IslandPath Analysis: Vibrio vulnificus CMCP6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.71   STD DEV: 3.40
Vibrio vulnificus CMCP6 chromosome II, complete sequence - 1..1844853
1557 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
681	 48.05	0	781766..782560	-	264	27367144	-	VV2_0729	-	transcriptional regulator
682	 49.11	0	782710..783609	-	299	27367145	-	VV2_0730	-	dihydrodipicolinate synthase/N-acetylneuraminate lyase
683	 47.98	0	783644..784927	-	427	27367146	-	VV2_0731	-	TRAP-type C4-dicarboxylate transport system, large permease component
684	 43.98	-1	784937..785443	-	168	27367147	-	VV2_0732	-	TRAP-type C4-dicarboxylate transport system, small permease component
685	 48.92	0	785506..786384	-	292	27367148	-	VV2_0733	-	TRAP-type C4-dicarboxylate transport system, periplasmic component
686	 50.15	0	786745..787422	+	225	27367149	-	VV2_0734	-	N-acetylmannosamine-6-phosphate 2-epimerase
687	 49.09	0	787403..788284	+	293	27367150	-	VV2_0735	-	N-acetylmannosamine kinase
688	 50.22	0	788281..789417	+	378	27367151	-	VV2_0736	-	N-acetylglucosamine-6-phosphate deacetylase
689	 46.03	0	789560..791095	-	511	27367152	-	VV2_0738	-	ABC-type uncharacterized transport system, periplasmic component
690	 45.80	0	791667..793439	-	590	27367153	-	VV2_0739	-	Poly(3-hydroxyalkanoate) synthetase
691	 40.23	-2	793501..793848	-	115	27367154	-	VV2_0740	-	hypothetical protein
692	 48.30	0	793889..795097	-	402	27367155	-	VV2_0741	-	acetyl-CoA acetyltransferase
693	 48.75	0	795110..795667	-	185	27367156	-	VV2_0742	-	acetoacetyl-CoA reductase
694	 46.74	0	796449..797306	-	285	27367157	-	VV2_0743	-	preprotein translocase subunit SecF
695	 49.15	0	797309..797776	-	155	27367158	-	VV2_0744	-	preprotein translocase subunit SecD
696	 47.33	0	797767..799152	-	461	27367159	-	VV2_0745	-	preprotein translocase subunit SecD
697	 46.96	0	799222..799698	-	158	27367160	-	VV2_0746	-	hypothetical protein
698	 44.55	0	799834..800493	-	219	27367161	-	VV2_0747	-	SH3 domain-containing protein
699	 45.39	0	800649..801212	+	187	27367162	-	VV2_0748	-	hypothetical protein
700	 44.59	0	801726..802187	-	153	27367163	-	VV2_0749	-	transcriptional regulator
701	 47.90	0	802335..803309	+	324	27367164	-	VV2_0750	-	DMT family permease
702	 46.06	0	803451..804110	+	219	27367165	-	VV2_0751	-	hypothetical protein
703	 44.37	0	804107..806680	-	857	27367166	-	VV2_0752	-	Signal transduction histidine kinase
704	 44.87	0	806677..807777	-	366	27367167	-	VV2_0753	-	ABC-type sugar transport system, periplasmic component
705	 46.38	0	807964..809067	-	367	27367168	-	VV2_0754	-	hypothetical protein
706	 43.23	-1	809217..809408	-	63	27367169	-	VV2_0755	-	endonuclease
707	 45.40	0	809513..810175	-	220	27367170	-	VV2_0756	-	hypothetical protein
708	 43.33	-1	810241..810450	-	69	27367171	-	VV2_0757	-	hypothetical protein
709	 42.54	-1	810720..811034	+	104	27367172	-	VV2_0759	-	hypothetical protein
710	 48.72	0	811248..812534	+	428	27367173	-	VV2_0760	-	Na+-driven multidrug efflux pump
711	 43.75	-1	812586..815033	-	815	27367174	-	VV2_0761	-	FOG: CheY-like receiver
712	 43.11	-1	815350..815799	+	149	27367175	-	VV2_0762	-	hypothetical protein
713	 45.96	0	815800..816852	+	350	27367176	-	VV2_0763	-	hypothetical protein
714	 48.02	0	817187..818623	+	478	27367177	-	VV2_0764	-	glyceraldehyde-3-phosphate dehydrogenase
715	 48.68	0	818958..819185	+	75	27367178	-	VV2_0766	-	hypothetical protein
716	 47.23	0	819182..820066	-	294	27367179	-	VV2_0767	-	transcriptional regulator
717	 50.99	0	820159..821415	+	418	27367180	-	VV2_0768	-	adenylosuccinate synthase
718	 49.16	0	821613..822086	+	157	27367181	-	VV2_0770	-	peroxiredoxin
719	 50.18	0	822172..822735	-	187	27367182	-	VV2_0771	-	putative threonine efflux protein
720	 49.58	0	822844..823785	-	313	27367183	-	VV2_0772	-	transcriptional regulator
721	 48.22	0	823788..824237	-	149	27367184	-	VV2_0773	-	transcriptional regulator
722	 50.24	0	824493..825746	+	417	27367185	-	VV2_0774	-	inner membrane protein YjeH
723	 50.00	0	825760..826521	-	253	27367186	-	VV2_0775	-	glutamine amidotransferase
724	 52.26	+1	826534..827991	-	485	27367187	-	VV2_0776	-	transcriptional regulator
725	 49.40	0	828108..828773	+	221	27367188	-	VV2_0777	-	flavin-nucleotide-binding protein
726	 48.11	0	828865..830265	-	466	27367189	-	VV2_0778	-	Signal transduction histidine kinase
727	 45.73	0	830265..830966	-	233	27367190	-	VV2_0779	-	response regulator
728	 46.45	0	831249..831431	-	60	27367191	-	VV2_0780	-	hypothetical protein
729	 48.10	0	831430..832059	+	209	27367192	-	VV2_0781	-	hypothetical protein
730	 47.76	0	832112..833137	-	341	27367193	-	VV2_0782	-	AraC-type DNA-binding domain-containing protein
731	 50.30	0	833233..833568	+	111	27367194	-	VV2_0783	-	major facilitator superfamily permease
732	 49.10	0	833565..834788	+	407	27367195	-	VV2_0784	-	multidrug resistance efflux pump
733	 48.33	0	834930..836276	+	448	27367196	-	VV2_0785	-	Mg/Co/Ni transporter MgtE
734	 48.50	0	836844..837746	+	300	27367197	-	VV2_0787	-	DNA gyrase inhibitor
735	 50.77	0	838035..839273	+	412	27367198	codB	VV2_0788	-	cytosine permease
736	 50.70	0	839283..840560	+	425	27367199	-	VV2_0789	-	cytosine deaminase
737	 46.40	0	840883..841104	-	73	27367200	-	VV2_0791	-	ATP-dependent protease
738	 47.46	0	841101..843245	-	714	27367201	-	VV2_0792	-	ATP-dependent protease
739	 47.50	0	843535..844014	+	159	27367202	-	VV2_0793	-	hypothetical protein
740	 47.76	0	844029..845657	+	542	27367203	-	VV2_0794	-	ABC-type uncharacterized transport system, duplicated ATPase component
741	 49.53	0	845840..847876	-	678	27367204	-	VV2_0795	-	S9A serine protease
742	 46.89	0	848111..849010	-	299	27367205	-	VV2_0796	-	transcriptional regulator
743	 51.45	+1	849223..850917	+	564	27367206	-	VV2_0797	-	L-lactate permease
744	 48.81	0	851065..851820	+	251	27367207	-	VV2_0798	-	Fe-S oxidoreductase
745	 49.69	0	851820..853250	+	476	27367208	-	VV2_0799	-	hypothetical protein
746	 48.64	0	853247..853906	+	219	27367209	-	VV2_0800	-	hypothetical protein
747	 49.98	0	854076..856916	+	946	27367210	-	VV2_0801	-	Fe-S oxidoreductase
748	 45.77	0	857042..857797	+	251	27367211	-	VV2_0802	-	transcriptional regulator
749	 47.46	0	857923..859989	+	688	27367212	-	VV2_0803	-	von Willebrand factor type A (vWA) domain-containing protein
750	 48.00	0	860215..862041	+	608	27367213	-	VV2_0804	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
751	 44.29	-1	862121..862768	+	215	27367214	-	VV2_0805	-	acetyltransferase/hydrolase
752	 46.70	0	863078..863653	+	191	27367215	-	VV2_0807	-	Outer membrane protein
753	 44.73	0	864213..864923	-	236	27367217	-	VV2_0809	-	Zn-dependent hydrolase
754	 48.42	0	865100..867982	-	960	27367218	-	VV2_0810	-	hypothetical protein
755	 45.63	0	868150..870117	-	655	27367219	-	VV2_0811	-	EAL domain-containing protein
756	 42.32	-1	870534..871379	-	281	27367220	-	VV2_0812	-	small-conductance mechanosensitive channel
757	 44.78	0	871591..872088	-	165	27367221	-	VV2_0813	-	phenylalanyl-tRNA synthetase beta subunit
758	 47.68	0	872343..872837	-	164	27367222	-	VV2_0814	-	hypothetical protein
759	 47.19	0	873132..873860	+	242	27367223	artP	VV2_0815	-	arginine transporter ATP-binding subunit
760	 45.63	0	873984..874715	+	243	27367224	-	VV2_0816	-	ABC-type amino acid transport/signal transduction system
761	 49.86	0	874717..875406	+	229	27367225	-	VV2_0817	-	arginine transporter permease subunit ArtQ
762	 50.82	0	875403..876071	+	222	27367226	artM	VV2_0818	-	arginine transporter permease subunit ArtM
763	 47.49	0	876279..876815	+	178	27367227	-	VV2_0819	-	hypothetical protein
764	 50.20	0	876874..880437	-	1187	27367228	-	VV2_0820	-	chitin-binding domain-containing protein
765	 45.96	0	881020..883197	-	725	27367229	-	VV2_0821	-	EAL domain-containing protein
766	 48.16	0	883545..884630	+	361	27367230	-	VV2_0822	-	hypothetical protein
767	 45.87	0	884720..885469	-	249	27367231	-	VV2_0823	-	ABC-type amino acid transport/signal transduction systems
768	 49.97	0	885925..887415	+	496	27367232	-	VV2_0825	-	methyl-accepting chemotaxis protein
769	 43.90	-1	887489..888217	+	242	27367233	-	VV2_0826	-	ABC-type amino acid transport/signal transduction system
770	 51.05	0	888306..890348	-	680	27367234	-	VV2_0827	-	phosphatase
771	 43.66	-1	890636..890974	+	112	27367235	-	VV2_0828	-	hypothetical protein
772	 51.01	0	891025..891720	-	231	27367236	-	VV2_0829	-	phosphopantetheinyl transferase component of siderophore synthetase
773	 50.70	0	891725..894793	-	1022	27367237	-	VV2_0830	-	non-ribosomal peptide synthetase modules
774	 50.45	0	894863..899425	-	1520	27367238	-	VV2_0831	-	non-ribosomal peptide synthetase modules
775	 50.14	0	899651..900721	+	356	27367239	-	VV2_0833	-	phospho-2-dehydro-3-deoxyheptonate aldolase
776	 49.05	0	900953..901741	-	262	27367240	-	VV2_0834	-	2,3-dihydroxybenzoate-2,3-dehydrogenase
777	 49.07	0	902113..903294	+	393	27367241	-	VV2_0835	-	isochorismate synthase
778	 50.18	0	903304..904941	+	545	27367242	-	VV2_0836	-	peptide arylation protein
779	 50.25	0	905060..905875	-	271	27367243	-	VV2_0837	-	siderophore-interacting protein
780	 49.66	0	905939..906826	-	295	27367244	-	VV2_0838	-	aryl carrier domain-containing protein
47.71	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.