IslandPath Analysis: Vibrio vulnificus CMCP6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.71   STD DEV: 3.40
Vibrio vulnificus CMCP6 chromosome II, complete sequence - 1..1844853
1557 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
751	 44.29	-1	862121..862768	+	215	27367214	-	VV2_0805	-	acetyltransferase/hydrolase
752	 46.70	0	863078..863653	+	191	27367215	-	VV2_0807	-	Outer membrane protein
753	 44.73	0	864213..864923	-	236	27367217	-	VV2_0809	-	Zn-dependent hydrolase
754	 48.42	0	865100..867982	-	960	27367218	-	VV2_0810	-	hypothetical protein
755	 45.63	0	868150..870117	-	655	27367219	-	VV2_0811	-	EAL domain-containing protein
756	 42.32	-1	870534..871379	-	281	27367220	-	VV2_0812	-	small-conductance mechanosensitive channel
757	 44.78	0	871591..872088	-	165	27367221	-	VV2_0813	-	phenylalanyl-tRNA synthetase beta subunit
758	 47.68	0	872343..872837	-	164	27367222	-	VV2_0814	-	hypothetical protein
759	 47.19	0	873132..873860	+	242	27367223	artP	VV2_0815	-	arginine transporter ATP-binding subunit
760	 45.63	0	873984..874715	+	243	27367224	-	VV2_0816	-	ABC-type amino acid transport/signal transduction system
761	 49.86	0	874717..875406	+	229	27367225	-	VV2_0817	-	arginine transporter permease subunit ArtQ
762	 50.82	0	875403..876071	+	222	27367226	artM	VV2_0818	-	arginine transporter permease subunit ArtM
763	 47.49	0	876279..876815	+	178	27367227	-	VV2_0819	-	hypothetical protein
764	 50.20	0	876874..880437	-	1187	27367228	-	VV2_0820	-	chitin-binding domain-containing protein
765	 45.96	0	881020..883197	-	725	27367229	-	VV2_0821	-	EAL domain-containing protein
766	 48.16	0	883545..884630	+	361	27367230	-	VV2_0822	-	hypothetical protein
767	 45.87	0	884720..885469	-	249	27367231	-	VV2_0823	-	ABC-type amino acid transport/signal transduction systems
768	 49.97	0	885925..887415	+	496	27367232	-	VV2_0825	-	methyl-accepting chemotaxis protein
769	 43.90	-1	887489..888217	+	242	27367233	-	VV2_0826	-	ABC-type amino acid transport/signal transduction system
770	 51.05	0	888306..890348	-	680	27367234	-	VV2_0827	-	phosphatase
771	 43.66	-1	890636..890974	+	112	27367235	-	VV2_0828	-	hypothetical protein
772	 51.01	0	891025..891720	-	231	27367236	-	VV2_0829	-	phosphopantetheinyl transferase component of siderophore synthetase
773	 50.70	0	891725..894793	-	1022	27367237	-	VV2_0830	-	non-ribosomal peptide synthetase modules
774	 50.45	0	894863..899425	-	1520	27367238	-	VV2_0831	-	non-ribosomal peptide synthetase modules
775	 50.14	0	899651..900721	+	356	27367239	-	VV2_0833	-	phospho-2-dehydro-3-deoxyheptonate aldolase
776	 49.05	0	900953..901741	-	262	27367240	-	VV2_0834	-	2,3-dihydroxybenzoate-2,3-dehydrogenase
777	 49.07	0	902113..903294	+	393	27367241	-	VV2_0835	-	isochorismate synthase
778	 50.18	0	903304..904941	+	545	27367242	-	VV2_0836	-	peptide arylation protein
779	 50.25	0	905060..905875	-	271	27367243	-	VV2_0837	-	siderophore-interacting protein
780	 49.66	0	905939..906826	-	295	27367244	-	VV2_0838	-	aryl carrier domain-containing protein
781	 48.18	0	906929..907258	-	109	27367245	-	VV2_0839	-	isochorismate-pyruvate lyase
782	 50.21	0	907487..909115	-	542	27367246	-	VV2_0840	-	peptide arylation protein
783	 48.56	0	909341..909583	+	80	27367247	-	VV2_0841	-	aryl carrier domain-containing protein
784	 45.38	0	909660..910547	+	295	27367248	-	VV2_0842	-	ABC-type enterochelin transport system, periplasmic component
785	 44.27	-1	910632..912689	-	685	27367249	-	VV2_0843	-	Outer membrane receptor protein
786	 46.34	0	913030..914313	-	427	27367250	-	VV2_0844	-	non-ribosomal peptide synthetase modules
787	 40.85	-2	915398..915610	+	70	27367251	-	VV2_0845	-	hypothetical protein
788	 46.91	0	915878..916783	+	301	27367252	-	VV2_0846	-	glutathione synthase
789	 45.22	0	916847..917275	+	142	27367253	-	VV2_0847	-	hypothetical protein
790	 47.25	0	917325..918107	-	260	27367254	-	VV2_0848	-	Zn-dependent hydrolase
791	 50.61	0	918345..918755	+	136	27367255	-	VV2_0849	-	hypothetical protein
792	 51.39	+1	918846..920213	+	455	27367256	-	VV2_0850	-	Outer membrane protein
793	 51.70	+1	920233..921936	+	567	27367257	-	VV2_0851	-	hypothetical protein
794	 52.67	+1	921936..925064	+	1042	27367258	-	VV2_0852	-	putative silver efflux pump
795	 47.05	0	925153..925728	+	191	27367259	-	VV2_0853	-	hypothetical protein
796	 49.79	0	926270..927691	+	473	27367260	tnaA	VV2_0854	-	tryptophanase
797	 48.48	0	927789..929003	+	404	27367261	-	VV2_0855	-	amino acid permease
798	 48.95	0	929040..930608	-	522	27367262	-	VV2_0856	-	ABC transporter ATPase
799	 46.15	0	931111..931695	+	194	27367263	-	VV2_0857	-	hypothetical protein
800	 49.17	0	931878..933209	-	443	27367264	-	VV2_0858	-	ferric reductase
801	 50.19	0	933309..934340	-	343	27367265	-	VV2_0859	-	transcriptional regulator
802	 48.42	0	934586..935029	+	147	27367266	-	VV2_0860	-	phosphotransferase system mannitol
803	 42.96	-1	935079..935369	+	96	27367267	-	VV2_0861	-	phosphotransferase system, galactitol-specific IIB component
804	 49.56	0	935379..936635	+	418	161501862	ulaA	VV2_0862	-	ascorbate-specific PTS system enzyme IIC
805	 48.52	0	936715..937221	-	168	27367269	def	VV2_0863	-	peptide deformylase
806	 51.07	0	937430..940057	-	875	27367270	-	VV2_0864	-	hypothetical protein
807	 50.40	0	940162..941169	-	335	27367271	-	VV2_0865	-	hypothetical protein
808	 48.84	0	941731..942981	+	416	27367272	-	VV2_0867	-	hemolysin
809	 51.80	+1	943098..943514	+	138	27367273	-	VV2_0868	-	acetyltransferase
810	 51.08	0	943595..945115	-	506	27367274	-	VV2_0869	-	NAD-dependent aldehyde dehydrogenase
811	 49.77	0	945355..947124	+	589	27367275	-	VV2_0870	-	transcriptional activator of acetoin/glycerol metabolism
812	 46.92	0	947187..949181	-	664	27367276	-	VV2_0871	-	GGDEF domain-containing protein
813	 47.86	0	949241..950197	-	318	27367277	-	VV2_0872	-	ABC-type sugar transport system, periplasmic component
814	 52.96	+1	950574..951164	-	196	27367278	-	VV2_0873	-	glutathione S-transferase
815	 51.53	+1	951337..952188	+	283	27367279	-	VV2_0874	-	transcriptional regulator
816	 50.19	0	952364..953170	+	268	27367280	-	VV2_0875	-	epimerase
817	 49.82	0	953307..954131	+	274	27367281	-	VV2_0877	-	DNA-binding HTH domain-containing protein
818	 49.57	0	954234..955502	+	422	27367282	-	VV2_0878	-	tyrosyl-tRNA synthetase
819	 51.30	+1	955561..956601	-	346	27367283	-	VV2_0879	-	dehydrogenase
820	 51.55	+1	956721..957944	-	407	27367284	-	VV2_0881	-	long-chain fatty acid ABC transporter
821	 42.11	-1	958294..959079	+	261	27367285	-	VV2_0882	-	transcriptional regulator
822	 48.74	0	959258..960289	-	343	27367286	-	VV2_0883	-	multidrug resistance efflux pump
823	 47.62	0	960293..960733	-	146	27367287	-	VV2_0884	-	Mg2+ and Co2+ transporter
824	 49.23	0	960974..962998	-	674	27367288	-	VV2_0885	-	Alkyl sulfatase
825	 47.56	0	963150..963641	-	163	27367289	-	VV2_0887	-	TPR repeat-containing protein
826	 50.28	0	963815..964711	+	298	27367290	-	VV2_0888	-	transcriptional regulator
827	 49.31	0	964732..966321	-	529	27367291	-	VV2_0889	-	membrane-associated metal-dependent hydrolase
828	 51.10	0	966436..966936	-	166	27367292	-	VV2_0890	-	cytochrome b
829	 44.33	0	966929..967210	-	93	27367293	-	VV2_0891	-	hypothetical protein
830	 42.83	-1	967335..967808	+	157	27367294	-	VV2_0892	-	diadenosine tetraphosphate hydrolase
831	 49.11	0	967819..968883	-	354	27367295	-	VV2_0893	-	arsenite efflux pump ACR3
832	 46.55	0	968916..969263	-	115	27367296	-	VV2_0894	-	transcriptional regulator
833	 49.01	0	969601..970359	+	252	27367297	-	VV2_0896	-	ABC-type amino acid transport/signal transduction system
834	 42.86	-1	970426..970929	-	167	27367298	-	VV2_0897	-	hypothetical protein
835	 53.69	+1	970978..972102	-	374	27367299	-	VV2_0898	-	acetylornithine deacetylase
836	 50.64	0	972115..972582	-	155	27367300	-	VV2_0899	-	hypothetical protein
837	 52.40	+1	972579..973328	-	249	27367301	-	VV2_0900	-	hypothetical protein
838	 49.74	0	973738..974127	+	129	27367302	-	VV2_0902	-	hypothetical protein
839	 52.18	+1	974233..976296	-	687	27367303	malS	VV2_0903	-	periplasmic alpha-amylase precursor
840	 49.52	0	976616..977239	-	207	27367304	-	VV2_0904	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
841	 50.00	0	977252..978181	-	309	27367305	-	VV2_0905	-	ribokinase family sugar kinase
842	 51.37	+1	978362..979276	+	304	27367306	-	VV2_0906	-	DMT family permease
843	 35.68	-2	979574..982258	-	894	27367307	-	VV2_0907	-	ankyrin repeat-containing protein
844	 35.18	-2	982438..983304	+	288	27367308	-	VV2_0908	-	molybdenum cofactor biosynthesis protein
845	 34.81	-2	983669..984007	+	112	27367309	-	VV2_0909	-	thymidylate kinase
846	 38.10	-2	984409..984975	-	188	27367310	-	VV2_0910	-	hypothetical protein
847	 50.16	0	985323..985958	-	211	27367311	-	VV2_0911	-	hypothetical protein
848	 43.93	-1	985999..986319	-	106	27367312	-	VV2_0912	-	hypothetical protein
849	 46.20	0	986340..986852	-	170	27367313	-	VV2_0913	-	major facilitator superfamily permease
850	 49.81	0	986868..987638	-	256	27367314	-	VV2_0914	-	2-deoxy-D-gluconate 3-dehydrogenase
47.71	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.