IslandPath Analysis: Vibrio fischeri ES114



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.27   STD DEV: 3.84
Vibrio fischeri ES114 chromosome II, complete sequence - 1..1330333
1175 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
433	 35.92	0	497694..498311	+	205	59713617	-	VF_A0434	-	DnaJ-related protein
434	 37.93	0	498318..499667	-	449	59713618	-	VF_A0435	-	two component sensor histidine kinase
435	 36.14	0	499648..500325	-	225	59713619	-	VF_A0436	-	putative transcriptional regulatory protein
436	 36.07	0	500566..500967	+	133	59713620	-	VF_A0437	-	hypothetical protein
437	 40.67	0	501042..502499	-	485	59713621	nagE2	VF_A0438	-	fused N-acetyl glucosamine specific PTS enzyme: IIC and IIB components
438	 40.34	0	502654..503838	-	394	59713622	nnrS	VF_A0439	-	nitrite and/or nitric oxide reductase
439	 39.06	0	504037..504891	+	284	59713623	-	VF_A0440	-	esterase/lipase
440	 36.32	0	504985..506022	-	345	59713624	-	VF_A0441	-	hypothetical protein
441	 36.36	0	506224..506619	+	131	59713625	-	VF_A0442	-	hypothetical protein
442	 37.30	0	506795..508129	+	444	59713626	cusC	VF_A0443	-	copper/silver resistance outer membrane protein
443	 39.46	0	508140..509609	+	489	59713627	cusB	VF_A0444	-	copper/silver efflux system, membrane fusion protein
444	 41.12	+1	509606..512725	+	1039	59713628	cusA	VF_A0445	-	copper/silver efflux system, membrane component
445	 39.45	0	512823..513329	+	168	59713629	cusF	VF_A0446	-	copper-binding protein
446	 37.75	0	513408..515036	-	542	59713630	-	VF_A0447	-	methyl-accepting chemotaxis protein
447	 37.81	0	515255..516883	-	542	59713631	-	VF_A0448	-	methyl-accepting chemotaxis protein
448	 33.74	0	517067..517312	-	81	59713632	-	VF_A0449	-	hypothetical protein
449	 42.40	+1	517423..518955	-	510	59713633	hutH	VF_A0450	-	histidine ammonia-lyase
450	 43.89	+1	518997..520691	-	564	59713634	hutU	VF_A0451	-	urocanate hydratase
451	 39.79	0	520710..521762	-	350	59713635	hutG	VF_A0452	-	formimidoylglutamase
452	 40.51	0	521737..522963	-	408	59713636	hutI	VF_A0453	-	imidazolonepropionase
453	 34.90	0	523147..523848	-	233	59713637	hutC	VF_A0454	-	histidine utilization repressor
454	 35.05	0	523991..524629	+	212	59713638	-	VF_A0455	-	hypothetical protein
455	 39.45	0	524697..525170	-	157	59713639	-	VF_A0456	-	peptidyl-prolyl cis-trans isomerase
456	 38.21	0	525195..525830	-	211	59713640	-	VF_A0457	-	putative lipoprotein
457	 38.05	0	525937..526827	-	296	59713641	-	VF_A0458	-	hypothetical protein
458	 41.55	+1	526917..530372	-	1151	172087806	mfd	VF_A0460	-	transcription-repair coupling factor
459	 38.07	0	530388..530957	-	189	59713644	-	VF_A0461	-	hypothetical protein
460	 40.86	0	531125..532333	+	402	59713645	lolC	VF_A0462	-	outer membrane-specific lipoprotein transporter subunit
461	 41.98	+1	532326..533042	+	238	59713646	lolD	VF_A0463	-	outer membrane-specific lipoprotein transporter subunit
462	 41.12	+1	533042..534286	+	414	59713647	lolE	VF_A0464	-	outer membrane-specific lipoprotein transporter subunit LolE
463	 34.52	0	534451..535800	+	449	59713648	-	VF_A0465	-	hypothetical protein
464	 35.91	0	537118..538164	+	348	59713650	-	VF_A0467	-	permease
465	 38.19	0	538302..539804	+	500	59713651	zwf	VF_A0468	-	glucose-6-phosphate 1-dehydrogenase
466	 37.76	0	539801..540523	+	240	59713652	-	VF_A0469	-	6-phosphogluconolactonase
467	 38.99	0	540560..542008	+	482	59713653	gnd	VF_A0470	-	6-phosphogluconate dehydrogenase
468	 37.39	0	542082..542747	-	221	59713654	yqjA	VF_A0471	-	inner membrane protein
469	 34.13	0	543371..543994	+	207	59713655	-	VF_A0472	-	transporter
470	 27.45	-2	544305..544916	+	203	59713656	tcpP	VF_A0473	-	transcriptional regulatory protein TcpP
471	 25.64	-2	544913..545302	+	129	59713657	tcpH	VF_A0474	-	TcpH protein
472	 29.79	-1	545355..547046	+	563	59713658	-	VF_A0475	-	GGDEF domain-containing protein
473	 27.92	-2	547097..548389	+	430	59713659	-	VF_A0476	-	GGDEF domain-containing protein
474	 36.36	0	548510..549862	+	450	59713660	-	VF_A0477	-	hypothetical protein
475	 34.86	0	549862..551175	+	437	59713661	-	VF_A0478	-	N-acetylglucosaminyltransferase
476	 32.85	-1	551181..552224	+	347	59713662	-	VF_A0479	-	hypothetical protein
477	 23.29	-2	552293..552541	+	82	59713663	-	VF_A0480	-	hypothetical protein
478	 32.06	-1	552592..554235	+	547	59713664	-	VF_A0481	-	methyl-accepting chemotaxis protein
479	 36.93	0	554294..555517	-	407	59713665	-	VF_A0482	-	sodium/glutamate symporter
480	 41.89	+1	555673..556770	-	365	59713666	-	VF_A0483	-	rod shape-determining protein RodA
481	 38.76	0	556957..558687	-	576	59713667	-	VF_A0484	-	ribosomal large subunit pseudouridine synthase A
482	 39.21	0	558668..560368	-	566	59713668	-	VF_A0485	-	ribosomal large subunit pseudouridine synthase A
483	 34.60	0	560503..560739	-	78	59713669	-	VF_A0486	-	hypothetical protein
484	 38.64	0	560885..561808	-	307	59713670	ompU2	VF_A0487	-	outer membrane protein U paralog, OmpU2
485	 37.21	0	561982..562857	-	291	59713671	-	VF_A0488	-	hypothetical protein
486	 35.48	0	563023..563955	-	310	59713672	-	VF_A0489	-	LysR family transcriptional regulator
487	 35.54	0	564064..565059	+	331	59713673	-	VF_A0490	-	soluble lytic murein transglycosylase
488	 34.93	0	565069..566073	+	334	59713674	-	VF_A0491	-	soluble lytic murein transglycosylase
489	 40.94	0	566145..567248	-	367	59713675	anmK	VF_A0492	-	anhydro-N-acetylmuramic acid kinase
490	 41.47	+1	567421..568416	+	331	59713676	nagZ	VF_A0493	-	beta-hexosaminidase
491	 43.85	+1	568497..569942	-	481	59713677	pykA	VF_A0494	-	pyruvate kinase II
492	 39.79	0	570044..570724	-	226	59713678	ygcF	VF_A0495	-	hypothetical protein
493	 39.75	0	570908..572122	+	404	59713679	dgsA	VF_A0496	-	DNA-binding transcriptional repressor
494	 40.60	0	572200..573204	-	334	59713680	-	VF_A0497	-	L-allo-threonine aldolase
495	 38.00	0	573487..575136	+	549	59713681	ravA	VF_A0498	-	MoxR-like ATPase, regulatory ATPase variant A, RavA
496	 37.82	0	575155..576603	+	482	59713682	viaA	VF_A0499	-	hypothetical protein
497	 40.74	0	576604..576846	-	80	59713683	-	VF_A0500	-	hypothetical protein
498	 38.58	0	576890..577327	-	145	59713684	-	VF_A0501	-	hypothetical protein
499	 37.80	0	577536..578162	+	208	59713685	-	VF_A0502	-	outer membrane protein
500	 35.48	0	578216..578728	-	170	59713686	creA	VF_A0503	-	CreA family protein
501	 34.52	0	579102..579524	+	140	59713687	-	VF_A0504	-	hypothetical protein
502	 35.80	0	579566..580051	+	161	59713688	-	VF_A0505	-	hypothetical protein
503	 35.57	0	580074..581819	+	581	59713689	-	VF_A0506	-	two component response regulator
504	 37.09	0	581905..583128	-	407	59713690	gltS	VF_A0507	-	glutamate transporter
505	 37.75	0	583349..584344	-	331	59713691	-	VF_A0508	-	hypothetical protein
506	 38.70	0	584521..586347	-	608	59713692	-	VF_A0509	-	multidrug resistance ABC transporter ATP-binding and permease protein
507	 37.25	0	586538..587506	+	322	59713693	-	VF_A0510	-	low-affinity zinc transport protein
508	 40.32	0	587574..588518	-	314	59713694	-	VF_A0511	-	ribosomal biogenesis GTPase
509	 39.54	0	588898..589203	+	101	59713695	-	VF_A0512	-	Phage integrase family protein
510	 40.44	0	589236..589418	+	60	59713696	-	VF_A0513	-	DNA integration/recombination/invertion protein
511	 24.00	-2	589544..590497	-	317	59713697	-	VF_A0514	-	hypothetical protein
512	 30.28	-1	590932..591585	+	217	59713698	yagK	VF_A0515	-	prophage protein
513	 36.18	0	591629..593068	-	479	59713699	-	VF_A0516	-	putative lipoprotein
514	 32.94	-1	593087..593851	-	254	59713700	-	VF_A0517	-	hypothetical protein
515	 37.50	0	594094..594429	-	111	59713701	-	VF_A0518	-	hypothetical protein
516	 41.11	+1	594900..595799	-	299	59713702	-	VF_A0519	-	hypothetical protein
517	 39.74	0	595895..596362	-	155	59713703	-	VF_A0520	-	hypothetical protein
518	 41.44	+1	596427..596870	-	147	59713704	-	VF_A0521	-	hypothetical protein
519	 41.77	+1	596870..597343	-	157	59713705	-	VF_A0522	-	DNA repair protein RadC
520	 41.15	+1	597490..597681	+	63	59713706	-	VF_A0523	-	DNA-binding protein
521	 42.73	+1	597774..598220	+	148	59713707	-	VF_A0524	-	ribonuclease H
522	 26.95	-2	598645..599412	+	255	59713708	-	VF_A0525	-	AraC family transcriptional regulator
523	 24.14	-2	599443..600312	+	289	59713709	-	VF_A0526	-	GGDEF domain-containing protein
524	 26.38	-2	600595..602205	+	536	59713710	-	VF_A0527	-	methyl-accepting chemotaxis protein
525	 30.47	-1	602634..604277	+	547	59713711	-	VF_A0528	-	methyl-accepting chemotaxis protein
526	 36.60	0	604839..605573	+	244	59713712	pnuC	VF_A0529	-	nicotinamide mononucleotide transporter
527	 40.00	0	605570..606304	+	244	59713713	-	VF_A0530	-	uridine phosphorylase
528	 35.53	0	606435..607118	+	227	59713714	-	VF_A0531	-	hypothetical protein
529	 40.28	0	607308..607451	+	47	59713715	-	VF_A0532	-	hypothetical protein
530	 35.44	0	607543..609771	+	742	59713716	-	VF_A0533	-	hypothetical protein
531	 36.84	0	610063..610233	+	56	59713717	-	VF_A0534	-	hypothetical protein
532	 40.89	0	610230..611711	+	493	59713718	hsdM	VF_A0535	-	DNA methylase M
37.27	MEAN

3.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.