IslandPath Analysis: Vibrio fischeri ES114



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.27   STD DEV: 3.84
Vibrio fischeri ES114 chromosome II, complete sequence - 1..1330333
1175 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
600	 37.84	0	682386..682895	-	169	59713783	-	VF_A0600	-	hypothetical protein
601	 37.04	0	682902..683414	-	170	59713784	-	VF_A0601	-	nicotinic acid mononucleotide adenylyltransferase
602	 37.91	0	683569..684399	+	276	59713785	nadE	VF_A0602	-	NAD synthetase
603	 32.98	-1	684396..684680	-	94	59713786	yhbQ	VF_A0603	-	endonuclease
604	 37.77	0	684680..685333	-	217	59713787	yceH	VF_A0604	-	hypothetical protein
605	 39.05	0	685485..685904	+	139	59713788	-	VF_A0605	-	hypothetical protein
606	 37.54	0	686004..686312	+	102	59713789	-	VF_A0606	-	hypothetical protein
607	 37.61	0	686377..686820	-	147	59713790	-	VF_A0607	-	hypothetical protein
608	 38.91	0	686820..687824	-	334	59713791	-	VF_A0608	-	two component response regulator
609	 35.52	0	687960..688325	-	121	59713792	-	VF_A0609	-	hypothetical protein
610	 39.31	0	688651..689202	-	183	59713793	-	VF_A0610	-	hypothetical protein
611	 42.13	+1	689520..690758	+	412	59713794	yhjX	VF_A0611	-	transporter
612	 36.86	0	690868..693222	+	784	59713795	-	VF_A0612	-	9-hexadecenoic acid cis-trans isomerase
613	 34.27	0	693386..693916	+	176	59713796	-	VF_A0613	-	hypothetical protein
614	 34.93	0	693922..694296	-	124	59713797	-	VF_A0614	-	hypothetical protein
615	 36.75	0	694489..695892	-	467	59713798	-	VF_A0615	-	hypothetical protein
616	 32.91	-1	696071..696304	-	77	59713799	-	VF_A0616	-	hypothetical protein
617	 40.62	0	696468..698114	+	548	59713800	-	VF_A0617	-	hypothetical protein
618	 38.03	0	698416..699756	+	446	59713801	-	VF_A0618	-	hypothetical protein
619	 39.76	0	700152..700400	-	82	59713802	-	VF_A0619	-	hypothetical protein
620	 35.96	0	700605..700832	+	75	59713803	-	VF_A0620	-	hypothetical protein
621	 35.03	0	700904..701434	-	176	59713804	-	VF_A0621	-	hypothetical protein
622	 34.03	0	701630..702205	-	191	59713805	-	VF_A0622	-	putative lipoprotein
623	 23.53	-2	702519..702620	-	33	59713806	-	VF_A0623	-	hypothetical protein
624	 36.31	0	703278..703982	-	234	59713807	ygeA	VF_A0624	-	racemase
625	 33.78	0	704117..704566	-	149	59713808	-	VF_A0625	-	hypothetical protein
626	 32.64	-1	704628..705062	-	144	59713809	-	VF_A0626	-	acetyltransferase
627	 31.69	-1	705313..705861	-	182	59713810	-	VF_A0627	-	hypothetical protein
628	 35.87	0	706054..706920	+	288	59713811	-	VF_A0628	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
629	 29.02	-2	707120..707374	-	84	172087811	-	VF_A1187	-	hypothetical protein
630	 33.06	-1	707406..707768	-	120	59713812	-	VF_A0629	-	hypothetical protein
631	 34.54	0	708464..708961	-	165	59713813	-	VF_A0630	-	hypothetical protein
632	 31.76	-1	709110..710063	-	317	59713814	-	VF_A0631	-	hypothetical protein
633	 36.96	0	710353..710931	-	192	59713815	-	VF_A0632	-	hypothetical protein
634	 39.90	0	711245..711625	-	126	59713816	-	VF_A0633	-	hypothetical protein
635	 30.22	-1	711895..712119	-	74	59713817	-	VF_A0634	-	hypothetical protein
636	 32.91	-1	712222..712695	-	157	59713818	-	VF_A0635	-	hypothetical protein
637	 33.68	0	712801..713085	-	94	59713819	-	VF_A0636	-	hypothetical protein
638	 36.24	0	714441..714956	-	171	59713820	-	VF_A0637	-	hypothetical protein
639	 36.51	0	715230..715859	-	209	59713821	-	VF_A0638	-	hypothetical protein
640	 38.94	0	716019..716375	-	118	59713822	-	VF_A0639	-	hypothetical protein
641	 36.01	0	716541..716951	-	136	59713823	-	VF_A0640	-	glyoxylase
642	 40.13	0	717197..717505	-	102	59713824	-	VF_A0641	-	hypothetical protein
643	 31.44	-1	717783..718151	+	122	59713825	-	VF_A0642	-	hypothetical protein
644	 38.28	0	718320..719108	-	262	59713826	-	VF_A0643	-	phosphotransferase family protein
645	 34.15	0	719883..720251	+	122	59713827	-	VF_A0644	-	hypothetical protein
646	 35.36	0	720374..720817	-	147	59713828	-	VF_A0645	-	acetyltransferase
647	 35.08	0	720959..721417	-	152	59713829	-	VF_A0646	-	hypothetical protein
648	 32.73	-1	721572..722393	-	273	59713830	-	VF_A0647	-	hypothetical protein
649	 32.79	-1	722406..722771	-	121	59713831	-	VF_A0648	-	hypothetical protein
650	 37.46	0	722927..723241	-	104	59713832	-	VF_A0649	-	toxin of toxin-antitoxin (TA) stability system
651	 36.47	0	723232..723486	-	84	59713833	-	VF_A0650	-	antitoxin of toxin-antitoxin (TA) stability system
652	 32.74	-1	724331..725500	+	389	59713834	-	VF_A0651	-	hypothetical protein
653	 30.41	-1	725517..726542	+	341	59713835	-	VF_A0652	-	hypothetical protein
654	 34.22	0	726708..727160	-	150	59713836	-	VF_A0653	-	IAA acetyltransferase
655	 32.35	-1	727310..727819	-	169	59713837	-	VF_A0654	-	hypothetical protein
656	 32.32	-1	727937..728824	-	295	59713838	-	VF_A0655	-	hypothetical protein
657	 35.62	0	729551..730075	-	174	59713839	-	VF_A0656	-	hypothetical protein
658	 29.70	-1	730330..730632	+	100	59713840	-	VF_A0657	-	hypothetical protein
659	 37.47	0	730824..731234	-	136	59713841	-	VF_A0658	-	hypothetical protein
660	 30.69	-1	732588..732890	+	100	59713842	-	VF_A0659	-	hypothetical protein
661	 32.08	-1	733032..733430	-	132	59713843	-	VF_A0660	-	prolyl endopeptidase
662	 33.06	-1	733701..734072	-	123	59713844	-	VF_A0661	-	hypothetical protein
663	 36.15	0	734270..734695	-	141	59713845	-	VF_A0662	-	acetyltransferase
664	 38.01	0	735018..736001	+	327	59713846	-	VF_A0663	-	XerC/CodV family integrase/recombinase
665	 34.48	0	736008..736181	-	57	59713847	-	VF_A0664	-	hypothetical protein
666	 38.67	0	736184..737008	-	274	59713848	-	VF_A0665	-	putative cytoplasmic protein
667	 42.25	+1	737031..737456	-	141	59713849	ydiI	VF_A0666	-	hypothetical protein
668	 38.30	0	737601..738305	+	234	59713850	-	VF_A0667	-	hypothetical protein
669	 40.80	0	738408..738608	-	66	59713851	-	VF_A0668	-	hypothetical protein
670	 38.01	0	739193..739534	-	113	59713852	-	VF_A0669	-	hypothetical protein
671	 33.33	-1	739908..740099	-	63	59713853	-	VF_A0670	-	hypothetical protein
672	 36.14	0	740479..740976	-	165	59713854	-	VF_A0671	-	hypothetical protein
673	 40.58	0	741538..743676	-	712	59713855	-	VF_A0672	-	outer membrane heme receptor
674	 39.22	0	743673..744692	-	339	59713856	sbmA	VF_A0673	-	putative transporter
675	 41.71	+1	744925..745473	-	182	59713857	-	VF_A0674	-	hypothetical protein
676	 36.27	0	746042..746143	-	33	59713858	-	VF_A0675	-	hypothetical protein
677	 38.86	0	746486..747136	+	216	59713859	-	VF_A0676	-	hypothetical protein
678	 40.28	0	747434..749347	-	637	59713860	-	VF_A0677	-	methyl-accepting chemotaxis protein
679	 44.10	+1	749540..750496	+	318	59713861	-	VF_A0678	-	MoxR protein
680	 41.98	+1	750545..751504	+	319	59713862	-	VF_A0679	-	putative cytoplasmic protein
681	 41.76	+1	751504..752037	+	177	59713863	-	VF_A0680	-	hypothetical protein
682	 43.27	+1	752030..752995	+	321	59713864	-	VF_A0681	-	hypothetical protein
683	 39.57	0	752988..754895	+	635	59713865	-	VF_A0682	-	transporter
684	 38.17	0	754889..756562	+	557	59713866	-	VF_A0683	-	hypothetical protein
685	 37.37	0	756610..756708	-	32	59713867	-	VF_A0684	-	hypothetical protein
686	 43.74	+1	756912..757862	+	316	59713868	talB	VF_A0685	-	transaldolase B
687	 45.33	+2	758176..760167	+	663	59713869	tktB	VF_A0686	-	transketolase
688	 38.25	0	760252..761187	-	311	59713870	htrB1	VF_A0687	-	lipid A biosynthesis lauroyl acyltransferase
689	 28.48	-2	761408..762190	-	260	59713871	-	VF_A0688	-	hypothetical protein
690	 39.82	0	762407..763300	+	297	59713872	-	VF_A0689	-	hypothetical protein
691	 39.49	0	763333..767424	+	1363	59713873	-	VF_A0690	-	hypothetical protein
692	 36.23	0	767485..768141	-	218	59713874	nfsB	VF_A0691	-	dihydropteridine reductase, NAD(P)H-dependent, oxygen-insensitive
693	 33.56	0	768231..769550	-	439	59713875	-	VF_A0692	-	GGDEF domain-containing protein
694	 38.38	0	769866..770063	+	65	59713876	-	VF_A0693	-	hypothetical protein
695	 35.30	0	770256..770966	+	236	59713877	-	VF_A0694	-	hexapeptide repeat-containing transferase
696	 43.01	+1	771042..772085	-	347	59713878	guaC	VF_A0695	-	guanosine 5'-monophosphate oxidoreductase
697	 38.93	0	772546..773850	+	434	59713879	-	VF_A0696	-	inosine-guanosine kinase
698	 38.35	0	773927..774205	-	92	59713880	ppiC	VF_A0697	-	peptidyl-prolyl cis-trans isomerase C (rotamase C)
699	 37.79	0	774346..775242	+	298	59713881	cheV3	VF_A0698	-	CheW/CheY hybrid protein CheV3
37.27	MEAN

3.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.