IslandPath Analysis: Vibrio fischeri ES114



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.27   STD DEV: 3.84
Vibrio fischeri ES114 chromosome II, complete sequence - 1..1330333
1175 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
481	 38.76	0	556957..558687	-	576	59713667	-	VF_A0484	-	ribosomal large subunit pseudouridine synthase A
482	 39.21	0	558668..560368	-	566	59713668	-	VF_A0485	-	ribosomal large subunit pseudouridine synthase A
483	 34.60	0	560503..560739	-	78	59713669	-	VF_A0486	-	hypothetical protein
484	 38.64	0	560885..561808	-	307	59713670	ompU2	VF_A0487	-	outer membrane protein U paralog, OmpU2
485	 37.21	0	561982..562857	-	291	59713671	-	VF_A0488	-	hypothetical protein
486	 35.48	0	563023..563955	-	310	59713672	-	VF_A0489	-	LysR family transcriptional regulator
487	 35.54	0	564064..565059	+	331	59713673	-	VF_A0490	-	soluble lytic murein transglycosylase
488	 34.93	0	565069..566073	+	334	59713674	-	VF_A0491	-	soluble lytic murein transglycosylase
489	 40.94	0	566145..567248	-	367	59713675	anmK	VF_A0492	-	anhydro-N-acetylmuramic acid kinase
490	 41.47	+1	567421..568416	+	331	59713676	nagZ	VF_A0493	-	beta-hexosaminidase
491	 43.85	+1	568497..569942	-	481	59713677	pykA	VF_A0494	-	pyruvate kinase II
492	 39.79	0	570044..570724	-	226	59713678	ygcF	VF_A0495	-	hypothetical protein
493	 39.75	0	570908..572122	+	404	59713679	dgsA	VF_A0496	-	DNA-binding transcriptional repressor
494	 40.60	0	572200..573204	-	334	59713680	-	VF_A0497	-	L-allo-threonine aldolase
495	 38.00	0	573487..575136	+	549	59713681	ravA	VF_A0498	-	MoxR-like ATPase, regulatory ATPase variant A, RavA
496	 37.82	0	575155..576603	+	482	59713682	viaA	VF_A0499	-	hypothetical protein
497	 40.74	0	576604..576846	-	80	59713683	-	VF_A0500	-	hypothetical protein
498	 38.58	0	576890..577327	-	145	59713684	-	VF_A0501	-	hypothetical protein
499	 37.80	0	577536..578162	+	208	59713685	-	VF_A0502	-	outer membrane protein
500	 35.48	0	578216..578728	-	170	59713686	creA	VF_A0503	-	CreA family protein
501	 34.52	0	579102..579524	+	140	59713687	-	VF_A0504	-	hypothetical protein
502	 35.80	0	579566..580051	+	161	59713688	-	VF_A0505	-	hypothetical protein
503	 35.57	0	580074..581819	+	581	59713689	-	VF_A0506	-	two component response regulator
504	 37.09	0	581905..583128	-	407	59713690	gltS	VF_A0507	-	glutamate transporter
505	 37.75	0	583349..584344	-	331	59713691	-	VF_A0508	-	hypothetical protein
506	 38.70	0	584521..586347	-	608	59713692	-	VF_A0509	-	multidrug resistance ABC transporter ATP-binding and permease protein
507	 37.25	0	586538..587506	+	322	59713693	-	VF_A0510	-	low-affinity zinc transport protein
508	 40.32	0	587574..588518	-	314	59713694	-	VF_A0511	-	ribosomal biogenesis GTPase
509	 39.54	0	588898..589203	+	101	59713695	-	VF_A0512	-	Phage integrase family protein
510	 40.44	0	589236..589418	+	60	59713696	-	VF_A0513	-	DNA integration/recombination/invertion protein
511	 24.00	-2	589544..590497	-	317	59713697	-	VF_A0514	-	hypothetical protein
512	 30.28	-1	590932..591585	+	217	59713698	yagK	VF_A0515	-	prophage protein
513	 36.18	0	591629..593068	-	479	59713699	-	VF_A0516	-	putative lipoprotein
514	 32.94	-1	593087..593851	-	254	59713700	-	VF_A0517	-	hypothetical protein
515	 37.50	0	594094..594429	-	111	59713701	-	VF_A0518	-	hypothetical protein
516	 41.11	+1	594900..595799	-	299	59713702	-	VF_A0519	-	hypothetical protein
517	 39.74	0	595895..596362	-	155	59713703	-	VF_A0520	-	hypothetical protein
518	 41.44	+1	596427..596870	-	147	59713704	-	VF_A0521	-	hypothetical protein
519	 41.77	+1	596870..597343	-	157	59713705	-	VF_A0522	-	DNA repair protein RadC
520	 41.15	+1	597490..597681	+	63	59713706	-	VF_A0523	-	DNA-binding protein
521	 42.73	+1	597774..598220	+	148	59713707	-	VF_A0524	-	ribonuclease H
522	 26.95	-2	598645..599412	+	255	59713708	-	VF_A0525	-	AraC family transcriptional regulator
523	 24.14	-2	599443..600312	+	289	59713709	-	VF_A0526	-	GGDEF domain-containing protein
524	 26.38	-2	600595..602205	+	536	59713710	-	VF_A0527	-	methyl-accepting chemotaxis protein
525	 30.47	-1	602634..604277	+	547	59713711	-	VF_A0528	-	methyl-accepting chemotaxis protein
526	 36.60	0	604839..605573	+	244	59713712	pnuC	VF_A0529	-	nicotinamide mononucleotide transporter
527	 40.00	0	605570..606304	+	244	59713713	-	VF_A0530	-	uridine phosphorylase
528	 35.53	0	606435..607118	+	227	59713714	-	VF_A0531	-	hypothetical protein
529	 40.28	0	607308..607451	+	47	59713715	-	VF_A0532	-	hypothetical protein
530	 35.44	0	607543..609771	+	742	59713716	-	VF_A0533	-	hypothetical protein
531	 36.84	0	610063..610233	+	56	59713717	-	VF_A0534	-	hypothetical protein
532	 40.89	0	610230..611711	+	493	59713718	hsdM	VF_A0535	-	DNA methylase M
533	 40.44	0	611708..613579	+	623	59713719	-	VF_A0536	-	hypothetical protein
534	 40.49	0	613576..615042	+	488	59713720	-	VF_A0537	-	type I restriction-modification system methylation subunit
535	 34.56	0	615042..616262	+	406	59713721	-	VF_A0538	-	type I restriction-modification system specificity subunit
536	 41.18	+1	616265..619258	+	997	59713722	-	VF_A0539	-	type I restriction-modification system restriction subunit
537	 37.71	0	619283..620608	+	441	59713723	-	VF_A0540	-	hypothetical protein
538	 37.70	0	621001..622650	+	549	59713724	-	VF_A0541	-	hypothetical protein
539	 40.71	0	622655..626719	+	1354	59713725	-	VF_A0542	-	superfamily I DNA helicase
540	 37.30	0	626716..627219	+	167	59713726	-	VF_A0543	-	hypothetical protein
541	 38.58	0	627213..627479	+	88	59713727	-	VF_A0544	-	hypothetical protein
542	 39.89	0	627490..628893	+	467	59713728	-	VF_A0545	-	putative cytoplasmic protein
543	 39.26	0	628883..629860	+	325	59713729	-	VF_A0546	-	hypothetical protein
544	 36.55	0	629853..630443	+	196	59713730	-	VF_A0547	-	hypothetical protein
545	 38.50	0	630681..631880	-	399	59713731	intA	VF_A0548	-	phage family integrase
546	 39.78	0	632237..632686	-	149	59713732	-	VF_A0549	-	putative lipoprotein
547	 40.58	0	632699..634810	-	703	59713733	-	VF_A0550	-	putative cytoplasmic protein
548	 35.96	0	635125..635925	-	266	59713734	-	VF_A0551	-	EAL domain-containing protein
549	 39.61	0	636076..636903	-	275	59713735	-	VF_A0552	-	putative cytoplasmic protein
550	 38.83	0	637049..638431	+	460	59713736	-	VF_A0553	-	ATP-dependent RNA helicase
551	 35.46	0	638577..638858	-	93	59713737	-	VF_A0554	-	putative cytoplasmic protein
552	 36.90	0	638920..639732	-	270	59713738	-	VF_A0555	-	phosphate-binding protein
553	 36.45	0	639795..640595	-	266	59713739	-	VF_A0556	-	hypothetical protein
554	 36.08	0	640722..642434	+	570	59713740	sgrR	VF_A0557	-	DNA-binding transcriptional regulator
555	 36.85	0	642482..643447	-	321	59713741	-	VF_A0558	-	coproporphyrinogen III oxidase
556	 35.96	0	643535..643801	+	88	59713742	-	VF_A0559	-	hypothetical protein
557	 37.00	0	643933..645378	+	481	59713743	-	VF_A0560	-	two component sensor histidine kinase
558	 39.12	0	645353..646009	+	218	59713744	-	VF_A0561	-	two component response regulator
559	 34.76	0	646014..646922	+	302	59713745	-	VF_A0562	-	hypothetical protein
560	 37.04	0	646922..647083	+	53	59713746	-	VF_A0563	-	hypothetical protein
561	 39.75	0	647250..648449	+	399	59713747	-	VF_A0564	-	TraF protein
562	 37.99	0	648528..649064	+	178	59713748	mog	VF_A0565	-	molybdenum cofactor biosynthesis protein
563	 32.44	-1	649096..649320	-	74	59713749	-	VF_A0566	-	hypothetical protein
564	 34.50	0	649637..651601	+	654	59713750	ydaM	VF_A0567	-	GGDEF domain-containing protein
565	 30.86	-1	651702..651782	+	26	172087807	-	VF_A1183	-	hypothetical protein
566	 39.60	0	651891..654569	-	892	59713751	yfiQ	VF_A0568	-	fused acyl-CoA synthetase: NAD(P)-binding subunit/ATP-binding subunit
567	 39.04	0	654794..655354	+	186	59713752	-	VF_A0569	-	hypothetical protein
568	 37.66	0	655406..656398	+	330	59713753	ddlA	VF_A0570	-	D-alanyl-alanine synthetase A
569	 35.08	0	656429..657343	-	304	59713754	-	VF_A0571	-	DNA integration/recombination/invertion protein
570	 34.47	0	657487..657837	+	116	59713755	-	VF_A0572	-	minor tail protein
571	 40.38	0	657877..658188	+	103	59713756	yciH	VF_A0573	-	translation initiation factor Sui1
572	 40.74	0	658717..658824	-	35	59713757	-	VF_A0574	-	hypothetical protein
573	 40.74	0	659275..659382	-	35	59713758	-	VF_A0575	-	hypothetical protein
574	 39.66	0	659901..661085	-	394	59713759	zot	VF_A0576	-	zona occludens toxin
575	 29.12	-2	661082..661366	-	94	59713760	ace	VF_A0577	-	enterotoxin
576	 35.24	0	661373..662578	-	401	59713761	orfU	VF_A0578	-	OrfU
577	 41.46	+1	662694..662939	-	81	172087808	cep	VF_A1184	-	Cep
578	 31.50	-1	663082..663408	-	108	59713763	rstB	VF_A0580	-	RstB2 protein
579	 37.49	0	663411..664565	-	384	59713764	rstA	VF_A0581	-	RstA2 protein
580	 30.06	-1	664687..665022	+	111	59713765	rstR	VF_A0582	-	transcriptional repressor rstR
37.27	MEAN

3.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.