IslandPath Analysis: Vibrio vulnificus CMCP6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.71   STD DEV: 3.40
Vibrio vulnificus CMCP6 chromosome II, complete sequence - 1..1844853
1557 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
130	 47.97	0	143341..146940	+	1199	27366593	-	VV2_0137	-	Signal transduction histidine kinase
131	 46.97	0	146944..148710	+	588	27366594	-	VV2_0138	-	EAL domain-containing protein
132	 43.23	-1	148712..150379	+	555	27366595	-	VV2_0139	-	response regulator
133	 43.16	-1	150536..150769	+	77	27366596	-	VV2_0140	-	hypothetical protein
134	 45.80	0	150876..152768	-	630	27366597	-	VV2_0141	-	signal transduction protein
135	 47.06	0	153606..157094	+	1162	27366598	-	VV2_0142	-	Ig-like domain-containing surface protein
136	 42.63	-1	157184..158011	-	275	27366599	-	VV2_0143	-	ABC-type phosphate transport system, periplasmic component
137	 44.13	-1	158151..158576	+	141	27366600	-	VV2_0144	-	hypothetical protein
138	 44.21	-1	158632..159357	-	241	27366601	-	VV2_0145	-	AraC-type DNA-binding domain-containing protein
139	 46.97	0	159574..161568	-	664	27366602	-	VV2_0146	-	exoribonuclease II
140	 48.75	0	161946..163871	+	641	27366603	-	VV2_0147	-	superfamily II DNA/RNA helicase
141	 47.99	0	164213..165406	+	397	27366604	-	VV2_0148	-	acetate kinase
142	 49.04	0	165538..167103	-	521	27366605	-	VV2_0149	-	arylsulfatase A
143	 47.32	0	167375..168232	-	285	27366606	-	VV2_0150	-	transcriptional regulator
144	 48.02	0	168367..169884	+	505	27366607	-	VV2_0151	-	arylsulfatase A
145	 47.28	0	169981..171285	+	434	27366608	-	VV2_0152	-	arylsulfatase regulator
146	 44.44	0	171391..171498	+	35	27366609	-	VV2_0153	-	hypothetical protein
147	 53.83	+1	171492..172379	+	295	27366610	-	VV2_0154	-	MoxR-like ATPase
148	 51.71	+1	172391..173353	+	320	27366611	-	VV2_0155	-	hypothetical protein
149	 48.55	0	173354..173905	+	183	27366612	-	VV2_0156	-	hypothetical protein
150	 52.06	+1	173919..174986	+	355	27366613	-	VV2_0157	-	von Willebrand factor type A (vWA) domain-containing protein
151	 48.62	0	174979..176718	+	579	27366614	-	VV2_0158	-	TPR repeat-containing protein
152	 51.53	+1	176715..178055	+	446	27366615	-	VV2_0159	-	hypothetical protein
153	 49.23	0	178290..179195	+	301	27366616	-	VV2_0160	-	transcriptional regulator
154	 49.91	0	179275..180975	-	566	27366617	-	VV2_0161	-	hypothetical protein
155	 51.40	+1	181000..181785	-	261	27366618	-	VV2_0162	-	hypothetical protein
156	 48.60	0	181952..183274	+	440	27366619	-	VV2_0163	-	arylsulfatase regulator
157	 50.89	0	183295..184365	+	356	27366620	-	VV2_0164	-	TPR repeat-containing protein
158	 48.43	0	184362..185990	-	542	27366621	-	VV2_0165	-	hypothetical protein
159	 48.82	0	186058..187290	-	410	27366622	-	VV2_0166	-	major facilitator superfamily permease
160	 47.06	0	187866..188222	+	118	27366623	-	VV2_0167	-	NADH:ubiquinone oxidoreductase subunit 2
161	 45.65	0	189158..190480	+	440	27366624	-	VV2_0168	-	transposase
162	 50.07	0	190531..192018	-	495	27366625	-	VV2_0169	-	major facilitator superfamily permease
163	 50.88	0	192029..193054	-	341	27366626	-	VV2_0170	-	multidrug resistance efflux pump
164	 47.37	0	193301..193642	-	113	27366627	-	VV2_0171	-	transcriptional regulator
165	 48.53	0	193698..194816	+	372	27366628	-	VV2_0172	-	hypothetical protein
166	 45.86	0	194863..195780	-	305	27366629	-	VV2_0173	-	transcriptional regulator
167	 46.12	0	195907..196344	+	145	27366630	-	VV2_0174	-	hypothetical protein
168	 50.19	0	196564..196824	+	86	27366631	-	VV2_0175	-	hypothetical protein
169	 47.49	0	196947..197405	+	152	27366632	-	VV2_0176	-	hypothetical protein
170	 49.13	0	197595..198341	+	248	27366633	-	VV2_0177	-	amidohydrolase
171	 47.58	0	198841..199605	+	254	27366634	-	VV2_0178	-	nucleotidyltransferase
172	 51.50	+1	199658..201418	-	586	27366635	-	VV2_0179	-	ABC-type multidrug transport system, ATPase and permease component
173	 43.49	-1	201703..202155	+	150	27366636	-	VV2_0180	-	S-adenosylhomocysteine hydrolase
174	 43.36	-1	202157..202555	+	132	27366637	-	VV2_0181	-	inorganic pyrophosphatase/exopolyphosphatase
175	 37.62	-2	202758..202967	-	69	27366638	-	VV2_0182	-	hypothetical protein
176	 37.93	-2	203025..204893	-	622	27366639	-	VV2_0183	-	deoxycytidylate deaminase
177	 36.56	-2	205022..205114	+	30	27366640	-	VV2_0184	-	hypothetical protein
178	 38.44	-2	205402..205734	+	110	27366641	-	VV2_0185	-	superfamily I DNA/RNA helicase
179	 51.55	+1	205841..208705	-	954	27366642	-	VV2_0186	-	glycine dehydrogenase
180	 46.46	0	208810..209190	-	126	27366643	-	VV2_0187	-	glycine cleavage system protein H
181	 49.69	0	209233..210528	-	431	27366644	-	VV2_0188	-	serine hydroxymethyltransferase
182	 48.08	0	210912..211535	+	207	27366645	-	VV2_0189	-	transcriptional regulator
183	 49.91	0	211813..212958	+	381	27366646	-	VV2_0190	-	glycine cleavage system T protein
184	 50.00	0	213108..214139	+	343	27366647	-	VV2_0191	-	secreted trypsin-like serine protease
185	 46.56	0	214129..214854	-	241	27366648	-	VV2_0192	-	transcriptional regulator
186	 50.05	0	215061..216089	+	342	27366649	-	VV2_0193	-	membrane-fusion protein
187	 49.49	0	216089..217159	+	356	27366650	-	VV2_0194	-	membrane-fusion protein
188	 49.41	0	217156..220215	+	1019	27366651	-	VV2_0195	-	cation/multidrug efflux pump
189	 46.18	0	220375..220950	-	191	27366652	-	VV2_0196	-	Outer membrane protein
190	 51.16	+1	221227..222954	-	575	27366653	-	VV2_0198	-	phosphotransferase system, fructose-specific IIC component
191	 52.56	+1	222974..223951	-	325	27366654	-	VV2_0199	-	fructose-1-phosphate kinase
192	 50.83	0	223961..225103	-	380	27366655	-	VV2_0200	-	bifunctional fructose-specific PTS IIA/HPr protein
193	 48.11	0	225561..226541	+	326	27366656	-	VV2_0201	-	DNA-binding transcriptional regulator FruR
194	 46.75	0	226567..227535	-	322	27366657	-	VV2_0202	-	hypothetical protein
195	 46.62	0	227548..228360	-	270	27366658	-	VV2_0203	-	amino acid ABC transporter periplasmic protein
196	 47.03	0	228506..229060	+	184	27366659	-	VV2_0204	-	hypothetical protein
197	 44.44	0	229132..229959	-	275	27366660	-	VV2_0205	-	EAL domain-containing protein
198	 51.22	+1	230282..231751	-	489	27366661	-	VV2_0206	-	pyruvate kinase
199	 48.41	0	231828..233207	-	459	27366662	-	VV2_0207	-	sugar phosphate permease
200	 48.54	0	233486..234787	+	433	27366663	-	VV2_0208	-	ABC-type Fe3+ transport system, periplasmic component
201	 47.84	0	234788..237151	+	787	27366664	-	VV2_0209	-	Signal transduction histidine kinase
202	 48.66	0	237141..238406	+	421	27366665	-	VV2_0210	-	response regulator
203	 49.70	0	238466..239614	-	382	27366666	-	VV2_0211	-	oxidoreductase
204	 46.42	0	239738..240616	+	292	27366667	-	VV2_0212	-	AraC-type DNA-binding domain-containing protein
205	 50.86	0	240955..244167	+	1070	27366668	-	VV2_0213	-	chitinase
206	 47.74	0	244242..245456	-	404	27366669	glgC	VV2_0214	-	glucose-1-phosphate adenylyltransferase
207	 48.28	0	245900..247063	-	387	27366670	-	VV2_0216	-	formyltetrahydrofolate synthetase
208	 50.32	0	247032..247649	-	205	27366671	-	VV2_0217	-	formyltetrahydrofolate synthetase
209	 48.12	0	247831..249135	-	434	27366672	-	VV2_0218	-	sugar kinase
210	 46.30	0	249260..249745	-	161	27366673	-	VV2_0219	-	hypothetical protein
211	 43.45	-1	250050..250553	+	167	27366674	-	VV2_0220	-	hypothetical protein
212	 44.90	0	250644..252389	+	581	27366675	-	VV2_0221	-	response regulator
213	 44.27	-1	252630..253214	+	194	27366676	-	VV2_0222	-	phosphatase/phosphohexomutase
214	 47.80	0	253690..255078	-	462	27366677	-	VV2_0224	-	methyl-accepting chemotaxis protein
215	 46.97	0	255477..256070	+	197	27366678	-	VV2_0226	-	hypothetical protein
216	 47.02	0	256126..257382	+	418	27366679	-	VV2_0227	-	superfamily II DNA/RNA helicase
217	 44.65	0	257483..258286	-	267	27366680	-	VV2_0228	-	EAL domain-containing protein
218	 46.18	0	258583..259119	-	178	27366681	-	VV2_0229	-	hypothetical protein
219	 44.44	0	259577..260116	+	179	27366682	-	VV2_0230	-	cytochrome B561
220	 44.56	0	260113..260682	+	189	27366683	-	VV2_0231	-	hypothetical protein
221	 46.76	0	260787..262238	-	483	27366684	-	VV2_0232	-	CBS domain-containing protein
222	 47.90	0	262490..263395	+	301	27366685	-	VV2_0234	-	transcriptional regulator
223	 47.89	0	263592..264065	+	157	27366686	-	VV2_0235	-	chloride channel protein EriC
224	 47.24	0	264272..265903	-	543	27366687	-	VV2_0236	-	ATP-dependent endonuclease
225	 46.62	0	266142..267887	+	581	27366688	-	VV2_0237	-	5'-nucleotidase/2',3'-cyclic phosphodiesterase
226	 46.46	0	268461..269435	+	324	27366689	-	VV2_0239	-	membrane protein TerC
227	 39.58	-2	269710..269901	+	63	27366690	-	VV2_0240	-	hypothetical protein
228	 47.07	0	270100..270951	+	283	27366691	-	VV2_0241	-	DMT family permease
229	 47.73	0	271139..272347	+	402	27366692	-	VV2_0243	-	arginase/agmatinase/formimionoglutamate hydrolase
47.71	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.