IslandPathversion 1.0

IslandPath Analysis: Vibrio fischeri ES114



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.27 STD DEV: 3.84
Vibrio fischeri ES114 chromosome II, complete sequence - 1..1330333
1175 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
754	 37.86	0	847527..849074	-	515	59713934	tyrR	VF_A0751	-	DNA-binding transcriptional regulator, tyrosine-binding
755	 37.67	0	849209..850153	+	314	59713935	ybgA	VF_A0752	-	hypothetical protein
756	 37.64	0	850143..851582	+	479	59713936	phr	VF_A0753	-	deoxyribodipyrimidine photolyase Phr, FAD-binding
757	 37.65	0	851633..853486	+	617	59713937	-	VF_A0754	-	peptide-methionine (S)-S-oxide reductase
758	 34.78	0	853512..853649	-	45	59713938	-	VF_A0755	-	hypothetical protein
759	 38.71	0	853842..854789	+	315	59713939	-	VF_A0756	-	putative lipoprotein
760	 38.15	0	854860..855378	-	172	59713940	-	VF_A0757	-	hypothetical protein
761	 37.70	0	855378..855881	-	167	59713941	-	VF_A0758	-	hypothetical protein
762	 38.25	0	855829..856398	-	189	59713942	-	VF_A0759	-	hypothetical protein
763	 38.42	0	856484..857740	-	418	59713943	cfa	VF_A0760	-	cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase)
764	 36.65	0	857749..858501	-	250	59713944	-	VF_A0761	-	plasmid partition ParA protein
765	 36.57	0	858498..859796	-	432	59713945	-	VF_A0762	-	putative dehydrogenase
766	 37.25	0	859754..860494	-	246	59713946	-	VF_A0763	-	short chain dehydrogenase
767	 33.55	0	860491..860958	-	155	59713947	-	VF_A0764	-	transcriptional regulator
768	 38.01	0	861034..861717	-	227	59713948	chrR	VF_A0765	-	zinc-binding anti-sigmaE4 factor ChrR
769	 37.42	0	861710..862321	-	203	59713949	rpoE4	VF_A0766	-	RNA polymerase sigma factor
770	 33.94	0	862543..862869	+	108	59713950	-	VF_A0767	-	cytochrome c-554(548)
771	 38.52	0	862836..864068	-	410	59713951	-	VF_A0768	-	cysteine desulfhydrase
772	 37.44	0	864052..864708	-	218	59713952	-	VF_A0769	-	agglutination protein
773	 38.24	0	864938..866140	-	400	59713953	-	VF_A0770	-	bicyclomycin resistance protein
774	 36.77	0	866219..867091	+	290	59713954	-	VF_A0771	-	LysR family transcriptional regulator
775	 39.94	0	867186..867806	+	206	59713955	-	VF_A0772	-	homogentisate export protein
776	 34.38	0	867839..868030	-	63	59713956	-	VF_A0773	-	hypothetical protein
777	 38.82	0	868162..868908	+	248	59713957	ycdX	VF_A0774	-	putative hydrolase
778	 36.40	0	868966..870138	-	390	59713958	-	VF_A0775	-	short chain dehydrogenase
779	 40.42	0	870135..870755	-	206	59713959	-	VF_A0776	-	TonB protein
780	 40.49	0	870755..871159	-	134	59713960	-	VF_A0777	-	TonB system transport protein ExbD2
781	 41.39	+1	871156..871689	-	177	59713961	-	VF_A0778	-	TolQ protein
782	 38.65	0	871689..873041	-	450	59713962	-	VF_A0779	-	TolQ protein
783	 35.96	0	873043..873804	-	253	59713963	-	VF_A0780	-	hypothetical protein
784	 39.53	0	873877..875892	-	671	59713964	-	VF_A0781	-	iron-hydroxamate transporter permease subunit
785	 36.83	0	875895..876839	-	314	59713965	-	VF_A0782	-	ferrichrome-binding protein
786	 37.50	0	876833..877600	-	255	59713966	-	VF_A0783	-	ferrichrome transport ATP-binding protein FhuC
787	 37.24	0	877714..879912	-	732	59713967	fhuA	VF_A0784	-	ferrichrome outer membrane transporter
788	 35.78	0	880057..880956	-	299	59713968	-	VF_A0785	-	AraC family transcriptional regulator
789	 38.86	0	881096..882706	-	536	59713969	-	VF_A0786	-	PTS system, glucose-specific II BC component
790	 40.27	0	883000..884571	-	523	59713970	ybiT	VF_A0787	-	ABC transporter ATP-binding protein
791	 33.33	-1	884720..885124	-	134	59713971	-	VF_A0788	-	hypothetical protein
792	 38.68	0	885354..885839	-	161	59713972	-	VF_A0789	-	lactoylglutathione lyase
793	 38.51	0	886006..886662	-	218	59713973	-	VF_A0790	-	chloramphenicol acetyltransferase
794	 35.86	0	886752..887660	+	302	59713974	-	VF_A0791	-	LysR family transcriptional regulator
795	 37.59	0	887939..888784	-	281	59713975	-	VF_A0792	-	proline iminopeptidase
796	 37.98	0	888886..889788	+	300	59713976	-	VF_A0793	-	LysR family transcriptional regulator
797	 41.52	+1	889937..891133	-	398	59713977	ackA2	VF_A0794	-	acetate kinase
798	 33.94	0	891440..892435	+	331	59713978	-	VF_A0795	-	two component response regulator
799	 36.45	0	892435..893397	+	320	59713979	adrA	VF_A0796	-	GGDEF domain-containing protein
800	 40.85	0	893612..894502	-	296	59713980	malG	VF_A0797	-	maltose transporter permease
801	 38.71	0	894571..896115	-	514	59713981	malF	VF_A0798	-	maltose transporter membrane protein
802	 40.84	0	896261..897445	-	394	59713982	malE	VF_A0799	-	maltose ABC transporter periplasmic protein
803	 41.26	+1	897854..898963	+	369	59713983	malK	VF_A0800	-	maltose/maltodextrin transporter ATP-binding protein
804	 38.34	0	899076..901031	+	651	59713984	glgX	VF_A0801	-	glycogen debranching enzyme
805	 37.69	0	901391..902332	-	313	59713985	cheV2	VF_A0802	-	CheW/CheY hybrid protein CheV2
806	 40.82	0	902525..903766	+	413	59713986	sstT	VF_A0803	-	serine/threonine transporter SstT
807	 36.80	0	903838..904500	-	220	59713987	-	VF_A0804	-	permease
808	 38.07	0	904628..906127	-	499	59713988	glgA	VF_A0805	-	glycogen synthase
809	 37.44	0	906081..907298	-	405	59713989	glgC	VF_A0806	-	glucose-1-phosphate adenylyltransferase
810	 33.64	0	907592..908245	+	217	59713990	-	VF_A0807	-	hypothetical protein
811	 40.13	0	908344..910491	-	715	59713991	glgB	VF_A0808	-	glycogen branching enzyme
812	 41.14	+1	910545..912761	-	738	172087815	malQ	VF_A0809	-	4-alpha-glucanotransferase
813	 39.85	0	912778..915231	-	817	59713993	malP	VF_A0810	-	maltodextrin phosphorylase
814	 38.40	0	915627..918332	+	901	59713994	malT	VF_A0811	-	transcriptional regulator MalT
815	 38.83	0	918423..919349	+	308	59713995	-	VF_A0812	-	integral membrane protein
816	 39.10	0	919440..920288	-	282	59713996	focA	VF_A0813	-	formate transporter
817	 33.33	-1	920457..920642	-	61	59713997	-	VF_A0814	-	hypothetical protein
818	 33.33	-1	920693..921262	-	189	59713998	tag	VF_A0815	-	3-methyl-adenine DNA glycosylase I, constitutive
819	 34.91	0	921314..921820	+	168	59713999	-	VF_A0816	-	hypothetical protein
820	 36.36	0	921817..922377	+	186	59714000	-	VF_A0817	-	Sco1-related protein
821	 36.99	0	922358..922849	+	163	59714001	-	VF_A0818	-	hypothetical protein
822	 40.53	0	923014..923847	+	277	59714002	-	VF_A0819	-	drug/metabolite exporter family protein
823	 32.23	-1	923921..924466	-	181	59714003	rpoE3	VF_A0820	-	RNA polymerase sigma factor SigZ
824	 38.40	0	924577..925287	-	236	59714004	-	VF_A0821	-	glutathione S-transferase
825	 33.33	-1	925424..925681	-	85	59714005	-	VF_A0822	-	hypothetical protein
826	 43.27	+1	925784..926578	-	264	59714006	-	VF_A0823	-	vulnibactin utilization protein ViuB
827	 37.53	0	926590..927351	-	253	59714007	vctC	VF_A0824	-	ferric anguibactin transport ATP-binding protein
828	 34.81	0	927360..928310	-	316	59714008	-	VF_A0825	-	ferric anguibactin transport system permease protein FatC
829	 36.33	0	928361..929194	-	277	59714009	vctD	VF_A0826	-	ferric anguibactin transport system permease protein FatD
830	 35.76	0	929268..930173	-	301	59714010	vctP	VF_A0827	-	ferric anguibactin-binding protein
831	 37.18	0	930385..930618	-	77	172087816	-	VF_A1190	-	hypothetical protein
832	 37.47	0	930886..931248	-	120	59714011	-	VF_A0828	-	glutaredoxin 2
833	 40.15	0	931434..932930	-	498	59714012	putP	VF_A0829	-	proline:sodium symporter
834	 40.82	0	933040..933747	-	235	59714013	-	VF_A0830	-	delta-1-pyrroline-5-carboxylate dehydrogenase
835	 41.11	+1	933762..936938	-	1058	172087817	putA	VF_A0832	-	proline dehydrogenase
836	 32.44	-1	937098..937880	-	260	59714016	-	VF_A0833	-	AraC family transcriptional regulator
837	 39.73	0	938314..940188	+	624	59714017	-	VF_A0834	-	NirV precursor
838	 37.90	0	940344..941132	+	262	59714018	ybbM	VF_A0835	-	inner membrane protein
839	 41.41	+1	941168..942220	+	350	59714019	tas	VF_A0836	-	oxidoreductase, NADP(H)-dependent aldo-keto reductase
840	 37.66	0	942485..945538	-	1017	59714020	-	VF_A0837	-	putative ATPase involved in pili biogenesis
841	 38.30	0	945861..946766	+	301	59714021	-	VF_A0838	-	hypothetical protein
842	 41.32	+1	946838..947764	-	308	59714022	speB	VF_A0839	-	agmatinase
843	 40.50	0	947764..949674	-	636	59714023	speA	VF_A0840	-	arginine decarboxylase
844	 45.16	+2	949957..951216	+	419	59714024	-	VF_A0841	-	3-hydroxy-3-methylglutaryl-coenzyme A reductase
845	 35.40	0	951297..951827	-	176	59714025	blc	VF_A0842	-	outer membrane lipoprotein (lipocalin)
846	 21.67	-2	951912..952031	-	39	59714026	-	VF_A0843	-	hypothetical protein
847	 40.71	0	952063..953214	+	383	59714027	-	VF_A0844	-	outer membrane protein P1 precursor
848	 38.54	0	953272..954078	-	268	59714028	-	VF_A0845	-	hypothetical protein
849	 36.27	0	954299..955489	+	396	59714029	-	VF_A0846	-	hypothetical protein
850	 39.63	0	955610..956944	-	444	59714030	astB	VF_A0847	-	succinylarginine dihydrolase
851	 38.72	0	957269..958456	+	395	59714031	-	VF_A0848	-	hypothetical protein
852	 40.42	0	958565..959425	-	286	59714032	yghU	VF_A0849	-	putative glutathione S-transferase YghU
853	 36.38	0	959580..960431	+	283	59714033	-	VF_A0850	-	chloramphenicol-sensitive protein RarD
37.27	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.