-	hypothetical protein
830	 42.83	-1	967335..967808	+	157	27367294	-	VV2_0892	-	diadenosine tetraphosphate hydrolase
831	 49.11	0	967819..968883	-	354	27367295	-	VV2_0893	-	arsenite efflux pump ACR3
832	 46.55	0	968916..969263	-	115	27367296	-	VV2_0894	-	transcriptional regulator
833	 49.01	0	969601..970359	+	252	27367297	-	VV2_0896	-	ABC-type amino acid transport/signal transduction system
834	 42.86	-1	970426..970929	-	167	27367298	-	VV2_0897	-	hypothetical protein
835	 53.69	+1	970978..972102	-	374	27367299	-	VV2_0898	-	acetylornithine deacetylase
836	 50.64	0	972115..972582	-	155	27367300	-	VV2_0899	-	hypothetical protein
837	 52.40	+1	972579..973328	-	249	27367301	-	VV2_0900	-	hypothetical protein
838	 49.74	0	973738..974127	+	129	27367302	-	VV2_0902	-	hypothetical protein
839	 52.18	+1	974233..976296	-	687	27367303	malS	VV2_0903	-	periplasmic alpha-amylase precursor
840	 49.52	0	976616..977239	-	207	27367304	-	VV2_0904	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
841	 50.00	0	977252..978181	-	309	27367305	-	VV2_0905	-	ribokinase family sugar kinase
842	 51.37	+1	978362..979276	+	304	27367306	-	VV2_0906	-	DMT family permease
843	 35.68	-2	979574..982258	-	894	27367307	-	VV2_0907	-	ankyrin repeat-containing protein
844	 35.18	-2	982438..983304	+	288	27367308	-	VV2_0908	-	molybdenum cofactor biosynthesis protein
845	 34.81	-2	983669..984007	+	112	27367309	-	VV2_0909	-	thymidylate kinase
846	 38.10	-2	984409..984975	-	188	27367310	-	VV2_0910	-	hypothetical protein
847	 50.16	0	985323..985958	-	211	27367311	-	VV2_0911	-	hypothetical protein
848	 43.93	-1	985999..986319	-	106	27367312	-	VV2_0912	-	hypothetical protein
849	 46.20	0	986340..986852	-	170	27367313	-	VV2_0913	-	major facilitator superfamily permease
850	 49.81	0	986868..987638	-	256	27367314	-	VV2_0914	-	2-deoxy-D-gluconate 3-dehydrogenase
851	 45.34	0	987891..988673	+	260	27367315	-	VV2_0915	-	transcriptional regulator
852	 50.38	0	988754..990619	+	621	27367316	-	VV2_0916	-	signal transduction protein
853	 48.10	0	990620..991357	+	245	27367317	-	VV2_0917	-	DNA polymerase III, epsilon subunit
854	 51.96	+1	991996..993450	+	484	27367318	-	VV2_0918	-	hypothetical protein
855	 48.74	0	993618..994013	+	131	27367319	-	VV2_0919	-	hypothetical protein
856	 46.00	0	994169..995629	+	486	27367320	-	VV2_0920	-	amidohydrolase
857	 45.42	0	995719..996330	+	203	27367321	-	VV2_0921	-	small-conductance mechanosensitive channel
858	 49.77	0	996425..998644	-	739	27367322	-	VV2_0922	-	hypothetical protein
859	 49.33	0	998785..999303	-	172	27367323	-	VV2_0924	-	histone acetyltransferase HPA2
860	 48.82	0	999348..1000961	-	537	27367324	-	VV2_0925	-	small-conductance mechanosensitive channel
861	 40.74	-2	1001482..1001751	-	89	27367325	-	VV2_0926	-	methyl-accepting chemotaxis protein
862	 49.55	0	1002099..1005236	-	1045	27367326	-	VV2_0928	-	cation/multidrug efflux pump
863	 50.73	0	1005248..1006408	-	386	27367327	-	VV2_0929	-	membrane-fusion protein
864	 47.43	0	1006808..1007332	+	174	27367328	-	VV2_0930	-	hypothetical protein
865	 47.00	0	1007341..1009491	+	716	27367329	-	VV2_0931	-	Signal transduction histidine kinase
866	 49.75	0	1009590..1009991	+	133	27367330	-	VV2_0932	-	NTP pyrophosphohydrolase
867	 49.81	0	1010180..1010719	+	179	27367331	-	VV2_0933	-	phospholipid-binding protein
868	 49.68	0	1010749..1011531	+	260	27367332	-	VV2_0934	-	AraC-type DNA-binding domain-containing protein
869	 48.03	0	1011620..1013170	+	516	27367333	-	VV2_0935	-	hypothetical protein
870	 49.79	0	1013165..1013632	-	155	27367334	-	VV2_0936	-	transcriptional regulator
871	 50.75	0	1013761..1014966	+	401	27367335	-	VV2_0937	-	major facilitator superfamily permease
872	 49.14	0	1015505..1016668	+	387	27367336	-	VV2_0939	-	ABC-type branched-chain amino acid transport system, periplasmic component
873	 48.08	0	1016665..1018488	+	607	27367337	-	VV2_0940	-	GGDEF domain-containing protein
874	 49.12	0	1018472..1018927	+	151	27367338	-	VV2_0941	-	histone acetyltransferase HPA2
875	 49.03	0	1019237..1021255	+	672	27367339	-	VV2_0942	-	elongation factor G
876	 44.44	0	1021425..1021622	-	65	27367340	-	VV2_0944	-	hypothetical protein
877	 49.89	0	1021624..1022076	-	150	27367341	-	VV2_0945	-	hypothetical protein
878	 51.49	+1	1022073..1022375	-	100	27367342	-	VV2_0946	-	DNA-binding protein
879	 45.64	0	1022514..1022708	-	64	27367343	-	VV2_0947	-	hypothetical protein
880	 49.65	0	1022920..1023906	-	328	27367344	-	VV2_0949	-	cytochrome c peroxidase
881	 47.13	0	1024187..1024534	-	115	161501861	-	VV2_0950	-	hypothetical protein
882	 49.22	0	1024664..1024984	-	106	27367346	-	VV2_0951	-	translation initiation factor 1
883	 53.14	+1	1025250..1026890	+	546	27367347	-	VV2_0952	-	hypothetical protein
884	 46.08	0	1026946..1027902	-	318	27367348	-	VV2_0953	-	transcriptional regulator
885	 44.82	0	1028164..1028877	-	237	27367349	-	VV2_0954	-	hypothetical protein
886	 51.01	0	1029076..1029420	+	114	27367350	-	VV2_0955	-	hypothetical protein
887	 51.03	0	1029452..1030231	-	259	27367351	-	VV2_0956	-	AraC-type DNA-binding domain-containing protein
888	 50.95	0	1030327..1031484	+	385	27367352	-	VV2_0957	-	major facilitator superfamily permease
889	 50.54	0	1032965..1033795	+	276	27367353	-	VV2_0958	-	DMT family permease
890	 44.94	0	1033944..1034417	+	157	27367354	-	VV2_0959	-	ATPase involved in DNA repair
891	 48.15	0	1034575..1035222	+	215	27367355	-	VV2_0960	-	hypothetical protein
892	 49.54	0	1035476..1036339	+	287	27367356	-	VV2_0961	-	DMT family permease
893	 47.18	0	1036317..1037096	-	259	27367357	-	VV2_0962	-	flavodoxin reductase family 1 protein
47.71	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.