IslandPath Analysis: Vibrio fischeri ES114



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.27   STD DEV: 3.84
Vibrio fischeri ES114 chromosome II, complete sequence - 1..1330333
1175 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
528	 35.53	0	606435..607118	+	227	59713714	-	VF_A0531	-	hypothetical protein
529	 40.28	0	607308..607451	+	47	59713715	-	VF_A0532	-	hypothetical protein
530	 35.44	0	607543..609771	+	742	59713716	-	VF_A0533	-	hypothetical protein
531	 36.84	0	610063..610233	+	56	59713717	-	VF_A0534	-	hypothetical protein
532	 40.89	0	610230..611711	+	493	59713718	hsdM	VF_A0535	-	DNA methylase M
533	 40.44	0	611708..613579	+	623	59713719	-	VF_A0536	-	hypothetical protein
534	 40.49	0	613576..615042	+	488	59713720	-	VF_A0537	-	type I restriction-modification system methylation subunit
535	 34.56	0	615042..616262	+	406	59713721	-	VF_A0538	-	type I restriction-modification system specificity subunit
536	 41.18	+1	616265..619258	+	997	59713722	-	VF_A0539	-	type I restriction-modification system restriction subunit
537	 37.71	0	619283..620608	+	441	59713723	-	VF_A0540	-	hypothetical protein
538	 37.70	0	621001..622650	+	549	59713724	-	VF_A0541	-	hypothetical protein
539	 40.71	0	622655..626719	+	1354	59713725	-	VF_A0542	-	superfamily I DNA helicase
540	 37.30	0	626716..627219	+	167	59713726	-	VF_A0543	-	hypothetical protein
541	 38.58	0	627213..627479	+	88	59713727	-	VF_A0544	-	hypothetical protein
542	 39.89	0	627490..628893	+	467	59713728	-	VF_A0545	-	putative cytoplasmic protein
543	 39.26	0	628883..629860	+	325	59713729	-	VF_A0546	-	hypothetical protein
544	 36.55	0	629853..630443	+	196	59713730	-	VF_A0547	-	hypothetical protein
545	 38.50	0	630681..631880	-	399	59713731	intA	VF_A0548	-	phage family integrase
546	 39.78	0	632237..632686	-	149	59713732	-	VF_A0549	-	putative lipoprotein
547	 40.58	0	632699..634810	-	703	59713733	-	VF_A0550	-	putative cytoplasmic protein
548	 35.96	0	635125..635925	-	266	59713734	-	VF_A0551	-	EAL domain-containing protein
549	 39.61	0	636076..636903	-	275	59713735	-	VF_A0552	-	putative cytoplasmic protein
550	 38.83	0	637049..638431	+	460	59713736	-	VF_A0553	-	ATP-dependent RNA helicase
551	 35.46	0	638577..638858	-	93	59713737	-	VF_A0554	-	putative cytoplasmic protein
552	 36.90	0	638920..639732	-	270	59713738	-	VF_A0555	-	phosphate-binding protein
553	 36.45	0	639795..640595	-	266	59713739	-	VF_A0556	-	hypothetical protein
554	 36.08	0	640722..642434	+	570	59713740	sgrR	VF_A0557	-	DNA-binding transcriptional regulator
555	 36.85	0	642482..643447	-	321	59713741	-	VF_A0558	-	coproporphyrinogen III oxidase
556	 35.96	0	643535..643801	+	88	59713742	-	VF_A0559	-	hypothetical protein
557	 37.00	0	643933..645378	+	481	59713743	-	VF_A0560	-	two component sensor histidine kinase
558	 39.12	0	645353..646009	+	218	59713744	-	VF_A0561	-	two component response regulator
559	 34.76	0	646014..646922	+	302	59713745	-	VF_A0562	-	hypothetical protein
560	 37.04	0	646922..647083	+	53	59713746	-	VF_A0563	-	hypothetical protein
561	 39.75	0	647250..648449	+	399	59713747	-	VF_A0564	-	TraF protein
562	 37.99	0	648528..649064	+	178	59713748	mog	VF_A0565	-	molybdenum cofactor biosynthesis protein
563	 32.44	-1	649096..649320	-	74	59713749	-	VF_A0566	-	hypothetical protein
564	 34.50	0	649637..651601	+	654	59713750	ydaM	VF_A0567	-	GGDEF domain-containing protein
565	 30.86	-1	651702..651782	+	26	172087807	-	VF_A1183	-	hypothetical protein
566	 39.60	0	651891..654569	-	892	59713751	yfiQ	VF_A0568	-	fused acyl-CoA synthetase: NAD(P)-binding subunit/ATP-binding subunit
567	 39.04	0	654794..655354	+	186	59713752	-	VF_A0569	-	hypothetical protein
568	 37.66	0	655406..656398	+	330	59713753	ddlA	VF_A0570	-	D-alanyl-alanine synthetase A
569	 35.08	0	656429..657343	-	304	59713754	-	VF_A0571	-	DNA integration/recombination/invertion protein
570	 34.47	0	657487..657837	+	116	59713755	-	VF_A0572	-	minor tail protein
571	 40.38	0	657877..658188	+	103	59713756	yciH	VF_A0573	-	translation initiation factor Sui1
572	 40.74	0	658717..658824	-	35	59713757	-	VF_A0574	-	hypothetical protein
573	 40.74	0	659275..659382	-	35	59713758	-	VF_A0575	-	hypothetical protein
574	 39.66	0	659901..661085	-	394	59713759	zot	VF_A0576	-	zona occludens toxin
575	 29.12	-2	661082..661366	-	94	59713760	ace	VF_A0577	-	enterotoxin
576	 35.24	0	661373..662578	-	401	59713761	orfU	VF_A0578	-	OrfU
577	 41.46	+1	662694..662939	-	81	172087808	cep	VF_A1184	-	Cep
578	 31.50	-1	663082..663408	-	108	59713763	rstB	VF_A0580	-	RstB2 protein
579	 37.49	0	663411..664565	-	384	59713764	rstA	VF_A0581	-	RstA2 protein
580	 30.06	-1	664687..665022	+	111	59713765	rstR	VF_A0582	-	transcriptional repressor rstR
581	 36.20	0	666012..666290	+	92	172087809	-	VF_A1185	-	hypothetical protein
582	 35.33	0	666343..666492	-	49	172087810	-	VF_A1186	-	hypothetical protein
583	 39.68	0	666784..667350	+	188	59713766	-	VF_A0583	-	hypothetical protein
584	 36.79	0	667426..668004	-	192	59713767	-	VF_A0584	-	hypothetical protein
585	 43.36	+1	668217..669593	-	458	59713768	pntB	VF_A0585	-	pyridine nucleotide transhydrogenase
586	 43.10	+1	669605..671161	-	518	59713769	pntA	VF_A0586	-	NAD(P) transhydrogenase subunit alpha
587	 38.41	0	671420..671695	-	91	59713770	-	VF_A0587	-	transcriptional activator HlyU
588	 37.48	0	671775..672329	-	184	59713771	-	VF_A0588	-	OmpA family domain-containing protein
589	 37.24	0	672439..673563	-	374	59713772	-	VF_A0589	-	integral membrane protein
590	 36.71	0	673567..674691	-	374	59713773	-	VF_A0590	-	daunorubicin resistance transmembrane protein
591	 39.33	0	674711..675694	-	327	59713774	-	VF_A0591	-	multidrug resistance protein A
592	 38.26	0	675699..677057	-	452	59713775	-	VF_A0592	-	type I secretion outer membrane protein
593	 38.10	0	677153..677614	-	153	59713776	luxT	VF_A0593	-	LuxT transcriptional regulator
594	 35.02	0	678072..678368	+	98	59713777	-	VF_A0594	-	hypothetical protein
595	 40.10	0	678438..678644	-	68	59713778	-	VF_A0595	-	cold shock protein
596	 34.31	0	678842..679456	+	204	59713779	-	VF_A0596	-	hypothetical protein
597	 38.35	0	679484..680419	+	311	59713780	-	VF_A0597	-	LysR family transcriptional regulator
598	 36.59	0	680421..681650	-	409	59713781	-	VF_A0598	-	hypothetical protein
599	 39.52	0	681687..682349	+	220	59713782	-	VF_A0599	-	hypothetical protein
600	 37.84	0	682386..682895	-	169	59713783	-	VF_A0600	-	hypothetical protein
601	 37.04	0	682902..683414	-	170	59713784	-	VF_A0601	-	nicotinic acid mononucleotide adenylyltransferase
602	 37.91	0	683569..684399	+	276	59713785	nadE	VF_A0602	-	NAD synthetase
603	 32.98	-1	684396..684680	-	94	59713786	yhbQ	VF_A0603	-	endonuclease
604	 37.77	0	684680..685333	-	217	59713787	yceH	VF_A0604	-	hypothetical protein
605	 39.05	0	685485..685904	+	139	59713788	-	VF_A0605	-	hypothetical protein
606	 37.54	0	686004..686312	+	102	59713789	-	VF_A0606	-	hypothetical protein
607	 37.61	0	686377..686820	-	147	59713790	-	VF_A0607	-	hypothetical protein
608	 38.91	0	686820..687824	-	334	59713791	-	VF_A0608	-	two component response regulator
609	 35.52	0	687960..688325	-	121	59713792	-	VF_A0609	-	hypothetical protein
610	 39.31	0	688651..689202	-	183	59713793	-	VF_A0610	-	hypothetical protein
611	 42.13	+1	689520..690758	+	412	59713794	yhjX	VF_A0611	-	transporter
612	 36.86	0	690868..693222	+	784	59713795	-	VF_A0612	-	9-hexadecenoic acid cis-trans isomerase
613	 34.27	0	693386..693916	+	176	59713796	-	VF_A0613	-	hypothetical protein
614	 34.93	0	693922..694296	-	124	59713797	-	VF_A0614	-	hypothetical protein
615	 36.75	0	694489..695892	-	467	59713798	-	VF_A0615	-	hypothetical protein
616	 32.91	-1	696071..696304	-	77	59713799	-	VF_A0616	-	hypothetical protein
617	 40.62	0	696468..698114	+	548	59713800	-	VF_A0617	-	hypothetical protein
618	 38.03	0	698416..699756	+	446	59713801	-	VF_A0618	-	hypothetical protein
619	 39.76	0	700152..700400	-	82	59713802	-	VF_A0619	-	hypothetical protein
620	 35.96	0	700605..700832	+	75	59713803	-	VF_A0620	-	hypothetical protein
621	 35.03	0	700904..701434	-	176	59713804	-	VF_A0621	-	hypothetical protein
622	 34.03	0	701630..702205	-	191	59713805	-	VF_A0622	-	putative lipoprotein
623	 23.53	-2	702519..702620	-	33	59713806	-	VF_A0623	-	hypothetical protein
624	 36.31	0	703278..703982	-	234	59713807	ygeA	VF_A0624	-	racemase
625	 33.78	0	704117..704566	-	149	59713808	-	VF_A0625	-	hypothetical protein
626	 32.64	-1	704628..705062	-	144	59713809	-	VF_A0626	-	acetyltransferase
627	 31.69	-1	705313..705861	-	182	59713810	-	VF_A0627	-	hypothetical protein
37.27	MEAN

3.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.