IslandPath Analysis: Vibrio vulnificus CMCP6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.71   STD DEV: 3.40
Vibrio vulnificus CMCP6 chromosome II, complete sequence - 1..1844853
1557 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
469	 51.36	+1	552833..553642	+	269	27366932	-	VV2_0498	-	enoyl-CoA hydratase/carnithine racemase
470	 52.96	+1	553639..554178	+	179	27366933	-	VV2_0499	-	isopropylmalate/homocitrate/citramalate synthase
471	 49.17	0	554135..554557	+	140	27366934	-	VV2_0500	-	isopropylmalate/homocitrate/citramalate synthase
472	 46.95	0	554816..555373	+	185	27366935	-	VV2_0501	-	peroxiredoxin
473	 48.76	0	555510..557078	+	522	27366936	-	VV2_0502	-	Alkyl hydroperoxide reductase, large subunit
474	 38.97	-2	557382..557594	+	70	27366937	-	VV2_0503	-	cold shock protein
475	 48.40	0	558376..559344	-	322	27366938	-	VV2_0505	-	Ca2+/Na+ antiporter
476	 44.62	0	559770..560354	+	194	27366939	-	VV2_0506	-	transcriptional regulator
477	 50.29	0	560442..561473	+	343	27366940	-	VV2_0507	-	putative NADP-dependent oxidoreductase
478	 49.84	0	561483..562100	+	205	27366941	-	VV2_0508	-	glutathione S-transferase
479	 44.63	0	562339..562515	+	58	27366942	-	VV2_0509	-	hypothetical protein
480	 47.00	0	562748..564145	+	465	161501863	uhpT	VV2_0510	-	sugar phosphate antiporter
481	 50.65	0	564279..564890	+	203	27366944	-	VV2_0511	-	response regulator
482	 49.40	0	564890..566389	+	499	27366945	-	VV2_0512	-	sensory histidine kinase UhpB
483	 49.96	0	566395..567735	+	446	27366946	-	VV2_0513	-	regulatory protein UhpC
484	 51.32	+1	567879..568445	+	188	27366947	-	VV2_0514	-	phosphomannose isomerase
485	 49.92	0	568442..569050	+	202	27366948	-	VV2_0515	-	phosphomannose isomerase
486	 46.00	0	569506..570879	-	457	27366949	-	VV2_0516	-	GGDEF domain-containing protein
487	 46.91	0	571191..572354	+	387	27366950	-	VV2_0517	-	hypothetical protein
488	 43.01	-1	572314..572592	-	92	27366951	-	VV2_0518	-	hypothetical protein
489	 44.76	0	573052..573261	+	69	27366952	-	VV2_0519	-	cold shock protein
490	 46.85	0	573336..573875	+	179	27366953	-	VV2_0520	-	hypothetical protein
491	 47.59	0	573868..574407	+	179	27366954	-	VV2_0521	-	hypothetical protein
492	 46.11	0	574476..574835	+	119	27366955	-	VV2_0522	-	glutaredoxin
493	 46.58	0	574929..575162	-	77	27366956	-	VV2_0523	-	Outer membrane protein
494	 45.59	0	575198..575458	-	86	27366957	-	VV2_0524	-	hypothetical protein
495	 46.63	0	575778..576371	+	197	27366958	-	VV2_0525	-	Thiol-disulfide isomerase
496	 43.19	-1	576437..576862	+	141	27366959	-	VV2_0526	-	FKBP-type peptidyl-prolyl cis-trans isomerase 1
497	 46.93	0	576938..577540	-	200	27366960	-	VV2_0527	-	phosphatase/phosphohexomutase
498	 47.19	0	577959..579647	+	562	27366961	-	VV2_0528	-	methyl-accepting chemotaxis protein
499	 50.81	0	579726..582878	-	1050	27366962	-	VV2_0529	-	cation/multidrug efflux pump
500	 49.65	0	582888..584015	-	375	27366963	-	VV2_0530	-	membrane-fusion protein
501	 46.19	0	584361..584819	+	152	27366964	-	VV2_0531	-	deoxycytidylate deaminase
502	 48.20	0	584911..586047	-	378	27366965	-	VV2_0532	-	peptidase T
503	 45.23	0	586365..587129	-	254	27366966	-	VV2_0533	-	hypothetical protein
504	 49.17	0	587332..588240	-	302	27366967	-	VV2_0534	-	oxidoreductase
505	 46.96	0	588334..588744	+	136	27366968	-	VV2_0535	-	transcriptional regulator
506	 41.72	-1	588707..589207	-	166	27366969	-	VV2_0536	-	hypothetical protein
507	 38.89	-2	589421..589654	-	77	27366970	-	VV2_0537	-	hypothetical protein
508	 40.57	-2	589761..591668	+	635	27366971	-	VV2_0538	-	hypothetical protein
509	 50.93	0	592035..593438	+	467	27366972	-	VV2_0540	-	chloride channel protein
510	 46.98	0	593793..594686	+	297	27366973	-	VV2_0541	-	tellurite resistance protein
511	 48.75	0	594730..595968	-	412	27366974	-	VV2_0542	-	manganese transporter NRAMP
512	 48.47	0	596234..596887	-	217	27366975	folE	VV2_0543	-	GTP cyclohydrolase I
513	 49.03	0	597063..598298	+	411	27366976	-	VV2_0544	-	molybdopterin biosynthesis protein
514	 49.54	0	598332..599084	+	250	27366977	-	VV2_0545	-	molybdopterin biosynthesis protein MoeB
515	 45.83	0	599231..599542	+	103	27366978	-	VV2_0546	-	hypothetical protein
516	 45.61	0	599555..600385	+	276	27366979	-	VV2_0547	-	rhodanese-related sulfurtransferase
517	 45.41	0	600415..602691	+	758	27366980	-	VV2_0548	-	signal transduction protein
518	 48.65	0	602769..604067	-	432	27366981	-	VV2_0549	-	chitinase
519	 50.15	0	604209..605201	-	330	27366982	-	VV2_0550	-	transcriptional regulator
520	 47.53	0	605665..606615	+	316	27366983	-	VV2_0552	-	transaldolase B
521	 51.31	+1	606697..608688	+	663	27366984	-	VV2_0553	-	transketolase
522	 49.29	0	609000..609563	+	187	27366985	-	VV2_0555	-	hypothetical protein
523	 48.12	0	609560..611953	+	797	27366986	-	VV2_0556	-	signal transduction protein
524	 47.34	0	612003..613565	-	520	27366987	-	VV2_0557	-	methyl-accepting chemotaxis protein
525	 47.86	0	613876..614928	-	350	27366988	-	VV2_0558	-	phospho-2-dehydro-3-deoxyheptonate aldolase
526	 47.49	0	615351..616424	+	357	27366989	-	VV2_0559	-	Outer membrane protein
527	 47.67	0	616540..617439	-	299	27366990	-	VV2_0560	-	protoheme IX farnesyltransferase
528	 49.11	0	617432..618439	-	335	27366991	-	VV2_0561	-	hypothetical protein
529	 45.13	0	618471..619004	-	177	27366992	-	VV2_0562	-	hypothetical protein
530	 50.06	0	618985..619761	-	258	27366993	-	VV2_0563	-	hypothetical protein
531	 46.78	0	619998..620882	-	294	27366994	-	VV2_0565	-	Heme/copper-type cytochrome/quinol oxidase, subunit 3
532	 50.89	0	620879..621442	-	187	27366995	-	VV2_0566	-	cytochrome C oxidase assembly protein
533	 49.69	0	621497..623128	-	543	27366996	-	VV2_0567	-	Heme/copper-type cytochrome/quinol oxidase, subunit 1
534	 49.96	0	623125..624261	-	378	27366997	-	VV2_0568	-	cytochrome c, mono- and diheme variants
535	 51.44	+1	624615..626321	+	568	27366998	-	VV2_0569	-	phosphomannomutase
536	 41.84	-1	626381..626803	-	140	27366999	-	VV2_0570	-	histone acetyltransferase HPA2
537	 45.50	0	626971..627603	-	210	27367000	-	VV2_0571	-	putative threonine efflux protein
538	 48.74	0	627834..628664	+	276	27367001	-	VV2_0572	-	AraC-type DNA-binding domain-containing protein
539	 52.38	+1	628734..629447	+	237	27367002	-	VV2_0573	-	branched-chain amino acid permease
540	 48.25	0	629444..629758	+	104	27367003	-	VV2_0574	-	hypothetical protein
541	 48.94	0	629780..630394	-	204	27367004	-	VV2_0575	-	2-keto-4-pentenoate hydratase
542	 46.41	0	630497..630955	-	152	27367005	-	VV2_0576	-	transcriptional regulator
543	 51.54	+1	631070..631492	+	140	27367006	-	VV2_0577	-	redox protein, regulator of disulfide bond formation
544	 48.52	0	631599..632645	-	348	27367007	-	VV2_0578	-	Outer membrane protein
545	 48.17	0	633112..633603	+	163	27367008	-	VV2_0579	-	Thiol-disulfide isomerase
546	 47.44	0	633756..634733	+	325	27367009	-	VV2_0580	-	Outer membrane protein
547	 46.51	0	635143..636918	+	591	27367010	-	VV2_0581	-	EAL domain-containing protein
548	 50.40	0	637256..638134	+	292	27367011	-	VV2_0582	-	DMT family permease
549	 47.03	0	638199..638804	+	201	27367012	-	VV2_0583	-	glutaredoxin
550	 41.48	-1	638898..639032	-	44	27367013	-	VV2_0584	-	hypothetical protein
551	 45.30	0	639226..639576	-	116	27367014	-	VV2_0585	-	hypothetical protein
552	 47.65	0	639635..640828	-	397	27367015	-	VV2_0586	-	major facilitator superfamily permease
553	 47.41	0	640932..641819	+	295	27367016	-	VV2_0587	-	transcriptional regulator
554	 46.20	0	642011..643852	+	613	27367017	-	VV2_0588	-	signal transduction protein
555	 47.66	0	643987..644349	-	120	27367018	-	VV2_0589	-	YjgF family translation initiation inhibitor
556	 49.18	0	644376..645416	-	346	27367019	-	VV2_0590	-	3-carboxymuconate cyclase
557	 50.24	0	645495..647966	-	823	27367020	-	VV2_0591	-	translation initiation factor 2
558	 52.13	+1	648046..649524	-	492	27367021	-	VV2_0592	-	Na+/proline symporter
559	 49.36	0	649753..650145	-	130	27367022	-	VV2_0593	-	YjgF family translation initiation inhibitor
560	 48.58	0	650221..651630	-	469	27367023	-	VV2_0594	-	N-acyl-D-aspartate/D-glutamate deacylase
561	 51.97	+1	651837..653102	+	421	27367024	-	VV2_0595	-	amino acid aldolase or racemase
562	 49.31	0	653199..654062	+	287	27367025	-	VV2_0596	-	transcriptional regulator
563	 55.10	+2	654308..655258	+	316	27367026	-	VV2_0597	-	membrane-fusion protein
564	 51.02	0	655262..656188	+	308	27367027	-	VV2_0598	-	ABC-type multidrug transport system, ATPase component
565	 50.18	0	656185..657282	+	365	27367028	-	VV2_0599	-	ABC-type multidrug transport system, permease component
566	 50.32	0	657363..658304	+	313	27367029	-	VV2_0600	-	dehydrogenase
567	 47.62	0	658385..659014	-	209	27367030	-	VV2_0601	-	transcriptional regulator
568	 47.77	0	659153..660226	+	357	27367031	-	VV2_0602	-	Zn-dependent hydrolase
47.71	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.