IslandPath Analysis: Vibrio vulnificus CMCP6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.71   STD DEV: 3.40
Vibrio vulnificus CMCP6 chromosome II, complete sequence - 1..1844853
1557 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
598	 48.18	0	684823..686304	+	493	27367061	-	VV2_0635	-	ATPase involved in DNA repair
599	 47.97	0	686335..686703	+	122	27367062	-	VV2_0636	-	hypothetical protein
600	 47.55	0	686706..687887	+	393	27367063	-	VV2_0637	-	hypothetical protein
601	 49.08	0	687920..689005	+	361	27367064	-	VV2_0638	-	Type IV secretory pathway, VirB4 component
602	 50.72	0	689002..689346	+	114	27367065	-	VV2_0639	-	hypothetical protein
603	 49.63	0	689343..690023	+	226	27367066	-	VV2_0640	-	hypothetical protein
604	 48.30	0	690146..691027	+	293	27367067	-	VV2_0641	-	hypothetical protein
605	 38.80	-2	691432..691614	+	60	27367068	-	VV2_0642	-	hypothetical protein
606	 47.08	0	691667..691906	+	79	27367069	-	VV2_0643	-	hypothetical protein
607	 47.64	0	691925..692623	+	232	27367070	-	VV2_0644	-	hypothetical protein
608	 48.28	0	692620..694365	+	581	27367071	-	VV2_0645	-	conjugal transfer mating pair stabilization protein TraN
609	 47.03	0	694355..695179	+	274	27367072	-	VV2_0646	-	hypothetical protein
610	 46.14	0	695201..695614	+	137	27367073	-	VV2_0647	-	Thiol-disulfide isomerase
611	 48.38	0	695898..697259	+	453	27367074	-	VV2_0648	-	hypothetical protein
612	 49.36	0	697263..700070	+	935	27367075	-	VV2_0649	-	methyl-accepting chemotaxis protein
613	 44.79	0	700921..701793	-	290	27367076	-	VV2_0650	-	hypothetical protein
614	 42.59	-1	702004..703191	-	395	27367077	-	VV2_0651	-	major facilitator superfamily permease
615	 40.35	-2	703192..703761	-	189	27367078	-	VV2_0652	-	GTPase
616	 50.54	0	704474..704659	+	61	27367079	-	VV2_0654	-	transposase
617	 45.66	0	704987..705481	+	164	27367080	-	VV2_0655	-	integrase
618	 46.13	0	705838..706548	-	236	27367081	-	VV2_0656	-	hypothetical protein
619	 44.31	0	706561..707826	-	421	27367082	-	VV2_0657	-	hypothetical protein
620	 41.02	-1	708416..712228	+	1270	27367083	-	VV2_0658	-	hypothetical protein
621	 45.85	0	712464..714557	+	697	27367084	-	VV2_0659	-	Type IV secretory pathway, VirD4 component
622	 47.67	0	714796..715074	+	92	27367085	-	VV2_0660	-	hypothetical protein
623	 47.86	0	715165..715515	+	116	27367086	-	VV2_0661	-	endonuclease I
624	 42.42	-1	715669..715866	+	65	27367087	-	VV2_0662	-	hypothetical protein
625	 44.88	0	715970..721756	+	1928	27367088	-	VV2_0663	-	ATP-dependent exoDNAse, alpha subunit
626	 41.94	-1	721775..722146	-	123	27367089	-	VV2_0664	-	cysteinyl-tRNA synthetase
627	 37.43	-2	723614..723979	-	121	27367090	-	VV2_0665	-	hypothetical protein
628	 45.67	0	723983..724363	-	126	27367091	-	VV2_0666	-	hypothetical protein
629	 41.67	-1	725319..725558	+	79	27367092	-	VV2_0667	-	integrase
630	 43.71	-1	726039..727223	+	394	27367093	-	VV2_0669	-	hypothetical protein
631	 43.22	-1	727964..728752	+	262	27367094	-	VV2_0670	-	membrane protease subunit
632	 41.82	-1	728749..729738	+	329	27367095	-	VV2_0671	-	membrane protease subunit
633	 44.64	0	729735..731078	+	447	27367096	-	VV2_0672	-	Na+/H+ antiporter
634	 42.75	-1	731161..731436	-	91	27367097	-	VV2_0673	-	hypothetical protein
635	 44.86	0	731949..732833	-	294	27367098	-	VV2_0675	-	amino acid racemase
636	 43.46	-1	733028..734005	-	325	27367099	-	VV2_0676	-	hypothetical protein
637	 44.65	0	734483..734641	-	52	27367100	-	VV2_0678	-	ribosomal protein S2
638	 41.32	-1	735433..736671	+	412	27367101	-	VV2_0680	-	major facilitator superfamily permease
639	 39.86	-2	736672..737697	+	341	27367102	-	VV2_0681	-	hypothetical protein
640	 45.36	0	737993..738175	-	60	27367103	-	VV2_0682	-	transposase
641	 42.63	-1	738895..739884	-	329	27367104	-	VV2_0683	-	transcriptional regulator
642	 47.59	0	740094..740675	+	193	27367105	-	VV2_0684	-	esterase of the alpha/beta hydrolase fold
643	 45.43	0	740839..741855	+	338	27367106	-	VV2_0685	-	ABC-type sulfate transport system, periplasmic component
644	 47.94	0	741856..742704	+	282	27367107	-	VV2_0686	-	ABC-type sulfate transport system, permease component
645	 46.92	0	742701..743576	+	291	27367108	-	VV2_0687	-	ABC-type sulfate transport system, permease component
646	 49.23	0	743598..744635	+	345	27367109	-	VV2_0688	-	ABC-type sulfate/molybdate transport system, ATPase component
647	 51.94	+1	744750..744878	+	42	27367110	-	VV2_0689	-	transcriptional regulator
648	 48.15	0	745158..745373	+	71	27367111	-	VV2_0691	-	hypothetical protein
649	 39.62	-2	745859..746653	+	264	27367112	-	VV2_0692	-	Sir2 family NAD-dependent protein deacetylase
650	 44.44	0	747120..747272	-	50	27367113	-	VV2_0693	-	transposase
651	 43.74	-1	747727..748773	+	348	27367114	-	VV2_0694	-	permease
652	 46.26	0	748979..749272	+	97	27367115	-	VV2_0695	-	transposase
653	 46.15	0	749432..749860	+	142	27367116	-	VV2_0697	-	hypothetical protein
654	 43.54	-1	750510..752174	+	554	27367117	-	VV2_0698	-	D-glutamate deacylase
655	 42.81	-1	752237..753217	+	326	27367118	-	VV2_0699	-	putative GTPase
656	 43.11	-1	753362..754363	+	333	27367119	-	VV2_0700	-	Beta-lactamase class A
657	 49.64	0	754404..755912	+	502	27367120	-	VV2_0701	-	Beta-lactamase class C
658	 45.15	0	756355..757860	-	501	27367121	-	VV2_0702	-	phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase
659	 43.25	-1	757921..758928	-	335	27367122	-	VV2_0703	-	major facilitator superfamily permease
660	 46.35	0	759130..760212	-	360	27367123	-	VV2_0704	-	multidrug resistance efflux pump
661	 47.50	0	760803..761981	-	392	27367124	-	VV2_0706	-	hypothetical protein
662	 43.94	-1	762283..762546	-	87	27367125	-	VV2_0707	-	hypothetical protein
663	 44.57	0	762570..763085	-	171	27367126	-	VV2_0708	-	hypothetical protein
664	 42.94	-1	763198..763374	-	58	27367127	-	VV2_0709	-	hypothetical protein
665	 42.69	-1	763503..764111	+	202	27367128	-	VV2_0710	-	transcriptional regulator
666	 46.80	0	764863..765894	+	343	27367129	-	VV2_0711	-	integrase
667	 50.53	0	766014..767060	-	348	27367130	-	VV2_0712	-	guanosine 5'-monophosphate oxidoreductase
668	 48.19	0	767563..768114	+	183	27367131	-	VV2_0713	-	Outer membrane receptor protein
669	 53.43	+1	768309..769796	-	495	27367132	-	VV2_0714	-	sugar kinase
670	 49.43	0	769908..770348	-	146	27367133	-	VV2_0715	-	PAS/PAC domain-containing protein
671	 47.06	0	770348..771352	-	334	27367134	-	VV2_0716	-	response regulator
672	 42.68	-1	771635..771880	-	81	27367135	-	VV2_0717	-	hypothetical protein
673	 47.80	0	772026..772640	-	204	27367136	-	VV2_0718	-	response regulator
674	 46.82	0	772655..774322	-	555	27367137	-	VV2_0719	-	nitrate/nitrite sensor protein NarQ
675	 45.42	0	775124..775429	+	101	27367138	-	VV2_0720	-	hypothetical protein
676	 49.08	0	775426..777915	+	829	27367139	-	VV2_0721	-	nitrate reductase
677	 46.84	0	778008..778466	+	152	27367140	-	VV2_0722	-	nitrate reductase cytochrome c-type subunit
678	 47.40	0	778497..779072	+	191	27367141	-	VV2_0723	-	nitrate/TMAO reductase, membrane-bound tetraheme cytochrome c subunit
679	 48.73	0	780427..781017	-	196	27367142	-	VV2_0726	-	hypothetical protein
680	 45.83	0	781005..781580	-	191	27367143	-	VV2_0727	-	hypothetical protein
681	 48.05	0	781766..782560	-	264	27367144	-	VV2_0729	-	transcriptional regulator
682	 49.11	0	782710..783609	-	299	27367145	-	VV2_0730	-	dihydrodipicolinate synthase/N-acetylneuraminate lyase
683	 47.98	0	783644..784927	-	427	27367146	-	VV2_0731	-	TRAP-type C4-dicarboxylate transport system, large permease component
684	 43.98	-1	784937..785443	-	168	27367147	-	VV2_0732	-	TRAP-type C4-dicarboxylate transport system, small permease component
685	 48.92	0	785506..786384	-	292	27367148	-	VV2_0733	-	TRAP-type C4-dicarboxylate transport system, periplasmic component
686	 50.15	0	786745..787422	+	225	27367149	-	VV2_0734	-	N-acetylmannosamine-6-phosphate 2-epimerase
687	 49.09	0	787403..788284	+	293	27367150	-	VV2_0735	-	N-acetylmannosamine kinase
688	 50.22	0	788281..789417	+	378	27367151	-	VV2_0736	-	N-acetylglucosamine-6-phosphate deacetylase
689	 46.03	0	789560..791095	-	511	27367152	-	VV2_0738	-	ABC-type uncharacterized transport system, periplasmic component
690	 45.80	0	791667..793439	-	590	27367153	-	VV2_0739	-	Poly(3-hydroxyalkanoate) synthetase
691	 40.23	-2	793501..793848	-	115	27367154	-	VV2_0740	-	hypothetical protein
692	 48.30	0	793889..795097	-	402	27367155	-	VV2_0741	-	acetyl-CoA acetyltransferase
693	 48.75	0	795110..795667	-	185	27367156	-	VV2_0742	-	acetoacetyl-CoA reductase
694	 46.74	0	796449..797306	-	285	27367157	-	VV2_0743	-	preprotein translocase subunit SecF
695	 49.15	0	797309..797776	-	155	27367158	-	VV2_0744	-	preprotein translocase subunit SecD
696	 47.33	0	797767..799152	-	461	27367159	-	VV2_0745	-	preprotein translocase subunit SecD
697	 46.96	0	799222..799698	-	158	27367160	-	VV2_0746	-	hypothetical protein
47.71	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.