IslandPath Analysis: Vibrio vulnificus CMCP6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.71   STD DEV: 3.40
Vibrio vulnificus CMCP6 chromosome II, complete sequence - 1..1844853
1557 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1260	 49.83	0	1495527..1496975	-	482	27367724	-	VV2_1354	-	transcriptional regulator
1261	 50.66	0	1497069..1497905	+	278	27367725	-	VV2_1355	-	DMT family permease
1262	 49.59	0	1497963..1499303	-	446	27367726	-	VV2_1356	-	phosphotransferase system fructose-specific component IIB
1263	 40.36	-2	1499378..1499818	-	146	27367727	-	VV2_1357	-	phosphotransferase system mannitol
1264	 48.03	0	1500086..1500745	-	219	27367728	-	VV2_1358	-	phosphoserine phosphatase
1265	 49.16	0	1501008..1501304	+	98	27367729	-	VV2_1359	-	hypothetical protein
1266	 53.76	+1	1501598..1505797	+	1399	27367730	-	VV2_1360	-	NADPH-dependent glutamate synthase beta chain
1267	 51.35	+1	1505964..1508444	+	826	27367731	-	VV2_1361	-	Beta-galactosidase/beta-glucuronidase
1268	 38.02	-2	1508959..1509705	+	248	27367732	-	VV2_1363	-	transcriptional regulator
1269	 50.84	0	1509772..1510605	-	277	27367733	-	VV2_1364	-	purine nucleoside phosphorylase
1270	 49.94	0	1510743..1511615	+	290	27367734	-	VV2_1365	-	transcriptional regulator
1271	 47.94	0	1511685..1513820	-	711	27367735	-	VV2_1367	-	hypothetical protein
1272	 43.49	-1	1514230..1514613	+	127	27367736	-	VV2_1369	-	hypothetical protein
1273	 49.13	0	1514623..1516464	-	613	27367737	-	VV2_1370	-	cell division protein FtsI
1274	 49.94	0	1516980..1517822	+	280	27367738	-	VV2_1371	-	hypothetical protein
1275	 47.68	0	1517995..1518747	+	250	27367739	-	VV2_1372	-	nicotinamide mononucleotide transporter
1276	 50.75	0	1518744..1519472	+	242	27367740	-	VV2_1373	-	uridine phosphorylase
1277	 43.05	-1	1519660..1520256	-	198	27367741	-	VV2_1374	-	hypothetical protein
1278	 48.46	0	1520514..1521194	+	226	27367742	-	VV2_1376	-	cAMP-binding protein
1279	 46.87	0	1521566..1522459	+	297	27367743	-	VV2_1377	-	transcriptional regulator
1280	 54.55	+2	1522603..1522734	-	43	27367744	-	VV2_1378	-	DMT family permease
1281	 49.11	0	1522724..1523509	-	261	27367745	-	VV2_1379	-	DMT family permease
1282	 49.53	0	1523511..1524257	-	248	27367746	-	VV2_1380	-	hypothetical protein
1283	 48.40	0	1524275..1525489	-	404	27367747	-	VV2_1381	-	argininosuccinate synthase
1284	 50.16	0	1525594..1526508	+	304	27367748	-	VV2_1382	-	transcriptional regulator
1285	 50.11	0	1526622..1527926	-	434	27367749	-	VV2_1383	-	Na+/H+-dicarboxylate symporter
1286	 50.41	0	1528227..1529327	-	366	27367750	-	VV2_1385	-	hypothetical protein
1287	 52.33	+1	1529334..1530449	-	371	27367751	-	VV2_1386	-	Outer membrane protein/protective antigen OMA87
1288	 49.35	0	1530453..1531301	-	282	27367752	-	VV2_1387	-	hypothetical protein
1289	 45.87	0	1531503..1532108	+	201	27367753	-	VV2_1388	-	transcriptional regulator
1290	 42.54	-1	1532211..1532525	-	104	27367754	-	VV2_1389	-	hypothetical protein
1291	 49.83	0	1532945..1533817	+	290	27367755	-	VV2_1391	-	transcriptional regulator
1292	 48.58	0	1533950..1534795	+	281	27367756	-	VV2_1392	-	Zn-dependent hydrolase
1293	 51.87	+1	1534894..1535616	-	240	27367757	-	VV2_1393	-	nitroreductase A
1294	 51.11	0	1535779..1536909	+	376	161501856	rumB	VV2_1394	-	23S rRNA methyluridine methyltransferase
1295	 50.06	0	1536950..1537816	-	288	27367759	-	VV2_1395	-	taurine catabolism dioxygenase
1296	 44.44	0	1538031..1538786	+	251	27367760	-	VV2_1396	-	DNA-binding HTH domain-containing protein
1297	 49.88	0	1538964..1542632	+	1222	27367761	-	VV2_1397	-	hypothetical protein
1298	 48.57	0	1542837..1543046	+	69	27367762	-	VV2_1398	-	hypothetical protein
1299	 47.61	0	1543306..1545042	-	578	27367763	-	VV2_1399	-	hypothetical protein
1300	 49.68	0	1545347..1547194	-	615	27367764	-	VV2_1400	-	oligoendopeptidase F
1301	 50.84	0	1547326..1548759	-	477	27367765	-	VV2_1401	-	transcriptional regulator
1302	 52.54	+1	1548847..1549752	+	301	27367766	-	VV2_1402	-	DMT family permease
1303	 47.30	0	1549724..1550797	-	357	27367767	-	VV2_1403	-	GGDEF domain-containing protein
1304	 43.87	-1	1550919..1551269	+	116	27367768	-	VV2_1404	-	hypothetical protein
1305	 47.71	0	1551389..1552174	+	261	27367769	-	VV2_1405	-	ABC-type amino acid transport/signal transduction systems
1306	 49.82	0	1552254..1553885	-	543	27367770	-	VV2_1406	-	endonuclease I
1307	 49.07	0	1553242..1553457	+	71	27367771	-	VV2_1407	-	hypothetical protein
1308	 49.46	0	1554163..1556184	-	673	27367772	-	VV2_1408	-	glycosidase
1309	 49.20	0	1556429..1556863	-	144	161501855	-	VV2_1409	-	hypothetical protein
1310	 48.50	0	1557001..1558932	-	643	27367774	-	VV2_1410	-	phosphoglycerol transferase
1311	 47.73	0	1558943..1560595	-	550	27367775	-	VV2_1411	-	membrane-associated metal-dependent hydrolase
1312	 50.42	0	1560601..1560957	-	118	27367776	-	VV2_1412	-	diacylglycerol kinase
1313	 47.15	0	1561289..1562569	-	426	27367777	-	VV2_1413	-	Signal transduction histidine kinase
1314	 47.94	0	1562579..1563283	-	234	27367778	-	VV2_1414	-	response regulator
1315	 50.63	0	1563561..1564196	-	211	27367779	-	VV2_1416	-	putative NADH-flavin reductase
1316	 49.17	0	1564458..1565360	+	300	27367780	-	VV2_1417	-	transcriptional regulator
1317	 49.03	0	1565395..1566114	-	239	27367781	-	VV2_1418	-	Short-chain alcohol dehydrogenase of unknown specificity
1318	 49.67	0	1566252..1567169	+	305	27367782	-	VV2_1419	-	transcriptional regulator
1319	 45.58	0	1567156..1567506	-	116	27367783	-	VV2_1420	-	hypothetical protein
1320	 42.42	-1	1567636..1567932	-	98	27367784	-	VV2_1421	-	1,4-alpha-glucan branching enzyme
1321	 45.57	0	1568170..1568496	+	108	27367785	-	VV2_1423	-	hypothetical protein
1322	 44.28	-1	1568542..1569144	+	200	27367786	-	VV2_1424	-	Thiol-disulfide isomerase
1323	 48.03	0	1569277..1571175	+	632	27367787	-	VV2_1425	-	glutamate decarboxylase
1324	 51.45	+1	1571244..1571900	-	218	27367788	ribB	VV2_1426	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
1325	 53.62	+1	1571936..1572142	+	68	27367789	-	VV2_1427	-	hypothetical protein
1326	 45.56	0	1572335..1572874	+	179	27367790	-	VV2_1428	-	nicotinamidase-like amidase
1327	 44.65	0	1572971..1573774	+	267	27367791	-	VV2_1429	-	HAD superfamily hydrolase
1328	 42.96	-1	1573926..1574216	+	96	27367792	-	VV2_1430	-	hypothetical protein
1329	 41.89	-1	1574601..1575044	+	147	27367793	-	VV2_1431	-	transcriptional regulator
1330	 45.60	0	1575380..1576129	-	249	27367794	-	VV2_1432	-	membrane-associated phospholipid phosphatase
1331	 48.93	0	1576292..1577131	-	279	27367795	-	VV2_1433	-	phosphomethylpyrimidine kinase
1332	 43.72	-1	1577466..1578062	-	198	27367796	-	VV2_1434	-	hypothetical protein
1333	 38.99	-2	1578302..1578778	+	158	27367797	-	VV2_1435	-	hypothetical protein
1334	 43.70	-1	1585087..1585443	-	118	27367805	-	VV2_1451	-	hypothetical protein
1335	 44.93	0	1585549..1586436	-	295	27367806	-	VV2_1452	-	AraC-type DNA-binding domain-containing protein
1336	 46.00	0	1586580..1587779	+	399	27367807	-	VV2_1453	-	major facilitator superfamily permease
1337	 45.83	0	1587791..1588558	-	255	27367808	-	VV2_1454	-	ABC-type amino acid transport/signal transduction system
1338	 45.68	0	1588768..1589253	+	161	27367809	-	VV2_1455	-	hypothetical protein
1339	 47.64	0	1589502..1590389	+	295	27367810	-	VV2_1456	-	DMT family permease
1340	 46.39	0	1590548..1591504	+	318	27367811	-	VV2_1457	-	malate/lactate dehydrogenase
1341	 44.41	0	1591690..1592772	+	360	27367812	-	VV2_1458	-	spermidine/putrescine-binding periplasmic protein
1342	 48.01	0	1593149..1595206	+	685	27367813	-	VV2_1460	-	Outer membrane receptor for ferrienterochelin and colicins
1343	 49.48	0	1595260..1595742	+	160	27367814	-	VV2_1461	-	valyl-tRNA synthetase
1344	 48.85	0	1595739..1597658	+	639	27367815	-	VV2_1462	-	GGDEF domain-containing protein
1345	 47.57	0	1597765..1599042	+	425	27367816	-	VV2_1463	-	hypothetical protein
1346	 46.11	0	1599292..1599612	-	106	27367817	-	VV2_1464	-	hypothetical protein
1347	 47.59	0	1599715..1600605	-	296	27367818	-	VV2_1465	-	transcriptional regulator
1348	 50.07	0	1600873..1601619	+	248	27367819	-	VV2_1466	-	DMT family permease
1349	 48.06	0	1601622..1604501	-	959	27367820	-	VV2_1467	-	chemotactic transducer-related protein
1350	 48.98	0	1604694..1605134	+	146	27367821	-	VV2_1468	-	2-oxoglutarate dehydrogenase complex, dehydrogenase component
1351	 50.93	0	1605217..1605966	+	249	27367822	-	VV2_1469	-	putative hydrolase
1352	 43.28	-1	1606052..1606453	+	133	27367823	-	VV2_1470	-	soluble cytochrome b562
1353	 50.68	0	1606626..1607138	-	170	27367824	-	VV2_1471	-	Cu/Zn superoxide dismutase
1354	 43.04	-1	1607171..1607644	-	157	27367825	-	VV2_1472	-	AnkB protein
1355	 47.19	0	1607736..1609229	-	497	27367826	-	VV2_1473	-	catalase
1356	 47.88	0	1609621..1609950	+	109	27367827	-	VV2_1475	-	hypothetical protein
1357	 51.62	+1	1610058..1611473	+	471	27367828	-	VV2_1476	-	hypothetical protein
1358	 50.26	0	1611652..1612035	-	127	27367829	-	VV2_1477	-	lactoylglutathione lyase
1359	 50.00	0	1612035..1612946	-	303	27367830	-	VV2_1478	-	transcriptional regulator
47.71	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.