IslandPath Analysis: Vibrio fischeri ES114



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.27   STD DEV: 3.84
Vibrio fischeri ES114 chromosome II, complete sequence - 1..1330333
1175 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
675	 41.71	+1	744925..745473	-	182	59713857	-	VF_A0674	-	hypothetical protein
676	 36.27	0	746042..746143	-	33	59713858	-	VF_A0675	-	hypothetical protein
677	 38.86	0	746486..747136	+	216	59713859	-	VF_A0676	-	hypothetical protein
678	 40.28	0	747434..749347	-	637	59713860	-	VF_A0677	-	methyl-accepting chemotaxis protein
679	 44.10	+1	749540..750496	+	318	59713861	-	VF_A0678	-	MoxR protein
680	 41.98	+1	750545..751504	+	319	59713862	-	VF_A0679	-	putative cytoplasmic protein
681	 41.76	+1	751504..752037	+	177	59713863	-	VF_A0680	-	hypothetical protein
682	 43.27	+1	752030..752995	+	321	59713864	-	VF_A0681	-	hypothetical protein
683	 39.57	0	752988..754895	+	635	59713865	-	VF_A0682	-	transporter
684	 38.17	0	754889..756562	+	557	59713866	-	VF_A0683	-	hypothetical protein
685	 37.37	0	756610..756708	-	32	59713867	-	VF_A0684	-	hypothetical protein
686	 43.74	+1	756912..757862	+	316	59713868	talB	VF_A0685	-	transaldolase B
687	 45.33	+2	758176..760167	+	663	59713869	tktB	VF_A0686	-	transketolase
688	 38.25	0	760252..761187	-	311	59713870	htrB1	VF_A0687	-	lipid A biosynthesis lauroyl acyltransferase
689	 28.48	-2	761408..762190	-	260	59713871	-	VF_A0688	-	hypothetical protein
690	 39.82	0	762407..763300	+	297	59713872	-	VF_A0689	-	hypothetical protein
691	 39.49	0	763333..767424	+	1363	59713873	-	VF_A0690	-	hypothetical protein
692	 36.23	0	767485..768141	-	218	59713874	nfsB	VF_A0691	-	dihydropteridine reductase, NAD(P)H-dependent, oxygen-insensitive
693	 33.56	0	768231..769550	-	439	59713875	-	VF_A0692	-	GGDEF domain-containing protein
694	 38.38	0	769866..770063	+	65	59713876	-	VF_A0693	-	hypothetical protein
695	 35.30	0	770256..770966	+	236	59713877	-	VF_A0694	-	hexapeptide repeat-containing transferase
696	 43.01	+1	771042..772085	-	347	59713878	guaC	VF_A0695	-	guanosine 5'-monophosphate oxidoreductase
697	 38.93	0	772546..773850	+	434	59713879	-	VF_A0696	-	inosine-guanosine kinase
698	 38.35	0	773927..774205	-	92	59713880	ppiC	VF_A0697	-	peptidyl-prolyl cis-trans isomerase C (rotamase C)
699	 37.79	0	774346..775242	+	298	59713881	cheV3	VF_A0698	-	CheW/CheY hybrid protein CheV3
700	 40.79	0	775364..776047	-	227	59713882	-	VF_A0699	-	nodulation protein N
701	 41.29	+1	776488..777606	-	372	59713883	gcvT	VF_A0700	-	aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex
702	 39.42	0	777672..778328	-	218	59713884	-	VF_A0701	-	transcriptional regulator
703	 41.73	+1	778596..778976	+	126	59713885	gcvH	VF_A0702	-	glycine cleavage system protein H
704	 42.71	+1	779000..781867	+	955	59713886	gcvP	VF_A0703	-	glycine dehydrogenase
705	 36.12	0	782181..782789	-	202	59713887	-	VF_A0704	-	hypothetical protein
706	 40.56	0	782758..789201	-	2147	59713888	-	VF_A0705	-	hypothetical protein
707	 36.87	0	790265..792298	+	677	59713889	-	VF_A0706	-	EAL domain-containing protein
708	 39.63	0	792386..793258	-	290	59713890	-	VF_A0707	-	drug/metabolite exporter family protein
709	 39.63	0	793340..794197	-	285	59713891	yijO	VF_A0708	-	DNA-binding transcriptional regulator
710	 26.14	-2	794188..794340	-	50	172087812	-	VF_A1188	-	hypothetical protein
711	 41.75	+1	794498..796399	+	633	59713892	-	VF_A0709	-	PTS system, mannose-specific IIAB component
712	 38.51	0	796471..797667	+	398	59713893	manA	VF_A0710	-	mannose-6-phosphate isomerase
713	 39.06	0	797847..798632	-	261	59713894	-	VF_A0711	-	PTS system, IIA component
714	 36.33	0	798632..798931	-	99	59713895	-	VF_A0712	-	hypothetical protein
715	 42.51	+1	799136..801031	+	631	59713896	frwC	VF_A0713	-	enzyme IIC component of PTS
716	 38.98	0	801099..803417	-	772	59713897	-	VF_A0714	-	serine protease
717	 41.98	+1	804162..807479	+	1105	59713898	-	VF_A0715	-	chitodextrinase precursor
718	 36.05	0	808046..808192	-	48	59713899	-	VF_A0716	-	hypothetical protein
719	 38.32	0	808534..809736	-	400	59713900	-	VF_A0717	-	putative lipoprotein
720	 38.88	0	809736..810962	-	408	59713901	-	VF_A0718	-	hypothetical protein
721	 37.11	0	811053..815894	-	1613	59713902	-	VF_A0719	-	hypothetical protein
722	 39.10	0	815894..816985	-	363	59713903	-	VF_A0720	-	putative lipoprotein
723	 36.17	0	816990..818684	-	564	59713904	-	VF_A0721	-	hypothetical protein
724	 40.21	0	818936..820477	-	513	59713905	-	VF_A0722	-	sodium/proton antiporter
725	 32.48	-1	820810..821280	+	156	59713906	-	VF_A0723	-	hypothetical protein
726	 37.66	0	821281..822204	-	307	59713907	-	VF_A0724	-	LysR family transcriptional regulator
727	 38.90	0	822303..823343	+	346	59713908	-	VF_A0725	-	choloylglycine hydrolase family protein
728	 38.75	0	823420..824397	-	325	59713909	-	VF_A0726	-	NAD-dependent oxidoreductase
729	 36.78	0	824428..824775	-	115	59713910	-	VF_A0727	-	putative cytoplasmic protein
730	 37.28	0	824852..825130	-	92	59713911	-	VF_A0728	-	acetyltransferase
731	 39.61	0	825171..826349	-	392	59713912	-	VF_A0729	-	major facilitator transporter
732	 36.26	0	826434..827321	-	295	59713913	abgR	VF_A0730	-	DNA-binding transcriptional regulator
733	 41.61	+1	827466..829097	+	543	59713914	treC	VF_A0731	-	trehalose-6-P hydrolase
734	 37.06	0	829167..829970	-	267	59713915	-	VF_A0732	-	transcriptional regulator
735	 38.18	0	829967..831019	-	350	59713916	-	VF_A0733	-	two component sensor histidine kinase
736	 42.24	+1	831096..832274	-	392	59713917	-	VF_A0734	-	hypothetical protein
737	 40.73	0	832277..833074	-	265	59713918	-	VF_A0735	-	hypothetical protein
738	 41.77	+1	833067..834335	-	422	59713919	-	VF_A0736	-	ABC transporter permease protein
739	 43.42	+1	834323..835006	-	227	59713920	-	VF_A0737	-	ABC transporter ATP-binding protein
740	 43.15	+1	835016..835657	-	213	59713921	-	VF_A0738	-	hypothetical protein
741	 41.62	+1	835843..836337	+	164	59713922	yhhY	VF_A0739	-	acetyltransferase
742	 40.74	0	836414..836683	-	89	59713923	ybiI	VF_A0740	-	hypothetical protein
743	 40.90	0	836867..837871	-	334	59713924	-	VF_A0741	-	hypothetical protein
744	 38.30	0	837994..839019	-	341	59713925	-	VF_A0742	-	hypothetical protein
745	 39.51	0	839032..840099	-	355	59713926	-	VF_A0743	-	multidrug resistance protein A
746	 34.46	0	840214..841101	+	295	59713927	-	VF_A0744	-	LysR family transcriptional regulator
747	 39.06	0	841432..842112	-	226	59713928	bioD	VF_A0745	-	dithiobiotin synthetase
748	 38.93	0	842105..842926	-	273	59713929	bioC	VF_A0746	-	biotin biosynthesis protein BioC
749	 42.19	+1	842933..844084	-	383	172087813	bioF	VF_A0747	-	8-amino-7-oxononanoate synthase
750	 41.79	+1	844068..845120	-	350	172087814	bioB	VF_A1189	-	biotin synthase
751	 43.48	+1	845249..846529	+	426	59713931	bioA	VF_A0748	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
752	 33.33	-1	846605..846814	-	69	59713932	-	VF_A0749	-	hypothetical protein
753	 38.53	0	846958..847515	-	185	59713933	rimJ	VF_A0750	-	ribosomal-protein-S5-alanine N-acetyltransferase
754	 37.86	0	847527..849074	-	515	59713934	tyrR	VF_A0751	-	DNA-binding transcriptional regulator, tyrosine-binding
755	 37.67	0	849209..850153	+	314	59713935	ybgA	VF_A0752	-	hypothetical protein
756	 37.64	0	850143..851582	+	479	59713936	phr	VF_A0753	-	deoxyribodipyrimidine photolyase Phr, FAD-binding
757	 37.65	0	851633..853486	+	617	59713937	-	VF_A0754	-	peptide-methionine (S)-S-oxide reductase
758	 34.78	0	853512..853649	-	45	59713938	-	VF_A0755	-	hypothetical protein
759	 38.71	0	853842..854789	+	315	59713939	-	VF_A0756	-	putative lipoprotein
760	 38.15	0	854860..855378	-	172	59713940	-	VF_A0757	-	hypothetical protein
761	 37.70	0	855378..855881	-	167	59713941	-	VF_A0758	-	hypothetical protein
762	 38.25	0	855829..856398	-	189	59713942	-	VF_A0759	-	hypothetical protein
763	 38.42	0	856484..857740	-	418	59713943	cfa	VF_A0760	-	cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase)
764	 36.65	0	857749..858501	-	250	59713944	-	VF_A0761	-	plasmid partition ParA protein
765	 36.57	0	858498..859796	-	432	59713945	-	VF_A0762	-	putative dehydrogenase
766	 37.25	0	859754..860494	-	246	59713946	-	VF_A0763	-	short chain dehydrogenase
767	 33.55	0	860491..860958	-	155	59713947	-	VF_A0764	-	transcriptional regulator
768	 38.01	0	861034..861717	-	227	59713948	chrR	VF_A0765	-	zinc-binding anti-sigmaE4 factor ChrR
769	 37.42	0	861710..862321	-	203	59713949	rpoE4	VF_A0766	-	RNA polymerase sigma factor
770	 33.94	0	862543..862869	+	108	59713950	-	VF_A0767	-	cytochrome c-554(548)
771	 38.52	0	862836..864068	-	410	59713951	-	VF_A0768	-	cysteine desulfhydrase
772	 37.44	0	864052..864708	-	218	59713952	-	VF_A0769	-	agglutination protein
773	 38.24	0	864938..866140	-	400	59713953	-	VF_A0770	-	bicyclomycin resistance protein
774	 36.77	0	866219..867091	+	290	59713954	-	VF_A0771	-	LysR family transcriptional regulator
37.27	MEAN

3.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.