IslandPath Analysis: Vibrio vulnificus CMCP6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.71   STD DEV: 3.40
Vibrio vulnificus CMCP6 chromosome II, complete sequence - 1..1844853
1557 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
564	 51.02	0	655262..656188	+	308	27367027	-	VV2_0598	-	ABC-type multidrug transport system, ATPase component
565	 50.18	0	656185..657282	+	365	27367028	-	VV2_0599	-	ABC-type multidrug transport system, permease component
566	 50.32	0	657363..658304	+	313	27367029	-	VV2_0600	-	dehydrogenase
567	 47.62	0	658385..659014	-	209	27367030	-	VV2_0601	-	transcriptional regulator
568	 47.77	0	659153..660226	+	357	27367031	-	VV2_0602	-	Zn-dependent hydrolase
569	 50.55	0	661526..662350	+	274	27367032	-	VV2_0603	-	Co/Zn/Cd efflux system component
570	 47.96	0	662350..662766	+	138	27367033	-	VV2_0605	-	transcriptional regulator
571	 49.29	0	662754..663173	-	139	27367034	-	VV2_0606	-	lactoylglutathione lyase
572	 48.84	0	663203..663634	-	143	27367035	-	VV2_0607	-	hypothetical protein
573	 50.72	0	663874..665403	+	509	27367036	-	VV2_0608	-	superfamily II DNA/RNA helicase
574	 48.53	0	665468..665875	-	135	27367037	-	VV2_0609	-	ribosome recycling factor
575	 46.47	0	665912..666535	-	207	27367038	-	VV2_0610	-	acetyltransferase
576	 44.90	0	666546..666908	-	120	27367039	-	VV2_0611	-	hypothetical protein
577	 48.32	0	667098..667604	+	168	27367040	-	VV2_0612	-	acetyltransferase
578	 47.71	0	667833..669161	+	442	27367041	-	VV2_0613	-	hypothetical protein
579	 47.76	0	669158..670141	+	327	27367042	-	VV2_0614	-	chromosome segregation ATPase
580	 47.69	0	670203..670634	-	143	27367043	-	VV2_0615	-	histone acetyltransferase HPA2
581	 48.28	0	671039..671446	+	135	27367044	-	VV2_0616	-	nucleoside diphosphate kinase regulator
582	 51.53	+1	671710..672231	+	173	27367045	-	VV2_0617	-	SpoU class rRNA methylase
583	 40.00	-2	672373..672657	-	94	27367046	-	VV2_0618	-	transposase
584	 46.81	0	673033..673596	+	187	27367047	-	VV2_0619	-	transposase
585	 46.05	0	673742..673969	-	75	27367048	-	VV2_0620	-	hypothetical protein
586	 44.32	0	674683..675228	+	181	27367049	-	VV2_0622	-	hypothetical protein
587	 47.58	0	675258..677117	-	619	27367050	-	VV2_0623	-	ATPase involved in DNA repair
588	 48.35	0	677128..677946	-	272	27367051	-	VV2_0624	-	ATPase involved in DNA repair
589	 49.63	0	678055..678459	-	134	27367052	-	VV2_0625	-	hypothetical protein
590	 52.11	+1	678476..679636	-	386	27367053	-	VV2_0626	-	methyl-accepting chemotaxis protein
591	 49.35	0	679677..680669	-	330	27367054	-	VV2_0627	-	hypothetical protein
592	 52.67	+1	681143..681385	-	80	27367055	-	VV2_0629	-	IMP dehydrogenase/GMP reductase
593	 44.97	0	682432..682809	+	125	27367056	-	VV2_0630	-	hypothetical protein
594	 50.17	0	682894..683190	+	98	27367057	-	VV2_0631	-	hypothetical protein
595	 45.87	0	683208..683510	+	100	27367058	-	VV2_0632	-	hypothetical protein
596	 45.96	0	683524..684093	+	189	27367059	-	VV2_0633	-	hypothetical protein
597	 49.87	0	684090..684833	+	247	27367060	-	VV2_0634	-	hypothetical protein
598	 48.18	0	684823..686304	+	493	27367061	-	VV2_0635	-	ATPase involved in DNA repair
599	 47.97	0	686335..686703	+	122	27367062	-	VV2_0636	-	hypothetical protein
600	 47.55	0	686706..687887	+	393	27367063	-	VV2_0637	-	hypothetical protein
601	 49.08	0	687920..689005	+	361	27367064	-	VV2_0638	-	Type IV secretory pathway, VirB4 component
602	 50.72	0	689002..689346	+	114	27367065	-	VV2_0639	-	hypothetical protein
603	 49.63	0	689343..690023	+	226	27367066	-	VV2_0640	-	hypothetical protein
604	 48.30	0	690146..691027	+	293	27367067	-	VV2_0641	-	hypothetical protein
605	 38.80	-2	691432..691614	+	60	27367068	-	VV2_0642	-	hypothetical protein
606	 47.08	0	691667..691906	+	79	27367069	-	VV2_0643	-	hypothetical protein
607	 47.64	0	691925..692623	+	232	27367070	-	VV2_0644	-	hypothetical protein
608	 48.28	0	692620..694365	+	581	27367071	-	VV2_0645	-	conjugal transfer mating pair stabilization protein TraN
609	 47.03	0	694355..695179	+	274	27367072	-	VV2_0646	-	hypothetical protein
610	 46.14	0	695201..695614	+	137	27367073	-	VV2_0647	-	Thiol-disulfide isomerase
611	 48.38	0	695898..697259	+	453	27367074	-	VV2_0648	-	hypothetical protein
612	 49.36	0	697263..700070	+	935	27367075	-	VV2_0649	-	methyl-accepting chemotaxis protein
613	 44.79	0	700921..701793	-	290	27367076	-	VV2_0650	-	hypothetical protein
614	 42.59	-1	702004..703191	-	395	27367077	-	VV2_0651	-	major facilitator superfamily permease
615	 40.35	-2	703192..703761	-	189	27367078	-	VV2_0652	-	GTPase
616	 50.54	0	704474..704659	+	61	27367079	-	VV2_0654	-	transposase
617	 45.66	0	704987..705481	+	164	27367080	-	VV2_0655	-	integrase
618	 46.13	0	705838..706548	-	236	27367081	-	VV2_0656	-	hypothetical protein
619	 44.31	0	706561..707826	-	421	27367082	-	VV2_0657	-	hypothetical protein
620	 41.02	-1	708416..712228	+	1270	27367083	-	VV2_0658	-	hypothetical protein
621	 45.85	0	712464..714557	+	697	27367084	-	VV2_0659	-	Type IV secretory pathway, VirD4 component
622	 47.67	0	714796..715074	+	92	27367085	-	VV2_0660	-	hypothetical protein
623	 47.86	0	715165..715515	+	116	27367086	-	VV2_0661	-	endonuclease I
624	 42.42	-1	715669..715866	+	65	27367087	-	VV2_0662	-	hypothetical protein
625	 44.88	0	715970..721756	+	1928	27367088	-	VV2_0663	-	ATP-dependent exoDNAse, alpha subunit
626	 41.94	-1	721775..722146	-	123	27367089	-	VV2_0664	-	cysteinyl-tRNA synthetase
627	 37.43	-2	723614..723979	-	121	27367090	-	VV2_0665	-	hypothetical protein
628	 45.67	0	723983..724363	-	126	27367091	-	VV2_0666	-	hypothetical protein
629	 41.67	-1	725319..725558	+	79	27367092	-	VV2_0667	-	integrase
630	 43.71	-1	726039..727223	+	394	27367093	-	VV2_0669	-	hypothetical protein
631	 43.22	-1	727964..728752	+	262	27367094	-	VV2_0670	-	membrane protease subunit
632	 41.82	-1	728749..729738	+	329	27367095	-	VV2_0671	-	membrane protease subunit
633	 44.64	0	729735..731078	+	447	27367096	-	VV2_0672	-	Na+/H+ antiporter
634	 42.75	-1	731161..731436	-	91	27367097	-	VV2_0673	-	hypothetical protein
635	 44.86	0	731949..732833	-	294	27367098	-	VV2_0675	-	amino acid racemase
636	 43.46	-1	733028..734005	-	325	27367099	-	VV2_0676	-	hypothetical protein
637	 44.65	0	734483..734641	-	52	27367100	-	VV2_0678	-	ribosomal protein S2
638	 41.32	-1	735433..736671	+	412	27367101	-	VV2_0680	-	major facilitator superfamily permease
639	 39.86	-2	736672..737697	+	341	27367102	-	VV2_0681	-	hypothetical protein
640	 45.36	0	737993..738175	-	60	27367103	-	VV2_0682	-	transposase
641	 42.63	-1	738895..739884	-	329	27367104	-	VV2_0683	-	transcriptional regulator
642	 47.59	0	740094..740675	+	193	27367105	-	VV2_0684	-	esterase of the alpha/beta hydrolase fold
643	 45.43	0	740839..741855	+	338	27367106	-	VV2_0685	-	ABC-type sulfate transport system, periplasmic component
644	 47.94	0	741856..742704	+	282	27367107	-	VV2_0686	-	ABC-type sulfate transport system, permease component
645	 46.92	0	742701..743576	+	291	27367108	-	VV2_0687	-	ABC-type sulfate transport system, permease component
646	 49.23	0	743598..744635	+	345	27367109	-	VV2_0688	-	ABC-type sulfate/molybdate transport system, ATPase component
647	 51.94	+1	744750..744878	+	42	27367110	-	VV2_0689	-	transcriptional regulator
648	 48.15	0	745158..745373	+	71	27367111	-	VV2_0691	-	hypothetical protein
649	 39.62	-2	745859..746653	+	264	27367112	-	VV2_0692	-	Sir2 family NAD-dependent protein deacetylase
650	 44.44	0	747120..747272	-	50	27367113	-	VV2_0693	-	transposase
651	 43.74	-1	747727..748773	+	348	27367114	-	VV2_0694	-	permease
652	 46.26	0	748979..749272	+	97	27367115	-	VV2_0695	-	transposase
653	 46.15	0	749432..749860	+	142	27367116	-	VV2_0697	-	hypothetical protein
654	 43.54	-1	750510..752174	+	554	27367117	-	VV2_0698	-	D-glutamate deacylase
655	 42.81	-1	752237..753217	+	326	27367118	-	VV2_0699	-	putative GTPase
656	 43.11	-1	753362..754363	+	333	27367119	-	VV2_0700	-	Beta-lactamase class A
657	 49.64	0	754404..755912	+	502	27367120	-	VV2_0701	-	Beta-lactamase class C
658	 45.15	0	756355..757860	-	501	27367121	-	VV2_0702	-	phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase
659	 43.25	-1	757921..758928	-	335	27367122	-	VV2_0703	-	major facilitator superfamily permease
660	 46.35	0	759130..760212	-	360	27367123	-	VV2_0704	-	multidrug resistance efflux pump
661	 47.50	0	760803..761981	-	392	27367124	-	VV2_0706	-	hypothetical protein
662	 43.94	-1	762283..762546	-	87	27367125	-	VV2_0707	-	hypothetical protein
663	 44.57	0	762570..763085	-	171	27367126	-	VV2_0708	-	hypothetical protein
47.71	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.