IslandPath Analysis: Vibrio vulnificus CMCP6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.71   STD DEV: 3.40
Vibrio vulnificus CMCP6 chromosome II, complete sequence - 1..1844853
1557 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
59	 49.85	0	62857..63843	+	328	27366522	rbsC	VV2_0063	-	ribose ABC transporter permease protein
60	 50.17	0	63919..64797	+	292	27366523	-	VV2_0064	-	D-ribose transporter subunit RbsB
61	 48.53	0	64953..65873	+	306	27366524	-	VV2_0065	-	ribokinase
62	 45.88	0	65894..66913	+	339	27366525	-	VV2_0066	-	transcriptional regulator
63	 39.81	-2	67144..67359	+	71	27366526	-	VV2_0067	-	hypothetical protein
64	 45.53	0	67792..68775	+	327	27366527	-	VV2_0068	-	FOG: CheY-like receiver
65	 45.30	0	68862..69914	-	350	27366528	-	VV2_0069	-	Fatty-acid desaturase
66	 47.54	0	70156..70704	+	182	27366529	-	VV2_0070	-	histone acetyltransferase HPA2
67	 47.41	0	70797..71741	-	314	27366530	rbgA	VV2_0071	-	ribosomal biogenesis GTPase
68	 49.04	0	72002..73561	-	519	27366531	-	VV2_0072	-	methyl-accepting chemotaxis protein
69	 43.11	-1	73768..74688	+	306	27366532	-	VV2_0073	-	anti-anti-sigma regulatory factor
70	 46.89	0	74691..75044	+	117	27366533	-	VV2_0074	-	anti-anti-sigma regulatory factor
71	 48.66	0	75070..75480	+	136	27366534	-	VV2_0075	-	anti-sigma regulatory factor
72	 45.13	0	75483..76067	+	194	27366535	-	VV2_0076	-	Serine phosphatase RsbU, regulator of sigma subunit
73	 46.51	0	76060..79278	+	1072	27366536	-	VV2_0077	-	FOG: CheY-like receiver
74	 46.79	0	79262..80398	+	378	27366537	-	VV2_0078	-	response regulator
75	 47.27	0	80545..81678	+	377	27366538	-	VV2_0079	-	DNA repair exonuclease
76	 48.08	0	81687..84752	+	1021	27366539	-	VV2_0080	-	ATPase involved in DNA repair
77	 45.57	0	85287..89036	+	1249	27366540	-	VV2_0082	-	hypothetical protein
78	 39.23	-2	89575..90405	+	276	27366541	-	VV2_0083	-	transcriptional regulator
79	 40.55	-2	91049..91339	+	96	27366542	-	VV2_0084	-	Flp pilus assembly protein
80	 37.97	-2	91465..92175	+	236	27366543	-	VV2_0085	-	hypothetical protein
81	 43.40	-1	92193..93503	+	436	27366544	-	VV2_0086	-	Flp pilus assembly protein
82	 40.10	-2	93581..93964	+	127	27366545	-	VV2_0087	-	ATPase with chaperone activity
83	 42.06	-1	93964..95166	+	400	27366546	-	VV2_0088	-	ATPase involved in chromosome partitioning
84	 47.16	0	95163..96428	+	421	27366547	-	VV2_0089	-	Flp pilus assembly protein
85	 40.87	-2	96428..97342	+	304	27366548	-	VV2_0090	-	Flp pilus assembly protein TadB
86	 39.66	-2	97807..98217	+	136	27366549	-	VV2_0091	-	Flp pilus assembly protein TadC
87	 42.97	-1	98249..99358	+	369	27366550	-	VV2_0092	-	Flp pilus assembly protein TadD
88	 41.48	-1	99355..99882	+	175	27366551	-	VV2_0093	-	hypothetical protein
89	 43.30	-1	99872..100453	+	193	27366552	-	VV2_0094	-	hypothetical protein
90	 43.79	-1	100455..101735	+	426	27366553	-	VV2_0095	-	Flp pilus assembly protein TadG
91	 44.27	-1	101737..102303	+	188	27366554	-	VV2_0096	-	Outer membrane protein
92	 44.36	0	102542..102922	-	126	27366555	-	VV2_0097	-	pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase component
93	 45.95	0	103087..104013	+	308	27366556	-	VV2_0099	-	hypothetical protein
94	 40.78	-2	104618..104872	+	84	27366557	-	VV2_0100	-	hypothetical protein
95	 44.99	0	104938..105735	-	265	27366558	-	VV2_0101	-	lipase
96	 50.21	0	105844..107247	-	467	27366559	-	VV2_0102	-	di- and tricarboxylate transporter
97	 47.56	0	107525..109084	+	519	27366560	-	VV2_0103	-	Signal transduction histidine kinase regulating citrate/malate metabolism
98	 48.89	0	109087..109761	+	224	27366561	-	VV2_0104	-	response regulator of citrate/malate metabolism
99	 46.30	0	109922..110515	+	197	27366562	-	VV2_0105	-	acetyltransferase
100	 44.96	0	110576..111031	-	151	27366563	-	VV2_0106	-	NTP pyrophosphohydrolase including oxidative damage repair enzyme
101	 46.67	0	111047..111346	-	99	27366564	-	VV2_0107	-	pyrophosphatase
102	 46.38	0	111601..111876	+	91	27366565	-	VV2_0108	-	hypothetical protein
103	 50.28	0	112203..112379	+	58	27366566	-	VV2_0109	-	hypothetical protein
104	 47.44	0	112455..113312	+	285	27366567	-	VV2_0110	-	ABC-type enterochelin transport system, permease component
105	 45.55	0	113323..114255	+	310	27366568	-	VV2_0111	-	ABC-type enterochelin transport system, permease component
106	 46.16	0	114263..115018	+	251	27366569	-	VV2_0112	-	ABC-type enterochelin transport system, ATPase component
107	 43.54	-1	115069..115401	-	110	27366570	-	VV2_0113	-	transcriptional regulator
108	 43.78	-1	115641..115889	-	82	27366571	-	VV2_0115	-	hypothetical protein
109	 39.70	-2	116236..116502	+	88	27366572	-	VV2_0116	-	hypothetical protein
110	 50.24	0	116597..117856	-	419	27366573	-	VV2_0117	-	hydroxymethylglutaryl-CoA reductase
111	 43.88	-1	117936..118229	-	97	27366574	-	VV2_0118	-	hypothetical protein
112	 38.81	-2	118325..118543	-	72	27366575	-	VV2_0119	-	hypothetical protein
113	 46.08	0	118566..118667	+	33	27366576	-	VV2_0120	-	hypothetical protein
114	 46.80	0	118707..120860	-	717	27366577	-	VV2_0121	-	hypothetical protein
115	 47.47	0	121069..123141	+	690	27366578	helD	VV2_0122	-	DNA helicase IV
116	 46.49	0	123270..123725	-	151	27366579	mgsA	VV2_0123	-	methylglyoxal synthase
117	 47.55	0	123782..124639	-	285	27366580	-	VV2_0124	-	periplasmic sensory protein associated with the TorRS two-component regulatory system
118	 47.27	0	124906..127818	+	970	27366581	-	VV2_0125	-	FOG: CheY-like receiver
119	 44.62	0	127898..128083	-	61	27366582	-	VV2_0126	-	hypothetical protein
120	 46.63	0	128110..130095	-	661	27366583	-	VV2_0127	-	Fatty acid cis/trans isomerase
121	 50.59	0	130044..130466	-	140	27366584	-	VV2_0128	-	Type IIA topoisomerase, B subunit
122	 45.08	0	131132..132229	+	365	27366585	-	VV2_0129	-	chromosome segregation ATPase
123	 47.46	0	132308..134119	+	603	27366586	-	VV2_0130	-	hypothetical protein
124	 46.42	0	134436..134993	-	185	27366587	-	VV2_0131	-	nitrate/TMAO reductase
125	 45.51	0	135020..135643	-	207	27366588	-	VV2_0132	-	cytochrome c553
126	 49.29	0	136358..138544	+	728	27366589	-	VV2_0133	-	decaheme cytochrome c related protein
127	 48.05	0	138598..139569	+	323	27366590	-	VV2_0134	-	nitrate/TMAO reductase
128	 48.66	0	139580..141562	+	660	27366591	-	VV2_0135	-	hypothetical protein
129	 47.39	0	141685..143064	-	459	161501867	-	VV2_0136	-	ATP-dependent RNA helicase DbpA
130	 47.97	0	143341..146940	+	1199	27366593	-	VV2_0137	-	Signal transduction histidine kinase
131	 46.97	0	146944..148710	+	588	27366594	-	VV2_0138	-	EAL domain-containing protein
132	 43.23	-1	148712..150379	+	555	27366595	-	VV2_0139	-	response regulator
133	 43.16	-1	150536..150769	+	77	27366596	-	VV2_0140	-	hypothetical protein
134	 45.80	0	150876..152768	-	630	27366597	-	VV2_0141	-	signal transduction protein
135	 47.06	0	153606..157094	+	1162	27366598	-	VV2_0142	-	Ig-like domain-containing surface protein
136	 42.63	-1	157184..158011	-	275	27366599	-	VV2_0143	-	ABC-type phosphate transport system, periplasmic component
137	 44.13	-1	158151..158576	+	141	27366600	-	VV2_0144	-	hypothetical protein
138	 44.21	-1	158632..159357	-	241	27366601	-	VV2_0145	-	AraC-type DNA-binding domain-containing protein
139	 46.97	0	159574..161568	-	664	27366602	-	VV2_0146	-	exoribonuclease II
140	 48.75	0	161946..163871	+	641	27366603	-	VV2_0147	-	superfamily II DNA/RNA helicase
141	 47.99	0	164213..165406	+	397	27366604	-	VV2_0148	-	acetate kinase
142	 49.04	0	165538..167103	-	521	27366605	-	VV2_0149	-	arylsulfatase A
143	 47.32	0	167375..168232	-	285	27366606	-	VV2_0150	-	transcriptional regulator
144	 48.02	0	168367..169884	+	505	27366607	-	VV2_0151	-	arylsulfatase A
145	 47.28	0	169981..171285	+	434	27366608	-	VV2_0152	-	arylsulfatase regulator
146	 44.44	0	171391..171498	+	35	27366609	-	VV2_0153	-	hypothetical protein
147	 53.83	+1	171492..172379	+	295	27366610	-	VV2_0154	-	MoxR-like ATPase
148	 51.71	+1	172391..173353	+	320	27366611	-	VV2_0155	-	hypothetical protein
149	 48.55	0	173354..173905	+	183	27366612	-	VV2_0156	-	hypothetical protein
150	 52.06	+1	173919..174986	+	355	27366613	-	VV2_0157	-	von Willebrand factor type A (vWA) domain-containing protein
151	 48.62	0	174979..176718	+	579	27366614	-	VV2_0158	-	TPR repeat-containing protein
152	 51.53	+1	176715..178055	+	446	27366615	-	VV2_0159	-	hypothetical protein
153	 49.23	0	178290..179195	+	301	27366616	-	VV2_0160	-	transcriptional regulator
154	 49.91	0	179275..180975	-	566	27366617	-	VV2_0161	-	hypothetical protein
155	 51.40	+1	181000..181785	-	261	27366618	-	VV2_0162	-	hypothetical protein
156	 48.60	0	181952..183274	+	440	27366619	-	VV2_0163	-	arylsulfatase regulator
157	 50.89	0	183295..184365	+	356	27366620	-	VV2_0164	-	TPR repeat-containing protein
158	 48.43	0	184362..185990	-	542	27366621	-	VV2_0165	-	hypothetical protein
47.71	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.