IslandPathversion 1.0

IslandPath Analysis: Vibrio fischeri ES114



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.27 STD DEV: 3.84
Vibrio fischeri ES114 chromosome II, complete sequence - 1..1330333
1175 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
936	 35.75	0	1054291..1055076	-	261	59714114	-	VF_A0931	-	transcriptional regulatory protein, AraC-like protein
937	 40.27	0	1055100..1055618	-	172	59714115	ybhB	VF_A0932	-	kinase inhibitor
938	 34.65	0	1055758..1056213	-	151	59714116	-	VF_A0933	-	hypothetical protein
939	 39.23	0	1056449..1056838	+	129	59714117	ygbA	VF_A0934	-	hypothetical protein
940	 38.10	0	1056835..1057716	+	293	59714118	-	VF_A0935	-	LysR family transcriptional regulator
941	 33.94	0	1057732..1058562	+	276	59714119	-	VF_A0936	-	lipase/acylhydrolase family protein
942	 39.60	0	1058618..1059271	-	217	59714120	-	VF_A0937	-	phosphoglycolate phosphatase
943	 38.54	0	1059425..1060039	-	204	59714121	-	VF_A0938	-	threonine efflux protein
944	 38.48	0	1060117..1060641	+	174	59714122	-	VF_A0939	-	hypothetical protein
945	 43.48	+1	1060717..1062450	-	577	59714123	fruA	VF_A0940	-	fused fructose-specific PTS enzymes: iibcomponent/IIC components
946	 41.49	+1	1062481..1063461	-	326	59714124	fruK	VF_A0941	-	fructose-1-phosphate kinase
947	 41.78	+1	1063465..1064601	-	378	59714125	fruB	VF_A0942	-	bifunctional fructose-specific PTS IIA/HPr protein
948	 38.30	0	1064787..1064927	-	46	59714127	-	VF_A0944	-	hypothetical protein
949	 39.47	0	1064887..1065864	+	325	59714126	fruR	VF_A0943	-	DNA-binding transcriptional regulator FruR
950	 34.29	0	1065909..1066535	-	208	59714128	-	VF_A0945	-	putative lipoprotein
951	 35.36	0	1066541..1066984	-	147	59714129	-	VF_A0946	-	hypothetical protein
952	 37.35	0	1067221..1067469	-	82	59714130	-	VF_A0947	-	hypothetical protein
953	 36.23	0	1067512..1067856	-	114	59714131	-	VF_A0948	-	hypothetical protein
954	 34.79	0	1067862..1068479	-	205	59714132	-	VF_A0949	-	putative lipoprotein
955	 31.29	-1	1068476..1069750	-	424	59714133	-	VF_A0950	-	hypothetical protein
956	 35.63	0	1069931..1070278	-	115	59714134	-	VF_A0951	-	hypothetical protein
957	 35.08	0	1070275..1071075	-	266	59714135	-	VF_A0952	-	hypothetical protein
958	 39.52	0	1071080..1073116	-	678	59714136	-	VF_A0953	-	VgrG protein
959	 42.00	+1	1073259..1073777	-	172	59714137	-	VF_A0954	-	hemolysin co-regulated protein
960	 35.94	0	1074016..1074666	-	216	59714138	-	VF_A0955	-	SAM-dependent methyltransferase
961	 39.78	0	1074755..1075576	+	273	59714139	yidA	VF_A0956	-	hydrolase
962	 39.03	0	1075667..1076965	-	432	59714140	yihN	VF_A0957	-	transporter
963	 36.02	0	1077007..1077750	-	247	59714141	glpQ	VF_A0958	-	glycerophosphoryl diester phosphodiesterase GlpQ (UgpQ)
964	 34.04	0	1078131..1080101	-	656	59714142	mifB	VF_A0959	-	diguanylate cyclase (GGDEF), inhibitor of flagellar motility
965	 36.66	0	1080098..1081120	-	340	59714143	mifC	VF_A0960	-	periplasmic protein that regulates MifA/B activity
966	 40.01	0	1081519..1083045	+	508	59714144	yjjI	VF_A0961	-	hypothetical protein
967	 38.93	0	1083054..1083965	+	303	59714145	yjjW	VF_A0962	-	pyruvate formate lyase activating enzyme
968	 35.69	0	1084109..1085041	-	310	59714146	-	VF_A0963	-	LysR family transcriptional regulator
969	 39.30	0	1085339..1085908	+	189	59714147	-	VF_A0964	-	integral membrane protein
970	 38.35	0	1086011..1086808	+	265	59714148	nfsA	VF_A0965	-	nitroreductase A
971	 41.28	+1	1086873..1088243	+	456	59714149	-	VF_A0966	-	L-serine ammonia-lyase
972	 38.57	0	1088475..1089695	+	406	59714150	-	VF_A0967	-	nucleoside permease NupC
973	 37.92	0	1089718..1090437	+	239	59714151	deoD3	VF_A0968	-	purine nucleoside phosphorylase deoD-type; PNP
974	 38.98	0	1090495..1091841	+	448	59714152	guaD	VF_A0969	-	guanine deaminase
975	 32.86	-1	1091979..1092617	+	212	59714153	-	VF_A0970	-	hypothetical protein
976	 37.95	0	1092630..1093409	-	259	59714154	fecE	VF_A0971	-	vitamin B12 transport ATP-binding protein BtuD
977	 39.87	0	1093406..1094446	-	346	59714155	fecD	VF_A0972	-	KpLE2 phage-like element; iron-dicitrate transporter subunit
978	 37.69	0	1094446..1095363	-	305	59714156	-	VF_A0973	-	ABC transporter, periplasmic component
979	 31.01	-1	1095484..1095612	+	42	59714157	-	VF_A0974	-	hypothetical protein
980	 38.36	0	1095602..1096138	+	178	59714158	-	VF_A0975	-	adenosyltransferase
981	 32.39	-1	1096372..1097964	+	530	59714159	-	VF_A0976	-	GGDEF domain-containing protein
982	 38.38	0	1097990..1099198	-	402	59714160	ynfM	VF_A0977	-	transporter
983	 38.51	0	1099285..1100154	+	289	59714161	-	VF_A0978	-	LysR family transcriptional regulator
984	 35.78	0	1100366..1100977	+	203	59714162	-	VF_A0979	-	hypothetical protein
985	 30.73	-1	1101283..1101666	+	127	59714163	-	VF_A0980	-	hypothetical protein
986	 30.40	-1	1101705..1101977	-	90	59714164	-	VF_A0981	-	hypothetical protein
987	 36.74	0	1101998..1102849	-	283	59714165	-	VF_A0982	-	hypothetical protein
988	 28.42	-2	1102865..1103413	-	182	59714166	-	VF_A0983	-	hypothetical protein
989	 28.26	-2	1103475..1104932	+	485	59714167	yfhD	VF_A0984	-	transglycosylase
990	 25.78	-2	1104944..1106161	+	405	59714168	-	VF_A0985	-	putative lipoprotein
991	 37.11	0	1106235..1106816	-	193	59714169	-	VF_A0986	-	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme
992	 40.55	0	1106806..1107456	-	216	59714170	-	VF_A0987	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
993	 40.29	0	1107446..1108408	-	320	59714171	kdgK	VF_A0988	-	ketodeoxygluconokinase
994	 39.88	0	1108505..1109359	-	284	59714172	kbaY	VF_A0989	-	tagatose-bisphosphate aldolase
995	 41.34	+1	1109616..1112264	-	882	59714173	-	VF_A0990	-	trimethylamine-N-oxide reductase
996	 37.29	0	1112476..1113993	-	505	59714174	-	VF_A0991	-	hypothetical protein
997	 40.64	0	1114064..1115677	-	537	59714175	ydeN	VF_A0992	-	hypothetical protein
998	 38.04	0	1115718..1116950	-	410	59714176	-	VF_A0993	-	arylsulfatase regulator (Fe-S oxidoreductase)
999	 37.19	0	1117171..1119579	+	802	59714177	-	VF_A0994	-	hyaluronate lyase precursor
1000	 34.06	0	1119734..1120564	+	276	59714178	-	VF_A0995	-	high-affinity iron permease
1001	 41.24	+1	1120650..1121699	-	349	59714179	-	VF_A0996	-	hypothetical protein
1002	 42.20	+1	1121725..1122480	-	251	59714180	kduD	VF_A0997	-	2-deoxy-D-gluconate 3-dehydrogenase
1003	 40.91	0	1122550..1123380	-	276	59714181	kduI	VF_A0998	-	5-keto-4-deoxyuronate isomerase
1004	 43.39	+1	1123482..1124624	-	380	59714182	nagA3	VF_A0999	-	N-acetylglucosamine-6-phosphate deacetylase
1005	 38.81	0	1124626..1125063	-	145	59714183	-	VF_A1000	-	PTS system, N-acetylgalactosamine-specific IIA component
1006	 40.20	0	1125152..1126069	-	305	59714184	agaD	VF_A1001	-	N-acetylgalactosamine-specific enzyme IID component of PTS
1007	 42.02	+1	1126059..1126829	-	256	59714185	agaC	VF_A1002	-	PTS system, N-acetylgalactosamine-specific IIC component
1008	 40.92	0	1126840..1127340	-	166	59714186	agaV	VF_A1003	-	N-acetylgalactosamine-specific enzyme IIB component of PTS
1009	 38.12	0	1127355..1128524	-	389	59714187	agaS	VF_A1004	-	tagatose-6-phosphate ketose/aldose isomerase
1010	 41.32	+1	1128521..1129822	-	433	59714188	kbaZ	VF_A1005	-	tagatose 6-phosphate aldolase 1, kbaZ subunit
1011	 40.41	0	1129870..1130646	-	258	59714189	agaR	VF_A1006	-	DNA-binding transcriptional dual regulator
1012	 39.88	0	1131057..1132613	+	518	59714190	yidJ	VF_A1007	-	sulfatase/phosphatase
1013	 37.17	0	1132693..1133421	+	242	172087822	-	VF_A1008	-	hypothetical protein
1014	 41.94	+1	1133541..1136201	-	886	59714193	-	VF_A1010	-	beta-hexosaminidase
1015	 35.83	0	1136705..1137184	+	159	59714194	ycdZ	VF_A1011	-	inner membrane protein
1016	 34.56	0	1137803..1138702	-	299	59714195	ydeH	VF_A1012	-	two component response regulator protein
1017	 31.52	-1	1138869..1139198	+	109	59714196	-	VF_A1013	-	hypothetical protein
1018	 28.65	-2	1139269..1140849	-	526	59714197	-	VF_A1014	-	EAL domain-containing protein
1019	 32.43	-1	1140896..1141780	-	294	59714198	rpoQ	VF_A1015	-	sigma-Q factor RpoQ, quorum-sensing regulated RpoS-like sigma subunit
1020	 31.06	-1	1142230..1144824	+	864	59714199	-	VF_A1016	-	two component sensory histidine kinase
1021	 31.30	-1	1144834..1146552	+	572	59714200	-	VF_A1017	-	two component response regulator
1022	 37.30	0	1146609..1147112	-	167	59714201	-	VF_A1018	-	putative lipoprotein
1023	 38.20	0	1147075..1149189	-	704	59714202	-	VF_A1019	-	putative cytoplasmic protein
1024	 35.53	0	1149604..1149921	+	105	59714203	sypA	VF_A1020	-	putative sulphate transporter, anti-sigma factor antagonist
1025	 40.24	0	1149970..1150794	+	274	59714204	sypB	VF_A1021	-	outer membrane protein
1026	 40.58	0	1150799..1152910	+	703	59714205	sypC	VF_A1022	-	periplasmic protein involved in polysaccharide export
1027	 35.17	0	1152910..1153617	+	235	59714206	sypD	VF_A1023	-	ATPase involved in chromosome partitioning
1028	 36.89	0	1153620..1155137	+	505	59714207	sypE	VF_A1024	-	two-component response regulator, sigma factor PP2C-like phosphatase
1029	 35.03	0	1155165..1157465	+	766	59714208	sypF	VF_A1025	-	two-component hybrid sensor histidine kinase
1030	 40.45	0	1157508..1159010	+	500	59714209	sypG	VF_A1026	-	sigma-54 dependent transcriptional regulator
1031	 38.25	0	1158994..1160010	+	338	59714210	sypH	VF_A1027	-	glycosyl transferases group 1
1032	 37.49	0	1160171..1161445	+	424	59714211	sypI	VF_A1028	-	glycosyl transferases group 1
1033	 36.00	0	1161438..1162601	+	387	59714212	sypJ	VF_A1029	-	glycosyl transferases group 1
1034	 35.69	0	1162598..1164040	+	480	59714213	sypK	VF_A1030	-	oligosaccharide translocase
1035	 38.17	0	1164037..1165422	+	461	59714214	sypL	VF_A1031	-	polysaccharide ligase
37.27	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.