IslandPathversion 1.0

IslandPath Analysis: Vibrio fischeri ES114



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.27 STD DEV: 3.84
Vibrio fischeri ES114 chromosome II, complete sequence - 1..1330333
1175 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
849	 36.27	0	954299..955489	+	396	59714029	-	VF_A0846	-	hypothetical protein
850	 39.63	0	955610..956944	-	444	59714030	astB	VF_A0847	-	succinylarginine dihydrolase
851	 38.72	0	957269..958456	+	395	59714031	-	VF_A0848	-	hypothetical protein
852	 40.42	0	958565..959425	-	286	59714032	yghU	VF_A0849	-	putative glutathione S-transferase YghU
853	 36.38	0	959580..960431	+	283	59714033	-	VF_A0850	-	chloramphenicol-sensitive protein RarD
854	 38.62	0	960418..961287	-	289	59714034	-	VF_A0851	-	transcriptional regulatory protein
855	 40.52	0	961400..962554	+	384	59714035	ydcR	VF_A0852	-	fused DNA-binding transcriptional regulator/ amino transferase
856	 41.87	+1	962591..963715	+	374	59714036	-	VF_A0853	-	zinc-carboxypeptidase precursor
857	 33.49	0	964137..964781	-	214	59714037	-	VF_A0854	-	hypothetical protein
858	 40.36	0	964868..965251	-	127	172087818	-	VF_A0856	-	hypothetical protein
859	 36.84	0	965433..965774	+	113	59714040	-	VF_A0857	-	transcriptional repressor SmtB
860	 36.09	0	965865..966917	+	350	59714041	-	VF_A0858	-	arsenical-resistance protein ACR3
861	 36.43	0	966976..968850	-	624	59714042	-	VF_A0859	-	methyl-accepting chemotaxis protein
862	 29.19	-2	969354..969836	+	160	59714043	-	VF_A0860	-	hypothetical protein
863	 31.15	-1	969839..970297	+	152	59714044	-	VF_A0861	-	hypothetical protein
864	 38.41	0	970385..971920	+	511	59714045	norR2	VF_A0862	-	anaerobic nitric oxide reductase transcription regulator
865	 41.16	+1	972161..973822	+	553	59714046	hcp	VF_A0863	-	hydroxylamine reductase
866	 38.57	0	973917..974948	+	343	59714047	hcr	VF_A0864	-	HCP oxidoreductase, NADH-dependent
867	 32.28	-1	976378..978273	-	631	59714048	-	VF_A0865	-	methyl-accepting chemotaxis protein
868	 33.45	0	978674..979534	-	286	59714049	tcpF	VF_A0866	-	toxin coregulated pilus biosynthesis protein TcpF
869	 28.84	-2	979538..980584	-	348	59714050	tcpE	VF_A0867	-	toxin coregulated pilus biosynthesis protein TcpE
870	 31.46	-1	980538..982031	-	497	59714051	tcpT	VF_A0868	-	toxin coregulated pilus biosynthesis protein TcpT
871	 26.22	-2	982028..982477	-	149	59714052	tcpS	VF_A0869	-	toxin coregulated pilus biosynthesis protein TcpS
872	 24.87	-2	982491..983270	-	259	59714053	tcpD	VF_A0870	-	toxin coregulated pilus biosynthesis protein TcpD
873	 25.62	-2	983258..983737	-	159	59714054	-	VF_A0871	-	hypothetical protein
874	 32.99	-1	983724..985178	-	484	59714055	tcpC	VF_A0872	-	toxin coregulated pilus outer membrane protein TcpC
875	 29.24	-2	985183..985695	-	170	59714056	tcpQ	VF_A0873	-	toxin coregulated pilus biosynthesis protein TcpY/TcpQ
876	 34.75	0	985700..987037	-	445	59714057	tcpB	VF_A0874	-	toxin coregulated pilus biosynthesis protein TcpB
877	 37.32	0	987057..987683	-	208	59714058	tcpA	VF_A0875	-	toxin coregulated pilin subunit precursor TcpA
878	 29.07	-2	987944..988717	+	257	59714059	-	VF_A0876	-	hypothetical protein
879	 30.22	-1	988822..989463	-	213	59714060	-	VF_A0877	-	chromosome partitioning protein ParA
880	 28.21	-2	989657..990007	+	116	59714061	-	VF_A0878	-	hypothetical protein
881	 30.52	-1	990562..991449	-	295	59714062	-	VF_A0879	-	EAL domain-containing protein
882	 24.88	-2	991828..992679	+	283	59714063	-	VF_A0880	-	putative AraC-type HTH DNA-binding protein
883	 38.47	0	992699..996433	-	1244	59714064	-	VF_A0881	-	cellulose synthase operon C protein
884	 38.25	0	996424..997602	-	392	59714065	bcsZ	VF_A0882	-	endo-1,4-D-glucanase
885	 37.65	0	997602..999896	-	764	59714066	bcsB	VF_A0883	-	cellulose synthase regulator protein
886	 37.71	0	999910..1002513	-	867	59714067	bcsA	VF_A0884	-	cellulose synthase catalytic subunit
887	 35.67	0	1002517..1003287	-	256	59714068	-	VF_A0885	-	hypothetical protein
888	 32.36	-1	1003778..1005322	+	514	59714069	bcsE	VF_A0886	-	hypothetical protein
889	 33.82	0	1005327..1005530	+	67	172087819	-	VF_A1191	-	hypothetical protein
890	 37.57	0	1005530..1007158	+	542	59714070	bcsG	VF_A0887	-	inner membrane protein
891	 27.27	-2	1007406..1007702	-	98	59714071	-	VF_A0888	-	hypothetical protein
892	 34.71	0	1007930..1008436	+	168	59714072	tagD	VF_A0889	-	lipid hydroperoxide peroxidase
893	 32.52	-1	1008436..1009047	+	203	59714073	-	VF_A0890	-	thioredoxin peroxidase
894	 28.78	-2	1009204..1010412	-	402	59714074	-	VF_A0891	-	methyl-accepting chemotaxis protein
895	 36.31	0	1011436..1011906	-	156	59714075	yjgK	VF_A0892	-	hypothetical protein
896	 38.18	0	1012020..1013030	+	336	59714076	-	VF_A0893	-	AraC family transcriptional regulator
897	 39.07	0	1013132..1014928	+	598	59714077	-	VF_A0894	-	putative surface protein
898	 40.22	0	1015125..1015487	+	120	59714078	-	VF_A0895	-	hypothetical protein
899	 38.73	0	1015480..1016703	+	407	59714079	-	VF_A0896	-	multidrug resistance protein A
900	 34.49	0	1016754..1017617	-	287	59714080	-	VF_A0897	-	LysR family transcriptional regulator
901	 39.24	0	1017802..1018563	+	253	59714081	-	VF_A0898	-	putative lipoprotein
902	 41.16	+1	1018614..1020134	+	506	59714082	-	VF_A0899	-	arylsulfatase
903	 40.20	0	1020200..1021495	+	431	59714083	aslB	VF_A0900	-	regulator of arylsulfatase activity
904	 41.46	+1	1021525..1022508	+	327	59714084	-	VF_A0901	-	MoxR protein
905	 35.31	0	1022516..1023478	+	320	59714085	-	VF_A0902	-	MoxR protein
906	 36.72	0	1023481..1024011	+	176	59714086	-	VF_A0903	-	hypothetical protein
907	 39.22	0	1024004..1025056	+	350	172087820	-	VF_A1192	-	hypothetical protein
908	 37.78	0	1025049..1026824	+	591	59714087	-	VF_A0904	-	transporter
909	 34.70	0	1026824..1028065	+	413	59714088	-	VF_A0905	-	hypothetical protein
910	 37.58	0	1028288..1029442	+	384	59714089	-	VF_A0906	-	acriflavin resistance periplasmic protein
911	 39.76	0	1029464..1032577	+	1037	59714090	-	VF_A0907	-	acriflavin resistance plasma membrane protein
912	 37.43	0	1032676..1033431	+	251	59714091	-	VF_A0908	-	putative lipoprotein
913	 32.58	-1	1033488..1034285	-	265	59714092	-	VF_A0909	-	hypothetical protein
914	 33.15	-1	1034434..1034991	-	185	59714093	-	VF_A0910	-	hypothetical protein
915	 35.42	0	1035102..1036010	+	302	59714094	-	VF_A0911	-	LysR family transcriptional regulator
916	 34.48	0	1036014..1036274	-	86	172087821	-	VF_A1193	-	hypothetical protein
917	 35.77	0	1036450..1037229	+	259	59714095	-	VF_A0912	-	ABC transporter ATP-binding protein
918	 35.28	0	1037229..1038101	+	290	59714096	-	VF_A0913	-	hypothetical protein
919	 39.68	0	1038152..1039396	-	414	59714097	ytfL	VF_A0914	-	inner membrane protein
920	 35.87	0	1039639..1040190	-	183	59714098	-	VF_A0915	-	acetyltransferase
921	 38.37	0	1040298..1041668	-	456	59714099	-	VF_A0916	-	multidrug efflux pump VmrA
922	 38.51	0	1041873..1042316	+	147	59714100	-	VF_A0917	-	deoxycytidylate deaminase
923	 31.93	-1	1042357..1043067	-	236	59714101	luxG	VF_A0918	-	FMN reductase
924	 34.57	0	1043077..1044207	-	376	59714102	luxE	VF_A0919	-	long-chain-fatty-acid ligase LuxE
925	 33.13	-1	1044286..1045266	-	326	59714103	luxB	VF_A0920	-	luciferase beta chain LuxB
926	 38.58	0	1045277..1046344	-	355	59714104	luxA	VF_A0921	-	luciferase alpha chain LuxA
927	 36.90	0	1046367..1047290	-	307	59714105	luxD	VF_A0922	-	acyl transferase
928	 35.42	0	1047306..1048745	-	479	59714106	luxC	VF_A0923	-	acyl-CoA reductase LuxC
929	 34.38	0	1048783..1049355	-	190	59714107	luxI	VF_A0924	-	3-oxo-C6-HSL autoinducer synthesis protein LuxI
930	 30.41	-1	1049571..1050323	+	250	59714108	luxR	VF_A0925	-	autoinducer-binding transcriptional activator protein LuxR
931	 37.08	0	1050365..1051165	-	266	59714109	-	VF_A0926	-	hypothetical protein
932	 30.77	-1	1051347..1051541	-	64	59714110	-	VF_A0927	-	hypothetical protein
933	 42.01	+1	1051848..1052585	+	245	59714111	yjiH	VF_A0928	-	inner membrane protein
934	 41.24	+1	1052585..1053052	+	155	59714112	yjiG	VF_A0929	-	hypothetical protein
935	 44.27	+1	1053062..1054186	+	374	59714113	-	VF_A0930	-	carboxypeptidase G2 precursor
936	 35.75	0	1054291..1055076	-	261	59714114	-	VF_A0931	-	transcriptional regulatory protein, AraC-like protein
937	 40.27	0	1055100..1055618	-	172	59714115	ybhB	VF_A0932	-	kinase inhibitor
938	 34.65	0	1055758..1056213	-	151	59714116	-	VF_A0933	-	hypothetical protein
939	 39.23	0	1056449..1056838	+	129	59714117	ygbA	VF_A0934	-	hypothetical protein
940	 38.10	0	1056835..1057716	+	293	59714118	-	VF_A0935	-	LysR family transcriptional regulator
941	 33.94	0	1057732..1058562	+	276	59714119	-	VF_A0936	-	lipase/acylhydrolase family protein
942	 39.60	0	1058618..1059271	-	217	59714120	-	VF_A0937	-	phosphoglycolate phosphatase
943	 38.54	0	1059425..1060039	-	204	59714121	-	VF_A0938	-	threonine efflux protein
944	 38.48	0	1060117..1060641	+	174	59714122	-	VF_A0939	-	hypothetical protein
945	 43.48	+1	1060717..1062450	-	577	59714123	fruA	VF_A0940	-	fused fructose-specific PTS enzymes: iibcomponent/IIC components
946	 41.49	+1	1062481..1063461	-	326	59714124	fruK	VF_A0941	-	fructose-1-phosphate kinase
947	 41.78	+1	1063465..1064601	-	378	59714125	fruB	VF_A0942	-	bifunctional fructose-specific PTS IIA/HPr protein
948	 38.30	0	1064787..1064927	-	46	59714127	-	VF_A0944	-	hypothetical protein
37.27	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.