IslandPath Analysis: Vibrio fischeri ES114



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.27   STD DEV: 3.84
Vibrio fischeri ES114 chromosome II, complete sequence - 1..1330333
1175 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
631	 34.54	0	708464..708961	-	165	59713813	-	VF_A0630	-	hypothetical protein
632	 31.76	-1	709110..710063	-	317	59713814	-	VF_A0631	-	hypothetical protein
633	 36.96	0	710353..710931	-	192	59713815	-	VF_A0632	-	hypothetical protein
634	 39.90	0	711245..711625	-	126	59713816	-	VF_A0633	-	hypothetical protein
635	 30.22	-1	711895..712119	-	74	59713817	-	VF_A0634	-	hypothetical protein
636	 32.91	-1	712222..712695	-	157	59713818	-	VF_A0635	-	hypothetical protein
637	 33.68	0	712801..713085	-	94	59713819	-	VF_A0636	-	hypothetical protein
638	 36.24	0	714441..714956	-	171	59713820	-	VF_A0637	-	hypothetical protein
639	 36.51	0	715230..715859	-	209	59713821	-	VF_A0638	-	hypothetical protein
640	 38.94	0	716019..716375	-	118	59713822	-	VF_A0639	-	hypothetical protein
641	 36.01	0	716541..716951	-	136	59713823	-	VF_A0640	-	glyoxylase
642	 40.13	0	717197..717505	-	102	59713824	-	VF_A0641	-	hypothetical protein
643	 31.44	-1	717783..718151	+	122	59713825	-	VF_A0642	-	hypothetical protein
644	 38.28	0	718320..719108	-	262	59713826	-	VF_A0643	-	phosphotransferase family protein
645	 34.15	0	719883..720251	+	122	59713827	-	VF_A0644	-	hypothetical protein
646	 35.36	0	720374..720817	-	147	59713828	-	VF_A0645	-	acetyltransferase
647	 35.08	0	720959..721417	-	152	59713829	-	VF_A0646	-	hypothetical protein
648	 32.73	-1	721572..722393	-	273	59713830	-	VF_A0647	-	hypothetical protein
649	 32.79	-1	722406..722771	-	121	59713831	-	VF_A0648	-	hypothetical protein
650	 37.46	0	722927..723241	-	104	59713832	-	VF_A0649	-	toxin of toxin-antitoxin (TA) stability system
651	 36.47	0	723232..723486	-	84	59713833	-	VF_A0650	-	antitoxin of toxin-antitoxin (TA) stability system
652	 32.74	-1	724331..725500	+	389	59713834	-	VF_A0651	-	hypothetical protein
653	 30.41	-1	725517..726542	+	341	59713835	-	VF_A0652	-	hypothetical protein
654	 34.22	0	726708..727160	-	150	59713836	-	VF_A0653	-	IAA acetyltransferase
655	 32.35	-1	727310..727819	-	169	59713837	-	VF_A0654	-	hypothetical protein
656	 32.32	-1	727937..728824	-	295	59713838	-	VF_A0655	-	hypothetical protein
657	 35.62	0	729551..730075	-	174	59713839	-	VF_A0656	-	hypothetical protein
658	 29.70	-1	730330..730632	+	100	59713840	-	VF_A0657	-	hypothetical protein
659	 37.47	0	730824..731234	-	136	59713841	-	VF_A0658	-	hypothetical protein
660	 30.69	-1	732588..732890	+	100	59713842	-	VF_A0659	-	hypothetical protein
661	 32.08	-1	733032..733430	-	132	59713843	-	VF_A0660	-	prolyl endopeptidase
662	 33.06	-1	733701..734072	-	123	59713844	-	VF_A0661	-	hypothetical protein
663	 36.15	0	734270..734695	-	141	59713845	-	VF_A0662	-	acetyltransferase
664	 38.01	0	735018..736001	+	327	59713846	-	VF_A0663	-	XerC/CodV family integrase/recombinase
665	 34.48	0	736008..736181	-	57	59713847	-	VF_A0664	-	hypothetical protein
666	 38.67	0	736184..737008	-	274	59713848	-	VF_A0665	-	putative cytoplasmic protein
667	 42.25	+1	737031..737456	-	141	59713849	ydiI	VF_A0666	-	hypothetical protein
668	 38.30	0	737601..738305	+	234	59713850	-	VF_A0667	-	hypothetical protein
669	 40.80	0	738408..738608	-	66	59713851	-	VF_A0668	-	hypothetical protein
670	 38.01	0	739193..739534	-	113	59713852	-	VF_A0669	-	hypothetical protein
671	 33.33	-1	739908..740099	-	63	59713853	-	VF_A0670	-	hypothetical protein
672	 36.14	0	740479..740976	-	165	59713854	-	VF_A0671	-	hypothetical protein
673	 40.58	0	741538..743676	-	712	59713855	-	VF_A0672	-	outer membrane heme receptor
674	 39.22	0	743673..744692	-	339	59713856	sbmA	VF_A0673	-	putative transporter
675	 41.71	+1	744925..745473	-	182	59713857	-	VF_A0674	-	hypothetical protein
676	 36.27	0	746042..746143	-	33	59713858	-	VF_A0675	-	hypothetical protein
677	 38.86	0	746486..747136	+	216	59713859	-	VF_A0676	-	hypothetical protein
678	 40.28	0	747434..749347	-	637	59713860	-	VF_A0677	-	methyl-accepting chemotaxis protein
679	 44.10	+1	749540..750496	+	318	59713861	-	VF_A0678	-	MoxR protein
680	 41.98	+1	750545..751504	+	319	59713862	-	VF_A0679	-	putative cytoplasmic protein
681	 41.76	+1	751504..752037	+	177	59713863	-	VF_A0680	-	hypothetical protein
682	 43.27	+1	752030..752995	+	321	59713864	-	VF_A0681	-	hypothetical protein
683	 39.57	0	752988..754895	+	635	59713865	-	VF_A0682	-	transporter
684	 38.17	0	754889..756562	+	557	59713866	-	VF_A0683	-	hypothetical protein
685	 37.37	0	756610..756708	-	32	59713867	-	VF_A0684	-	hypothetical protein
686	 43.74	+1	756912..757862	+	316	59713868	talB	VF_A0685	-	transaldolase B
687	 45.33	+2	758176..760167	+	663	59713869	tktB	VF_A0686	-	transketolase
688	 38.25	0	760252..761187	-	311	59713870	htrB1	VF_A0687	-	lipid A biosynthesis lauroyl acyltransferase
689	 28.48	-2	761408..762190	-	260	59713871	-	VF_A0688	-	hypothetical protein
690	 39.82	0	762407..763300	+	297	59713872	-	VF_A0689	-	hypothetical protein
691	 39.49	0	763333..767424	+	1363	59713873	-	VF_A0690	-	hypothetical protein
692	 36.23	0	767485..768141	-	218	59713874	nfsB	VF_A0691	-	dihydropteridine reductase, NAD(P)H-dependent, oxygen-insensitive
693	 33.56	0	768231..769550	-	439	59713875	-	VF_A0692	-	GGDEF domain-containing protein
694	 38.38	0	769866..770063	+	65	59713876	-	VF_A0693	-	hypothetical protein
695	 35.30	0	770256..770966	+	236	59713877	-	VF_A0694	-	hexapeptide repeat-containing transferase
696	 43.01	+1	771042..772085	-	347	59713878	guaC	VF_A0695	-	guanosine 5'-monophosphate oxidoreductase
697	 38.93	0	772546..773850	+	434	59713879	-	VF_A0696	-	inosine-guanosine kinase
698	 38.35	0	773927..774205	-	92	59713880	ppiC	VF_A0697	-	peptidyl-prolyl cis-trans isomerase C (rotamase C)
699	 37.79	0	774346..775242	+	298	59713881	cheV3	VF_A0698	-	CheW/CheY hybrid protein CheV3
700	 40.79	0	775364..776047	-	227	59713882	-	VF_A0699	-	nodulation protein N
701	 41.29	+1	776488..777606	-	372	59713883	gcvT	VF_A0700	-	aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex
702	 39.42	0	777672..778328	-	218	59713884	-	VF_A0701	-	transcriptional regulator
703	 41.73	+1	778596..778976	+	126	59713885	gcvH	VF_A0702	-	glycine cleavage system protein H
704	 42.71	+1	779000..781867	+	955	59713886	gcvP	VF_A0703	-	glycine dehydrogenase
705	 36.12	0	782181..782789	-	202	59713887	-	VF_A0704	-	hypothetical protein
706	 40.56	0	782758..789201	-	2147	59713888	-	VF_A0705	-	hypothetical protein
707	 36.87	0	790265..792298	+	677	59713889	-	VF_A0706	-	EAL domain-containing protein
708	 39.63	0	792386..793258	-	290	59713890	-	VF_A0707	-	drug/metabolite exporter family protein
709	 39.63	0	793340..794197	-	285	59713891	yijO	VF_A0708	-	DNA-binding transcriptional regulator
710	 26.14	-2	794188..794340	-	50	172087812	-	VF_A1188	-	hypothetical protein
711	 41.75	+1	794498..796399	+	633	59713892	-	VF_A0709	-	PTS system, mannose-specific IIAB component
712	 38.51	0	796471..797667	+	398	59713893	manA	VF_A0710	-	mannose-6-phosphate isomerase
713	 39.06	0	797847..798632	-	261	59713894	-	VF_A0711	-	PTS system, IIA component
714	 36.33	0	798632..798931	-	99	59713895	-	VF_A0712	-	hypothetical protein
715	 42.51	+1	799136..801031	+	631	59713896	frwC	VF_A0713	-	enzyme IIC component of PTS
716	 38.98	0	801099..803417	-	772	59713897	-	VF_A0714	-	serine protease
717	 41.98	+1	804162..807479	+	1105	59713898	-	VF_A0715	-	chitodextrinase precursor
718	 36.05	0	808046..808192	-	48	59713899	-	VF_A0716	-	hypothetical protein
719	 38.32	0	808534..809736	-	400	59713900	-	VF_A0717	-	putative lipoprotein
720	 38.88	0	809736..810962	-	408	59713901	-	VF_A0718	-	hypothetical protein
721	 37.11	0	811053..815894	-	1613	59713902	-	VF_A0719	-	hypothetical protein
722	 39.10	0	815894..816985	-	363	59713903	-	VF_A0720	-	putative lipoprotein
723	 36.17	0	816990..818684	-	564	59713904	-	VF_A0721	-	hypothetical protein
724	 40.21	0	818936..820477	-	513	59713905	-	VF_A0722	-	sodium/proton antiporter
725	 32.48	-1	820810..821280	+	156	59713906	-	VF_A0723	-	hypothetical protein
726	 37.66	0	821281..822204	-	307	59713907	-	VF_A0724	-	LysR family transcriptional regulator
727	 38.90	0	822303..823343	+	346	59713908	-	VF_A0725	-	choloylglycine hydrolase family protein
728	 38.75	0	823420..824397	-	325	59713909	-	VF_A0726	-	NAD-dependent oxidoreductase
729	 36.78	0	824428..824775	-	115	59713910	-	VF_A0727	-	putative cytoplasmic protein
730	 37.28	0	824852..825130	-	92	59713911	-	VF_A0728	-	acetyltransferase
37.27	MEAN

3.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.