IslandPathversion 1.0

IslandPath Analysis: Vibrio fischeri ES114



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.27 STD DEV: 3.84
Vibrio fischeri ES114 chromosome II, complete sequence - 1..1330333
1175 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
907	 39.22	0	1024004..1025056	+	350	172087820	-	VF_A1192	-	hypothetical protein
908	 37.78	0	1025049..1026824	+	591	59714087	-	VF_A0904	-	transporter
909	 34.70	0	1026824..1028065	+	413	59714088	-	VF_A0905	-	hypothetical protein
910	 37.58	0	1028288..1029442	+	384	59714089	-	VF_A0906	-	acriflavin resistance periplasmic protein
911	 39.76	0	1029464..1032577	+	1037	59714090	-	VF_A0907	-	acriflavin resistance plasma membrane protein
912	 37.43	0	1032676..1033431	+	251	59714091	-	VF_A0908	-	putative lipoprotein
913	 32.58	-1	1033488..1034285	-	265	59714092	-	VF_A0909	-	hypothetical protein
914	 33.15	-1	1034434..1034991	-	185	59714093	-	VF_A0910	-	hypothetical protein
915	 35.42	0	1035102..1036010	+	302	59714094	-	VF_A0911	-	LysR family transcriptional regulator
916	 34.48	0	1036014..1036274	-	86	172087821	-	VF_A1193	-	hypothetical protein
917	 35.77	0	1036450..1037229	+	259	59714095	-	VF_A0912	-	ABC transporter ATP-binding protein
918	 35.28	0	1037229..1038101	+	290	59714096	-	VF_A0913	-	hypothetical protein
919	 39.68	0	1038152..1039396	-	414	59714097	ytfL	VF_A0914	-	inner membrane protein
920	 35.87	0	1039639..1040190	-	183	59714098	-	VF_A0915	-	acetyltransferase
921	 38.37	0	1040298..1041668	-	456	59714099	-	VF_A0916	-	multidrug efflux pump VmrA
922	 38.51	0	1041873..1042316	+	147	59714100	-	VF_A0917	-	deoxycytidylate deaminase
923	 31.93	-1	1042357..1043067	-	236	59714101	luxG	VF_A0918	-	FMN reductase
924	 34.57	0	1043077..1044207	-	376	59714102	luxE	VF_A0919	-	long-chain-fatty-acid ligase LuxE
925	 33.13	-1	1044286..1045266	-	326	59714103	luxB	VF_A0920	-	luciferase beta chain LuxB
926	 38.58	0	1045277..1046344	-	355	59714104	luxA	VF_A0921	-	luciferase alpha chain LuxA
927	 36.90	0	1046367..1047290	-	307	59714105	luxD	VF_A0922	-	acyl transferase
928	 35.42	0	1047306..1048745	-	479	59714106	luxC	VF_A0923	-	acyl-CoA reductase LuxC
929	 34.38	0	1048783..1049355	-	190	59714107	luxI	VF_A0924	-	3-oxo-C6-HSL autoinducer synthesis protein LuxI
930	 30.41	-1	1049571..1050323	+	250	59714108	luxR	VF_A0925	-	autoinducer-binding transcriptional activator protein LuxR
931	 37.08	0	1050365..1051165	-	266	59714109	-	VF_A0926	-	hypothetical protein
932	 30.77	-1	1051347..1051541	-	64	59714110	-	VF_A0927	-	hypothetical protein
933	 42.01	+1	1051848..1052585	+	245	59714111	yjiH	VF_A0928	-	inner membrane protein
934	 41.24	+1	1052585..1053052	+	155	59714112	yjiG	VF_A0929	-	hypothetical protein
935	 44.27	+1	1053062..1054186	+	374	59714113	-	VF_A0930	-	carboxypeptidase G2 precursor
936	 35.75	0	1054291..1055076	-	261	59714114	-	VF_A0931	-	transcriptional regulatory protein, AraC-like protein
937	 40.27	0	1055100..1055618	-	172	59714115	ybhB	VF_A0932	-	kinase inhibitor
938	 34.65	0	1055758..1056213	-	151	59714116	-	VF_A0933	-	hypothetical protein
939	 39.23	0	1056449..1056838	+	129	59714117	ygbA	VF_A0934	-	hypothetical protein
940	 38.10	0	1056835..1057716	+	293	59714118	-	VF_A0935	-	LysR family transcriptional regulator
941	 33.94	0	1057732..1058562	+	276	59714119	-	VF_A0936	-	lipase/acylhydrolase family protein
942	 39.60	0	1058618..1059271	-	217	59714120	-	VF_A0937	-	phosphoglycolate phosphatase
943	 38.54	0	1059425..1060039	-	204	59714121	-	VF_A0938	-	threonine efflux protein
944	 38.48	0	1060117..1060641	+	174	59714122	-	VF_A0939	-	hypothetical protein
945	 43.48	+1	1060717..1062450	-	577	59714123	fruA	VF_A0940	-	fused fructose-specific PTS enzymes: iibcomponent/IIC components
946	 41.49	+1	1062481..1063461	-	326	59714124	fruK	VF_A0941	-	fructose-1-phosphate kinase
947	 41.78	+1	1063465..1064601	-	378	59714125	fruB	VF_A0942	-	bifunctional fructose-specific PTS IIA/HPr protein
948	 38.30	0	1064787..1064927	-	46	59714127	-	VF_A0944	-	hypothetical protein
949	 39.47	0	1064887..1065864	+	325	59714126	fruR	VF_A0943	-	DNA-binding transcriptional regulator FruR
950	 34.29	0	1065909..1066535	-	208	59714128	-	VF_A0945	-	putative lipoprotein
951	 35.36	0	1066541..1066984	-	147	59714129	-	VF_A0946	-	hypothetical protein
952	 37.35	0	1067221..1067469	-	82	59714130	-	VF_A0947	-	hypothetical protein
953	 36.23	0	1067512..1067856	-	114	59714131	-	VF_A0948	-	hypothetical protein
954	 34.79	0	1067862..1068479	-	205	59714132	-	VF_A0949	-	putative lipoprotein
955	 31.29	-1	1068476..1069750	-	424	59714133	-	VF_A0950	-	hypothetical protein
956	 35.63	0	1069931..1070278	-	115	59714134	-	VF_A0951	-	hypothetical protein
957	 35.08	0	1070275..1071075	-	266	59714135	-	VF_A0952	-	hypothetical protein
958	 39.52	0	1071080..1073116	-	678	59714136	-	VF_A0953	-	VgrG protein
959	 42.00	+1	1073259..1073777	-	172	59714137	-	VF_A0954	-	hemolysin co-regulated protein
960	 35.94	0	1074016..1074666	-	216	59714138	-	VF_A0955	-	SAM-dependent methyltransferase
961	 39.78	0	1074755..1075576	+	273	59714139	yidA	VF_A0956	-	hydrolase
962	 39.03	0	1075667..1076965	-	432	59714140	yihN	VF_A0957	-	transporter
963	 36.02	0	1077007..1077750	-	247	59714141	glpQ	VF_A0958	-	glycerophosphoryl diester phosphodiesterase GlpQ (UgpQ)
964	 34.04	0	1078131..1080101	-	656	59714142	mifB	VF_A0959	-	diguanylate cyclase (GGDEF), inhibitor of flagellar motility
965	 36.66	0	1080098..1081120	-	340	59714143	mifC	VF_A0960	-	periplasmic protein that regulates MifA/B activity
966	 40.01	0	1081519..1083045	+	508	59714144	yjjI	VF_A0961	-	hypothetical protein
967	 38.93	0	1083054..1083965	+	303	59714145	yjjW	VF_A0962	-	pyruvate formate lyase activating enzyme
968	 35.69	0	1084109..1085041	-	310	59714146	-	VF_A0963	-	LysR family transcriptional regulator
969	 39.30	0	1085339..1085908	+	189	59714147	-	VF_A0964	-	integral membrane protein
970	 38.35	0	1086011..1086808	+	265	59714148	nfsA	VF_A0965	-	nitroreductase A
971	 41.28	+1	1086873..1088243	+	456	59714149	-	VF_A0966	-	L-serine ammonia-lyase
972	 38.57	0	1088475..1089695	+	406	59714150	-	VF_A0967	-	nucleoside permease NupC
973	 37.92	0	1089718..1090437	+	239	59714151	deoD3	VF_A0968	-	purine nucleoside phosphorylase deoD-type; PNP
974	 38.98	0	1090495..1091841	+	448	59714152	guaD	VF_A0969	-	guanine deaminase
975	 32.86	-1	1091979..1092617	+	212	59714153	-	VF_A0970	-	hypothetical protein
976	 37.95	0	1092630..1093409	-	259	59714154	fecE	VF_A0971	-	vitamin B12 transport ATP-binding protein BtuD
977	 39.87	0	1093406..1094446	-	346	59714155	fecD	VF_A0972	-	KpLE2 phage-like element; iron-dicitrate transporter subunit
978	 37.69	0	1094446..1095363	-	305	59714156	-	VF_A0973	-	ABC transporter, periplasmic component
979	 31.01	-1	1095484..1095612	+	42	59714157	-	VF_A0974	-	hypothetical protein
980	 38.36	0	1095602..1096138	+	178	59714158	-	VF_A0975	-	adenosyltransferase
981	 32.39	-1	1096372..1097964	+	530	59714159	-	VF_A0976	-	GGDEF domain-containing protein
982	 38.38	0	1097990..1099198	-	402	59714160	ynfM	VF_A0977	-	transporter
983	 38.51	0	1099285..1100154	+	289	59714161	-	VF_A0978	-	LysR family transcriptional regulator
984	 35.78	0	1100366..1100977	+	203	59714162	-	VF_A0979	-	hypothetical protein
985	 30.73	-1	1101283..1101666	+	127	59714163	-	VF_A0980	-	hypothetical protein
986	 30.40	-1	1101705..1101977	-	90	59714164	-	VF_A0981	-	hypothetical protein
987	 36.74	0	1101998..1102849	-	283	59714165	-	VF_A0982	-	hypothetical protein
988	 28.42	-2	1102865..1103413	-	182	59714166	-	VF_A0983	-	hypothetical protein
989	 28.26	-2	1103475..1104932	+	485	59714167	yfhD	VF_A0984	-	transglycosylase
990	 25.78	-2	1104944..1106161	+	405	59714168	-	VF_A0985	-	putative lipoprotein
991	 37.11	0	1106235..1106816	-	193	59714169	-	VF_A0986	-	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme
992	 40.55	0	1106806..1107456	-	216	59714170	-	VF_A0987	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
993	 40.29	0	1107446..1108408	-	320	59714171	kdgK	VF_A0988	-	ketodeoxygluconokinase
994	 39.88	0	1108505..1109359	-	284	59714172	kbaY	VF_A0989	-	tagatose-bisphosphate aldolase
995	 41.34	+1	1109616..1112264	-	882	59714173	-	VF_A0990	-	trimethylamine-N-oxide reductase
996	 37.29	0	1112476..1113993	-	505	59714174	-	VF_A0991	-	hypothetical protein
997	 40.64	0	1114064..1115677	-	537	59714175	ydeN	VF_A0992	-	hypothetical protein
998	 38.04	0	1115718..1116950	-	410	59714176	-	VF_A0993	-	arylsulfatase regulator (Fe-S oxidoreductase)
999	 37.19	0	1117171..1119579	+	802	59714177	-	VF_A0994	-	hyaluronate lyase precursor
1000	 34.06	0	1119734..1120564	+	276	59714178	-	VF_A0995	-	high-affinity iron permease
1001	 41.24	+1	1120650..1121699	-	349	59714179	-	VF_A0996	-	hypothetical protein
1002	 42.20	+1	1121725..1122480	-	251	59714180	kduD	VF_A0997	-	2-deoxy-D-gluconate 3-dehydrogenase
1003	 40.91	0	1122550..1123380	-	276	59714181	kduI	VF_A0998	-	5-keto-4-deoxyuronate isomerase
1004	 43.39	+1	1123482..1124624	-	380	59714182	nagA3	VF_A0999	-	N-acetylglucosamine-6-phosphate deacetylase
1005	 38.81	0	1124626..1125063	-	145	59714183	-	VF_A1000	-	PTS system, N-acetylgalactosamine-specific IIA component
1006	 40.20	0	1125152..1126069	-	305	59714184	agaD	VF_A1001	-	N-acetylgalactosamine-specific enzyme IID component of PTS
37.27	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.