IslandPath Analysis: Vibrio vulnificus CMCP6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.71   STD DEV: 3.40
Vibrio vulnificus CMCP6 chromosome II, complete sequence - 1..1844853
1557 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
299	 41.60	-1	334806..335180	-	124	27366762	-	VV2_0319	-	hypothetical protein
300	 44.42	0	335387..336631	+	414	27366763	-	VV2_0320	-	GGDEF domain-containing protein
301	 45.38	0	336683..337678	-	331	27366764	-	VV2_0321	-	hypothetical protein
302	 45.05	0	337681..338619	-	312	27366765	-	VV2_0322	-	response regulator
303	 43.14	-1	338780..338983	+	67	27366766	-	VV2_0323	-	hypothetical protein
304	 46.67	0	338904..339218	+	104	27366767	-	VV2_0324	-	hypothetical protein
305	 48.15	0	339255..339740	-	161	27366768	-	VV2_0325	-	transcriptional regulator
306	 46.12	0	339848..340762	+	304	27366769	-	VV2_0326	-	DMT family permease
307	 47.79	0	340773..341879	-	368	27366770	modC	VV2_0327	-	molybdate transporter ATP-binding protein
308	 47.02	0	341879..342565	-	228	27366771	modB	VV2_0328	-	molybdate ABC transporter permease protein
309	 46.56	0	342562..343317	-	251	27366772	-	VV2_0329	-	ABC-type molybdate transport system, periplasmic component
310	 48.42	0	343328..344779	-	483	27366773	-	VV2_0330	-	cobyric acid synthase
311	 45.26	0	344934..345302	+	122	27366774	-	VV2_0331	-	hypothetical protein
312	 43.02	-1	345447..345983	+	178	27366775	-	VV2_0332	-	hypothetical protein
313	 44.34	0	346113..346730	-	205	27366776	-	VV2_0333	-	hypothetical protein
314	 46.21	0	346744..347931	-	395	27366777	-	VV2_0334	-	aromatic amino acid aminotransferase
315	 46.91	0	348142..350454	-	770	27366778	-	VV2_0335	-	methyl-accepting chemotaxis protein
316	 48.29	0	350669..351136	-	155	27366779	nrdG	VV2_0336	-	anaerobic ribonucleotide reductase-activating protein
317	 45.54	0	351211..353331	-	706	27366780	-	VV2_0337	-	anaerobic ribonucleoside triphosphate reductase
318	 44.74	0	353628..354521	+	297	27366781	-	VV2_0338	-	metal-dependent hydrolase
319	 49.37	0	354683..357832	-	1049	27366782	-	VV2_0340	-	cation/multidrug efflux pump
320	 48.76	0	357834..358838	-	334	27366783	-	VV2_0341	-	membrane-fusion protein
321	 46.71	0	358877..359302	-	141	27366784	-	VV2_0342	-	transporter component
322	 50.35	0	359353..359775	-	140	27366785	-	VV2_0343	-	transporter component
323	 42.31	-1	359791..360102	-	103	27366786	-	VV2_0344	-	transcriptional regulator
324	 41.40	-1	360255..360440	+	61	27366787	-	VV2_0345	-	rhodanese-related sulfurtransferase
325	 47.54	0	360526..362229	+	567	27366788	-	VV2_0346	-	rhodanese-related sulfurtransferase
326	 44.77	0	362574..364121	+	515	27366789	-	VV2_0347	-	hypothetical protein
327	 47.91	0	364132..365448	+	438	27366790	-	VV2_0348	-	hypothetical protein
328	 47.93	0	365518..366606	-	362	27366791	-	VV2_0349	-	3-oxoacyl-(acyl carrier protein) synthase III
329	 46.46	0	366940..367335	+	131	27366792	-	VV2_0350	-	thioredoxin 2
330	 49.21	0	367618..368688	+	356	27366793	-	VV2_0351	-	major facilitator superfamily permease
331	 46.33	0	368694..369578	-	294	27366794	-	VV2_0352	-	AraC-type DNA-binding domain-containing protein
332	 47.33	0	369630..371015	+	461	27366795	-	VV2_0353	-	Na+-driven multidrug efflux pump
333	 48.58	0	370984..371370	-	128	27366796	-	VV2_0354	-	hypothetical protein
334	 43.63	-1	371517..371720	+	67	27366797	-	VV2_0355	-	hypothetical protein
335	 48.92	0	371801..373417	-	538	27366798	-	VV2_0356	-	methyl-accepting chemotaxis protein
336	 49.66	0	373923..375251	+	442	27366799	-	VV2_0358	-	anaerobic C4-dicarboxylate transporter
337	 48.04	0	375370..376647	-	425	27366800	-	VV2_0359	-	TPR repeat-containing protein
338	 50.70	0	376647..377285	-	212	27366801	-	VV2_0360	-	periplasmic protein TonB
339	 48.89	0	377285..377689	-	134	27366802	-	VV2_0361	-	biopolymer transport protein
340	 48.39	0	377686..378243	-	185	27366803	-	VV2_0362	-	biopolymer transport protein
341	 50.44	0	378249..379616	-	455	27366804	-	VV2_0363	-	biopolymer transport protein
342	 46.88	0	379617..380384	-	255	27366805	-	VV2_0364	-	chromosome segregation ATPase
343	 45.40	0	380647..381135	-	162	27366806	-	VV2_0365	-	hypothetical protein
344	 44.91	0	381261..381692	+	143	27366807	-	VV2_0366	-	hypothetical protein
345	 50.20	0	381699..382457	-	252	27366808	-	VV2_0367	-	uroporphyrinogen-III methylase
346	 47.79	0	382625..383482	-	285	27366809	-	VV2_0368	-	formate/nitrate transporter
347	 46.91	0	383635..383958	-	107	27366810	nirD	VV2_0369	-	nitrite reductase small subunit
348	 49.18	0	383973..386534	-	853	27366811	-	VV2_0370	-	NAD(P)H-nitrite reductase
349	 49.58	0	387043..388587	+	514	27366812	-	VV2_0372	-	methyl-accepting chemotaxis protein
350	 48.15	0	388653..391487	-	944	27366813	-	VV2_0373	-	WD-40 repeat-containing protein
351	 43.21	-1	392066..392308	-	80	27366814	-	VV2_0374	-	hypothetical protein
352	 43.07	-1	392536..393213	-	225	27366815	-	VV2_0375	-	Acyl dehydratase
353	 47.09	0	393710..397822	+	1370	27366816	-	VV2_0376	-	Signal transduction histidine kinase
354	 46.79	0	397824..398663	+	279	27366817	-	VV2_0377	-	methylase of chemotaxis methyl-accepting protein
355	 46.56	0	398666..399247	+	193	27366818	-	VV2_0378	-	chemotaxis response regulator
356	 46.41	0	399250..400266	+	338	27366819	-	VV2_0379	-	response regulator
357	 49.19	0	400492..401229	+	245	27366820	-	VV2_0380	-	transcriptional regulator
358	 44.44	0	401237..402073	+	278	27366821	-	VV2_0381	-	arginase
359	 48.21	0	402117..403400	-	427	27366822	-	VV2_0382	-	superfamily II DNA/RNA helicase
360	 48.19	0	403768..406755	+	995	27366823	-	VV2_0383	-	hypothetical protein
361	 47.21	0	406812..407798	-	328	27366824	-	VV2_0385	-	putative GTPase
362	 48.82	0	407950..408627	+	225	27366825	-	VV2_0386	-	SAM-dependent methyltransferase
363	 45.04	0	408660..410624	-	654	27366826	-	VV2_0387	-	GGDEF domain-containing protein
364	 48.77	0	411054..414155	+	1033	27366827	-	VV2_0388	-	hypothetical protein
365	 44.44	0	414245..414568	-	107	27366828	-	VV2_0389	-	ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenase
366	 52.09	+1	414572..417055	-	827	27366829	-	VV2_0390	-	NAD(P)H-nitrite reductase
367	 51.84	+1	417066..417908	-	280	27366830	-	VV2_0391	-	ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component
368	 49.95	0	417920..418888	-	322	27366831	-	VV2_0392	-	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
369	 51.43	+1	418916..420379	-	487	27366832	-	VV2_0393	-	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component
370	 48.01	0	420543..421094	-	183	27366833	-	VV2_0394	-	response regulator
371	 51.60	+1	421280..422188	-	302	27366834	-	VV2_0395	-	dienelactone hydrolase
372	 51.97	+1	422318..423283	-	321	27366835	-	VV2_0396	-	hypothetical protein
373	 54.92	+2	423350..424243	-	297	27366836	-	VV2_0397	-	uroporphyrinogen-III methylase
374	 53.44	+1	424270..426915	-	881	27366837	-	VV2_0398	-	anaerobic dehydrogenase
375	 46.28	0	427133..427549	-	138	27366838	-	VV2_0399	-	acetyltransferase
376	 48.54	0	427972..429372	+	466	27366839	-	VV2_0400	-	glycosidase
377	 51.13	+1	429463..431328	-	621	27366840	-	VV2_0401	-	methyl-accepting chemotaxis protein
378	 48.70	0	431549..433435	-	628	27366841	-	VV2_0402	-	methyl-accepting chemotaxis protein
379	 45.61	0	434259..434714	+	151	27366842	-	VV2_0403	-	membrane-fusion protein
380	 48.61	0	434725..436131	+	468	27366843	-	VV2_0404	-	cytolysin
381	 48.58	0	436575..437951	+	458	27366844	glpT	VV2_0405	-	sn-glycerol-3-phosphate transporter
382	 46.84	0	438201..439259	+	352	27366845	glpQ	VV2_0407	-	glycerophosphodiester phosphodiesterase
383	 47.62	0	439528..440913	+	461	27366846	-	VV2_0408	-	Zn-dependent protease
384	 49.18	0	440913..442256	+	447	27366847	-	VV2_0409	-	Zn-dependent protease
385	 50.09	0	442496..443050	+	184	27366848	-	VV2_0410	-	hypothetical protein
386	 48.41	0	443385..444764	+	459	27366849	dcuC	VV2_0411	-	C4-dicarboxylate transporter DcuC
387	 45.69	0	444969..445559	+	196	27366850	-	VV2_0412	-	hypothetical protein
388	 48.38	0	445559..447412	+	617	27366851	-	VV2_0413	-	Zn-dependent protease with chaperone function
389	 44.69	0	447756..449120	+	454	27366852	-	VV2_0414	-	succinyl-CoA synthetase, alpha subunit
390	 51.19	+1	449777..450280	-	167	27366853	-	VV2_0415	-	Rhs family protein
391	 44.00	-1	450827..451726	-	299	27366854	-	VV2_0416	-	hypothetical protein
392	 46.78	0	451876..452046	+	56	27366855	-	VV2_0418	-	transcriptional regulator
393	 38.37	-2	452124..452540	-	138	27366856	-	VV2_0419	-	soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein
394	 46.50	0	452764..453348	-	194	27366857	-	VV2_0420	-	polyribonucleotide nucleotidyltransferase
395	 42.54	-1	453455..453682	-	75	27366858	-	VV2_0421	-	transposase
396	 44.71	0	453817..454326	-	169	27366859	-	VV2_0422	-	hypothetical protein
397	 41.67	-1	454323..454478	-	51	27366860	-	VV2_0423	-	hypothetical protein
398	 35.94	-2	454484..454867	-	127	27366861	-	VV2_0424	-	helicase subunit of the DNA excision repair complex
47.71	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.