IslandPath Analysis: Vibrio vulnificus CMCP6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.71   STD DEV: 3.40
Vibrio vulnificus CMCP6 chromosome II, complete sequence - 1..1844853
1557 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1171	 51.44	+1	1377423..1378604	+	393	27367635	-	VV2_1258	-	hypothetical protein
1172	 44.99	0	1378713..1379381	-	222	27367636	-	VV2_1259	-	hypothetical protein
1173	 45.27	0	1379739..1382519	+	926	27367637	-	VV2_1260	-	hypothetical protein
1174	 51.74	+1	1382641..1383243	-	200	27367638	-	VV2_1261	-	phosphoserine phosphatase
1175	 50.15	0	1383458..1385080	+	540	27367639	-	VV2_1262	-	methyl-accepting chemotaxis protein
1176	 46.70	0	1385149..1385694	-	181	27367640	-	VV2_1263	-	hypothetical protein
1177	 43.72	-1	1385813..1386592	-	259	27367641	-	VV2_1264	-	EAL domain-containing protein
1178	 52.38	+1	1386870..1388234	+	454	27367642	-	VV2_1266	-	NAD-dependent aldehyde dehydrogenase
1179	 51.63	+1	1388388..1389245	+	285	27367643	-	VV2_1267	-	putative glutathione S-transferase YghU
1180	 48.79	0	1389398..1390723	-	441	27367644	-	VV2_1268	-	HD-GYP domain-containing protein
1181	 51.02	0	1390867..1392675	-	602	27367645	-	VV2_1269	-	Na+/phosphate symporter
1182	 48.78	0	1392874..1395612	+	912	27367646	-	VV2_1270	-	Zn-dependent peptidase
1183	 46.91	0	1395726..1396211	-	161	27367647	-	VV2_1271	-	lactoylglutathione lyase
1184	 49.89	0	1396399..1397274	+	291	27367648	-	VV2_1272	-	transcriptional regulator
1185	 48.67	0	1397303..1398169	-	288	27367649	-	VV2_1273	-	transcriptional regulator
1186	 49.26	0	1398615..1399700	-	361	27367650	-	VV2_1274	-	Ca2+/H+ antiporter
1187	 44.76	0	1399734..1400267	-	177	27367651	-	VV2_1275	-	hypothetical protein
1188	 50.59	0	1400754..1401518	+	254	27367652	-	VV2_1276	-	ABC-type amino acid transport/signal transduction system
1189	 51.90	+1	1401606..1402946	-	446	27367653	-	VV2_1277	-	Signal transduction histidine kinase
1190	 49.32	0	1403014..1403670	-	218	27367654	-	VV2_1278	-	response regulator
1191	 48.58	0	1403789..1404811	-	340	27367655	-	VV2_1279	-	GGDEF domain-containing protein
1192	 46.10	0	1404895..1405356	-	153	27367656	-	VV2_1280	-	hypothetical protein
1193	 53.58	+1	1405853..1407166	+	437	27367657	-	VV2_1281	-	maltoporin
1194	 51.04	0	1407499..1408503	+	334	27367658	-	VV2_1282	-	transcriptional regulator
1195	 52.29	+1	1408524..1409768	+	414	27367659	-	VV2_1283	-	ABC-type sugar transport system, periplasmic component
1196	 49.51	0	1409828..1410847	+	339	27367660	-	VV2_1284	-	ABC-type sugar transport system, permease component
1197	 51.70	+1	1410849..1411730	+	293	27367661	-	VV2_1286	-	ABC-type sugar transport system, permease component
1198	 52.30	+1	1411763..1413112	+	449	27367662	-	VV2_1287	-	Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase
1199	 53.01	+1	1413112..1414209	+	365	27367663	-	VV2_1288	-	ABC-type sugar transport system, ATPase component
1200	 49.27	0	1414376..1415398	+	340	27367664	-	VV2_1289	-	transcriptional regulator
1201	 51.68	+1	1415416..1416249	-	277	27367665	-	VV2_1290	-	hypothetical protein
1202	 48.53	0	1416674..1418311	+	545	27367666	-	VV2_1291	-	ABC-type dipeptide transport system, periplasmic component
1203	 52.51	+1	1418379..1419353	+	324	27367667	-	VV2_1292	-	ABC-type dipeptide/oligopeptide/nickel transport system, permease component
1204	 53.07	+1	1419362..1420354	+	330	27367668	-	VV2_1293	-	ABC-type dipeptide/oligopeptide/nickel transport system, permease component
1205	 52.94	+1	1420351..1421304	+	317	27367669	-	VV2_1294	-	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
1206	 53.90	+1	1421316..1422302	+	328	27367670	-	VV2_1295	-	ABC-type oligopeptide transport system, ATPase component
1207	 51.01	0	1422365..1425814	+	1149	27367671	-	VV2_1296	-	hypothetical protein
1208	 49.65	0	1426053..1427063	-	336	27367672	-	VV2_1297	-	transcriptional regulator
1209	 52.92	+1	1427476..1429323	+	615	27367673	-	VV2_1298	-	exo-beta-1,3-glucanase
1210	 52.25	+1	1429428..1431029	+	533	27367674	-	VV2_1300	-	Beta-glucanase/Beta-glucan synthetase
1211	 49.69	0	1431408..1432691	+	427	27367675	-	VV2_1301	-	maltoporin
1212	 48.97	0	1432859..1433728	-	289	27367676	-	VV2_1302	-	AraC-type DNA-binding domain-containing protein
1213	 42.86	-1	1433651..1433839	+	62	27367677	-	VV2_1303	-	hypothetical protein
1214	 55.10	+2	1433863..1436664	+	933	27367678	-	VV2_1304	-	Beta-glucosidase-related glycosidase
1215	 52.88	+1	1436926..1438158	+	410	27367679	-	VV2_1306	-	Na+-driven multidrug efflux pump
1216	 43.98	-1	1438319..1438816	+	165	27367680	-	VV2_1307	-	hypothetical protein
1217	 53.06	+1	1438827..1439936	+	369	27367681	-	VV2_1308	-	multidrug resistance efflux pump
1218	 50.95	0	1439926..1440924	+	332	27367682	-	VV2_1309	-	DMT family permease
1219	 46.39	0	1441191..1441481	+	96	27367683	-	VV2_1310	-	hypothetical protein
1220	 47.91	0	1441457..1442005	+	182	27367684	-	VV2_1311	-	histone acetyltransferase HPA2
1221	 48.85	0	1442099..1443097	-	332	27367685	-	VV2_1312	-	hypothetical protein
1222	 37.54	-2	1443651..1445051	+	466	27367686	-	VV2_1314	-	chromosome segregation ATPase
1223	 47.24	0	1445289..1445777	+	162	27367687	-	VV2_1315	-	hypothetical protein
1224	 46.76	0	1445774..1446205	+	143	27367688	-	VV2_1316	-	hypothetical protein
1225	 53.53	+1	1446375..1448072	-	565	27367689	-	VV2_1318	-	pseudouridylate synthase, 23S RNA-specific
1226	 52.73	+1	1448159..1449127	-	322	27367690	-	VV2_1319	-	GGDEF domain-containing protein
1227	 53.26	+1	1449259..1452360	-	1033	27367691	-	VV2_1320	-	cation/multidrug efflux pump
1228	 52.91	+1	1452357..1453679	-	440	27367692	-	VV2_1321	-	membrane-fusion protein
1229	 50.08	0	1453666..1454322	-	218	27367693	-	VV2_1322	-	transcriptional regulator
1230	 53.67	+1	1454446..1455453	-	335	27367694	-	VV2_1323	-	transcriptional regulator
1231	 50.79	0	1455635..1456642	-	335	27367695	mglC	VV2_1324	-	beta-methylgalactoside transporter inner membrane component
1232	 46.94	0	1456653..1458041	-	462	27367696	-	VV2_1325	-	galactose/methyl galaxtoside transporter ATP-binding protein
1233	 52.51	+1	1458267..1459241	-	324	27367697	-	VV2_1326	-	ABC-type sugar transport system, periplasmic component
1234	 53.47	+1	1459600..1462698	-	1032	161501857	lacZ	VV2_1327	-	beta-D-galactosidase
1235	 47.60	0	1462789..1463496	-	235	27367699	-	VV2_1328	-	hypothetical protein
1236	 50.08	0	1463734..1464975	-	413	27367700	-	VV2_1329	-	maltoporin
1237	 51.72	+1	1465809..1467929	+	706	27367701	-	VV2_1330	-	Alpha-galactosidase
1238	 49.05	0	1468293..1469666	+	457	27367702	-	VV2_1332	-	melibiose:sodium symporter
1239	 49.32	0	1469703..1469921	+	72	27367703	-	VV2_1333	-	hypothetical protein
1240	 50.48	0	1471043..1471777	+	244	27367704	-	VV2_1334	-	rRNA methylase
1241	 49.69	0	1471926..1472249	-	107	27367705	-	VV2_1335	-	ferredoxin
1242	 51.95	+1	1472538..1474154	+	538	27367706	-	VV2_1336	-	hypothetical protein
1243	 49.91	0	1474220..1476385	-	721	27367707	-	VV2_1337	-	Outer membrane receptor protein
1244	 47.65	0	1476529..1477401	-	290	27367708	-	VV2_1338	-	hypothetical protein
1245	 47.09	0	1477631..1478386	+	251	27367709	-	VV2_1339	-	hypothetical protein
1246	 38.37	-2	1478997..1479512	+	171	27367710	-	VV2_1340	-	hypothetical protein
1247	 34.99	-2	1479523..1480365	+	280	27367711	-	VV2_1341	-	Mg-dependent DNase
1248	 52.25	+1	1480410..1481942	-	510	27367712	-	VV2_1342	-	anaerobic nitric oxide reductase transcription regulator
1249	 47.54	0	1482146..1483630	+	494	27367713	-	VV2_1343	-	anaerobic nitric oxide reductase flavorubredoxin
1250	 54.22	+1	1483641..1484789	+	382	27367714	-	VV2_1344	-	nitric oxide reductase
1251	 52.85	+1	1484827..1485159	+	110	27367715	-	VV2_1345	-	hypothetical protein
1252	 48.21	0	1485236..1486405	-	389	27367716	-	VV2_1346	-	autotransporter adhesin
1253	 45.69	0	1486628..1487752	+	374	27367717	-	VV2_1347	-	DNA-binding HTH domain-containing protein
1254	 50.99	0	1487832..1489049	-	405	27367718	-	VV2_1348	-	phosphomannose isomerase
1255	 53.47	+1	1489158..1491059	-	633	27367719	-	VV2_1349	-	phosphotransferase system fructose-specific component IIB
1256	 47.14	0	1491476..1492315	+	279	27367720	-	VV2_1350	-	AraC-type DNA-binding domain-containing protein
1257	 50.64	0	1492307..1493086	-	259	27367721	-	VV2_1351	-	phosphotransferase system mannitol
1258	 49.67	0	1493095..1493394	-	99	27367722	-	VV2_1352	-	phosphotransferase system fructose-specific component IIB
1259	 52.20	+1	1493640..1495499	+	619	27367723	-	VV2_1353	-	phosphotransferase system, fructose-specific IIC component
1260	 49.83	0	1495527..1496975	-	482	27367724	-	VV2_1354	-	transcriptional regulator
1261	 50.66	0	1497069..1497905	+	278	27367725	-	VV2_1355	-	DMT family permease
1262	 49.59	0	1497963..1499303	-	446	27367726	-	VV2_1356	-	phosphotransferase system fructose-specific component IIB
1263	 40.36	-2	1499378..1499818	-	146	27367727	-	VV2_1357	-	phosphotransferase system mannitol
1264	 48.03	0	1500086..1500745	-	219	27367728	-	VV2_1358	-	phosphoserine phosphatase
1265	 49.16	0	1501008..1501304	+	98	27367729	-	VV2_1359	-	hypothetical protein
1266	 53.76	+1	1501598..1505797	+	1399	27367730	-	VV2_1360	-	NADPH-dependent glutamate synthase beta chain
1267	 51.35	+1	1505964..1508444	+	826	27367731	-	VV2_1361	-	Beta-galactosidase/beta-glucuronidase
1268	 38.02	-2	1508959..1509705	+	248	27367732	-	VV2_1363	-	transcriptional regulator
1269	 50.84	0	1509772..1510605	-	277	27367733	-	VV2_1364	-	purine nucleoside phosphorylase
1270	 49.94	0	1510743..1511615	+	290	27367734	-	VV2_1365	-	transcriptional regulator
47.71	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.