IslandPath Analysis: Vibrio vulnificus CMCP6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.71   STD DEV: 3.40
Vibrio vulnificus CMCP6 chromosome II, complete sequence - 1..1844853
1557 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1302	 52.54	+1	1548847..1549752	+	301	27367766	-	VV2_1402	-	DMT family permease
1303	 47.30	0	1549724..1550797	-	357	27367767	-	VV2_1403	-	GGDEF domain-containing protein
1304	 43.87	-1	1550919..1551269	+	116	27367768	-	VV2_1404	-	hypothetical protein
1305	 47.71	0	1551389..1552174	+	261	27367769	-	VV2_1405	-	ABC-type amino acid transport/signal transduction systems
1306	 49.82	0	1552254..1553885	-	543	27367770	-	VV2_1406	-	endonuclease I
1307	 49.07	0	1553242..1553457	+	71	27367771	-	VV2_1407	-	hypothetical protein
1308	 49.46	0	1554163..1556184	-	673	27367772	-	VV2_1408	-	glycosidase
1309	 49.20	0	1556429..1556863	-	144	161501855	-	VV2_1409	-	hypothetical protein
1310	 48.50	0	1557001..1558932	-	643	27367774	-	VV2_1410	-	phosphoglycerol transferase
1311	 47.73	0	1558943..1560595	-	550	27367775	-	VV2_1411	-	membrane-associated metal-dependent hydrolase
1312	 50.42	0	1560601..1560957	-	118	27367776	-	VV2_1412	-	diacylglycerol kinase
1313	 47.15	0	1561289..1562569	-	426	27367777	-	VV2_1413	-	Signal transduction histidine kinase
1314	 47.94	0	1562579..1563283	-	234	27367778	-	VV2_1414	-	response regulator
1315	 50.63	0	1563561..1564196	-	211	27367779	-	VV2_1416	-	putative NADH-flavin reductase
1316	 49.17	0	1564458..1565360	+	300	27367780	-	VV2_1417	-	transcriptional regulator
1317	 49.03	0	1565395..1566114	-	239	27367781	-	VV2_1418	-	Short-chain alcohol dehydrogenase of unknown specificity
1318	 49.67	0	1566252..1567169	+	305	27367782	-	VV2_1419	-	transcriptional regulator
1319	 45.58	0	1567156..1567506	-	116	27367783	-	VV2_1420	-	hypothetical protein
1320	 42.42	-1	1567636..1567932	-	98	27367784	-	VV2_1421	-	1,4-alpha-glucan branching enzyme
1321	 45.57	0	1568170..1568496	+	108	27367785	-	VV2_1423	-	hypothetical protein
1322	 44.28	-1	1568542..1569144	+	200	27367786	-	VV2_1424	-	Thiol-disulfide isomerase
1323	 48.03	0	1569277..1571175	+	632	27367787	-	VV2_1425	-	glutamate decarboxylase
1324	 51.45	+1	1571244..1571900	-	218	27367788	ribB	VV2_1426	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
1325	 53.62	+1	1571936..1572142	+	68	27367789	-	VV2_1427	-	hypothetical protein
1326	 45.56	0	1572335..1572874	+	179	27367790	-	VV2_1428	-	nicotinamidase-like amidase
1327	 44.65	0	1572971..1573774	+	267	27367791	-	VV2_1429	-	HAD superfamily hydrolase
1328	 42.96	-1	1573926..1574216	+	96	27367792	-	VV2_1430	-	hypothetical protein
1329	 41.89	-1	1574601..1575044	+	147	27367793	-	VV2_1431	-	transcriptional regulator
1330	 45.60	0	1575380..1576129	-	249	27367794	-	VV2_1432	-	membrane-associated phospholipid phosphatase
1331	 48.93	0	1576292..1577131	-	279	27367795	-	VV2_1433	-	phosphomethylpyrimidine kinase
1332	 43.72	-1	1577466..1578062	-	198	27367796	-	VV2_1434	-	hypothetical protein
1333	 38.99	-2	1578302..1578778	+	158	27367797	-	VV2_1435	-	hypothetical protein
1334	 43.70	-1	1585087..1585443	-	118	27367805	-	VV2_1451	-	hypothetical protein
1335	 44.93	0	1585549..1586436	-	295	27367806	-	VV2_1452	-	AraC-type DNA-binding domain-containing protein
1336	 46.00	0	1586580..1587779	+	399	27367807	-	VV2_1453	-	major facilitator superfamily permease
1337	 45.83	0	1587791..1588558	-	255	27367808	-	VV2_1454	-	ABC-type amino acid transport/signal transduction system
1338	 45.68	0	1588768..1589253	+	161	27367809	-	VV2_1455	-	hypothetical protein
1339	 47.64	0	1589502..1590389	+	295	27367810	-	VV2_1456	-	DMT family permease
1340	 46.39	0	1590548..1591504	+	318	27367811	-	VV2_1457	-	malate/lactate dehydrogenase
1341	 44.41	0	1591690..1592772	+	360	27367812	-	VV2_1458	-	spermidine/putrescine-binding periplasmic protein
1342	 48.01	0	1593149..1595206	+	685	27367813	-	VV2_1460	-	Outer membrane receptor for ferrienterochelin and colicins
1343	 49.48	0	1595260..1595742	+	160	27367814	-	VV2_1461	-	valyl-tRNA synthetase
1344	 48.85	0	1595739..1597658	+	639	27367815	-	VV2_1462	-	GGDEF domain-containing protein
1345	 47.57	0	1597765..1599042	+	425	27367816	-	VV2_1463	-	hypothetical protein
1346	 46.11	0	1599292..1599612	-	106	27367817	-	VV2_1464	-	hypothetical protein
1347	 47.59	0	1599715..1600605	-	296	27367818	-	VV2_1465	-	transcriptional regulator
1348	 50.07	0	1600873..1601619	+	248	27367819	-	VV2_1466	-	DMT family permease
1349	 48.06	0	1601622..1604501	-	959	27367820	-	VV2_1467	-	chemotactic transducer-related protein
1350	 48.98	0	1604694..1605134	+	146	27367821	-	VV2_1468	-	2-oxoglutarate dehydrogenase complex, dehydrogenase component
1351	 50.93	0	1605217..1605966	+	249	27367822	-	VV2_1469	-	putative hydrolase
1352	 43.28	-1	1606052..1606453	+	133	27367823	-	VV2_1470	-	soluble cytochrome b562
1353	 50.68	0	1606626..1607138	-	170	27367824	-	VV2_1471	-	Cu/Zn superoxide dismutase
1354	 43.04	-1	1607171..1607644	-	157	27367825	-	VV2_1472	-	AnkB protein
1355	 47.19	0	1607736..1609229	-	497	27367826	-	VV2_1473	-	catalase
1356	 47.88	0	1609621..1609950	+	109	27367827	-	VV2_1475	-	hypothetical protein
1357	 51.62	+1	1610058..1611473	+	471	27367828	-	VV2_1476	-	hypothetical protein
1358	 50.26	0	1611652..1612035	-	127	27367829	-	VV2_1477	-	lactoylglutathione lyase
1359	 50.00	0	1612035..1612946	-	303	27367830	-	VV2_1478	-	transcriptional regulator
1360	 50.79	0	1613369..1614508	+	379	27367831	-	VV2_1479	-	major facilitator superfamily permease
1361	 45.81	0	1614685..1616022	+	445	27367832	-	VV2_1480	-	transposase
1362	 50.00	0	1616073..1616420	-	115	27367833	-	VV2_1481	-	ATPase of the AAA+ class
1363	 51.68	+1	1616427..1618388	-	653	27367834	-	VV2_1482	-	regulatory P domain-containing protein
1364	 50.00	0	1618892..1620145	+	417	27367835	-	VV2_1483	-	phospholipase/lecithinase/hemolysin
1365	 51.01	0	1620420..1621613	+	397	27367836	-	VV2_1484	-	2-amino-3-ketobutyrate coenzyme A ligase
1366	 50.48	0	1621665..1622696	+	343	27367837	tdh	VV2_1485	-	L-threonine 3-dehydrogenase
1367	 43.36	-1	1622768..1623196	-	142	27367838	-	VV2_1486	-	hypothetical protein
1368	 36.50	-2	1623291..1623701	-	136	27367839	-	VV2_1487	-	hypothetical protein
1369	 48.04	0	1624093..1624602	-	169	27367840	-	VV2_1488	-	hypothetical protein
1370	 38.26	-2	1624679..1624942	-	87	27367841	-	VV2_1489	-	hypothetical protein
1371	 42.99	-1	1625180..1625914	-	244	27367842	-	VV2_1491	-	hypothetical protein
1372	 42.46	-1	1626223..1626507	+	94	27367843	-	VV2_1492	-	DNA-damage-inducible protein J
1373	 40.86	-2	1626504..1626782	+	92	27367844	-	VV2_1493	-	plasmid stabilization system protein protein
1374	 36.82	-2	1627218..1627475	-	85	27367845	-	VV2_1495	-	hypothetical protein
1375	 35.23	-2	1627485..1627748	-	87	27367846	-	VV2_1496	-	hypothetical protein
1376	 37.34	-2	1628272..1629918	-	548	27367847	-	VV2_1497	-	ATPase involved in DNA repair
1377	 47.40	0	1630809..1631270	-	153	27367848	-	VV2_1500	-	lipocalin
1378	 49.93	0	1631542..1632258	-	238	27367849	-	VV2_1501	-	Outer membrane protein V
1379	 49.25	0	1632485..1633615	-	376	27367850	-	VV2_1502	-	Zn-dependent hydrolase
1380	 48.23	0	1633728..1634660	+	310	27367851	-	VV2_1503	-	LysR family transcriptional regulator
1381	 49.81	0	1634774..1635568	-	264	27367852	-	VV2_1504	-	hypothetical protein
1382	 50.16	0	1635561..1637087	-	508	27367853	-	VV2_1505	-	hypothetical protein
1383	 43.03	-1	1637322..1637744	-	140	27367854	-	VV2_1506	-	hypothetical protein
1384	 44.73	0	1638181..1638768	+	195	27367855	-	VV2_1508	-	putative two-component response regulator
1385	 41.37	-1	1638852..1640207	-	451	27367856	-	VV2_1509	-	GGDEF family protein
1386	 41.94	-1	1640242..1640601	-	119	27367857	-	VV2_1510	-	response regulator
1387	 45.05	0	1640737..1641897	-	386	27367858	-	VV2_1511	-	response regulator VieA
1388	 44.17	-1	1641890..1645543	-	1217	27367859	-	VV2_1512	-	sensor kinase VieS
1389	 44.28	-1	1645904..1646305	-	133	27367860	-	VV2_1513	-	hypothetical protein
1390	 51.82	+1	1646569..1660533	+	4654	27367861	-	VV2_1514	-	autotransporter adhesin
1391	 51.44	+1	1660545..1662698	+	717	27367862	-	VV2_1515	-	toxin secretion ATP-binding protein
1392	 51.09	0	1662695..1664023	+	442	27367863	-	VV2_1516	-	HlyD family secretion protein
1393	 50.57	0	1664041..1665351	+	436	27367864	-	VV2_1517	-	agglutination protein
1394	 48.53	0	1665389..1665967	+	192	27367865	-	VV2_1518	-	Outer membrane protein, putative
1395	 46.86	0	1665995..1666903	+	302	27367866	-	VV2_1519	-	ABC-type phosphate transport system, periplasmic component
1396	 49.38	0	1667136..1667858	+	240	27367867	-	VV2_1520	-	carbonic anhydrase
1397	 47.19	0	1667987..1669090	-	367	27367868	-	VV2_1521	-	small-conductance mechanosensitive channel
1398	 43.97	-1	1669350..1669697	+	115	27367869	-	VV2_1522	-	transcriptional regulator protein
1399	 49.48	0	1669960..1670826	+	288	27367870	-	VV2_1523	-	methyl-accepting chemotaxis protein
1400	 49.58	0	1670823..1671536	+	237	27367871	-	VV2_1524	-	methyl-accepting chemotaxis protein
1401	 49.17	0	1671608..1671967	-	119	27367872	-	VV2_1525	-	hypothetical protein
47.71	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.