IslandPathversion 1.0

IslandPath Analysis: Vibrio fischeri ES114



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.27 STD DEV: 3.84
Vibrio fischeri ES114 chromosome II, complete sequence - 1..1330333
1175 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
312	 38.67	0	346861..347085	+	74	59713495	pspB	VF_A0312	-	phage shock protein B
313	 40.57	0	347085..347471	+	128	59713496	pspC	VF_A0313	-	PspC transcriptional regulator, toxin of PspCB toxin-antitoxin pair
314	 38.98	0	347567..348964	+	465	59713497	ycjX	VF_A0314	-	hypothetical protein
315	 38.30	0	348961..349986	+	341	59713498	ycjF	VF_A0315	-	hypothetical protein
316	 38.68	0	350247..351125	+	292	59713499	thiD	VF_A0316	-	phosphomethylpyrimidine kinase
317	 40.56	0	351118..351864	+	248	59713500	-	VF_A0317	-	hydroxymethylpyrimidine transport ATP-binding protein
318	 40.42	0	351857..352675	+	272	59713501	tauC	VF_A0318	-	taurine transporter permease subunit
319	 39.14	0	352703..353650	+	315	59713502	-	VF_A0319	-	hydroxymethylpyrimidine-binding protein
320	 39.37	0	353669..354331	+	220	59713503	-	VF_A0320	-	transcriptional activator TenA
321	 41.67	+1	354364..355167	+	267	59713504	thiM	VF_A0321	-	hydroxyethylthiazole kinase
322	 39.75	0	355178..355816	+	212	59713505	-	VF_A0322	-	thiamine-phosphate pyrophosphorylase
323	 31.24	-1	355822..356634	-	270	59713506	-	VF_A0323	-	GGDEF domain-containing protein
324	 36.13	0	356822..358108	-	428	59713507	-	VF_A0324	-	thiol:disulfide interchange protein DsbD
325	 38.61	0	358786..360471	+	561	59713508	-	VF_A0325	-	methyl-accepting chemotaxis protein
326	 36.19	0	360529..361227	-	232	59713509	-	VF_A0326	-	hypothetical protein
327	 33.33	-1	361284..361454	+	56	59713510	-	VF_A0327	-	hypothetical protein
328	 43.05	+1	361620..362288	-	222	59713511	yiaD	VF_A0328	-	outer membrane lipoprotein
329	 38.68	0	362440..363000	-	186	59713512	-	VF_A0329	-	hypothetical protein
330	 36.99	0	363003..364505	-	500	59713513	-	VF_A0330	-	hypothetical protein
331	 37.94	0	364534..366813	-	759	59713514	-	VF_A0331	-	hypothetical protein
332	 37.92	0	366823..368958	-	711	59713515	-	VF_A0332	-	TonB system receptor, putative
333	 34.48	0	368975..370978	-	667	59713516	ptrB	VF_A0333	-	protease II
334	 34.30	0	371218..371736	-	172	59713517	-	VF_A0334	-	MarR family transcriptional regulator
335	 39.95	0	371836..372258	+	140	59713518	-	VF_A0335	-	osmotically inducible protein C
336	 40.66	0	372277..372672	+	131	59713519	-	VF_A0336	-	hypothetical protein
337	 40.48	0	372754..375132	-	792	172087800	-	VF_A0338	-	putative glucosyl hydrolase precursor
338	 40.66	0	375263..376258	-	331	59713522	ygjJ	VF_A0339	-	hypothetical protein
339	 40.42	0	376622..378046	-	474	59713523	-	VF_A0340	-	amino acid permease
340	 25.83	-2	378811..378930	-	39	59713524	-	VF_A0341	-	hypothetical protein
341	 30.56	-1	378969..380300	+	443	59713525	-	VF_A0342	-	GGDEF domain-containing protein
342	 29.04	-2	380290..381618	+	442	59713526	-	VF_A0343	-	GGDEF domain-containing protein
343	 29.98	-1	381624..383054	+	476	59713527	-	VF_A0344	-	EAL domain-containing protein
344	 39.06	0	383125..384555	-	476	59713528	ygjI	VF_A0345	-	transporter
345	 38.41	0	384729..385181	-	150	59713529	ebgC	VF_A0346	-	cryptic beta-D-galactosidase subunit beta
346	 40.84	0	385181..388282	-	1033	59713530	ebgA	VF_A0347	-	cryptic beta-D-galactosidase subunit alpha
347	 37.15	0	388632..389627	-	331	59713531	ebgR	VF_A0348	-	DNA-binding transcriptional repressor EbgR
348	 37.31	0	389729..390508	-	259	59713532	-	VF_A0349	-	DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease)
349	 37.74	0	390512..392371	-	619	59713533	-	VF_A0350	-	cyclic nucleotide binding protein/CBS domain-containing proteins
350	 39.71	0	392512..394143	-	543	59713534	yidK	VF_A0351	-	transporter
351	 41.64	+1	394429..395439	+	336	59713535	galE	VF_A0352	-	UDP-galactose-4-epimerase
352	 41.98	+1	395577..396629	+	350	172087801	galT	VF_A0353	-	galactose-1-phosphate uridylyltransferase
353	 42.42	+1	396823..397977	+	384	59713538	galK	VF_A0355	-	galactokinase
354	 39.74	0	397987..399048	+	353	172087802	galM	VF_A0356	-	aldose 1-epimerase
355	 41.79	+1	399122..402172	-	1016	59713540	-	VF_A0357	-	acriflavin resistance plasma membrane protein
356	 40.43	0	402176..403288	-	370	59713541	-	VF_A0358	-	acriflavin resistance periplasmic protein
357	 36.60	0	403459..404070	+	203	59713542	-	VF_A0359	-	TetR family transcriptional regulator
358	 35.41	0	404218..406812	+	864	59713543	-	VF_A0360	-	sensor histidine kinase
359	 37.54	0	406842..407840	-	332	59713544	galR	VF_A0361	-	DNA-binding transcriptional repressor
360	 37.24	0	407971..408303	+	110	59713545	ygjH	VF_A0362	-	hypothetical protein
361	 39.30	0	408563..410071	+	502	59713546	-	VF_A0363	-	sodium/proton-dependent alanine carrier protein
362	 37.66	0	410151..410543	+	130	59713547	-	VF_A0364	-	transporter
363	 39.37	0	410624..410971	+	115	59713548	-	VF_A0365	-	translation initiation inhibitor
364	 37.81	0	411335..412651	+	438	59713549	-	VF_A0366	-	branched-chain amino acid transport system II carrier protein
365	 36.90	0	412725..413621	+	298	59713550	-	VF_A0367	-	deacetylase
366	 30.19	-1	413840..415525	+	561	59713551	-	VF_A0368	-	hypothetical protein
367	 35.88	0	415806..416237	+	143	59713552	-	VF_A0369	-	PTS system, fructose-like-1 IIA component
368	 41.74	+1	416255..417658	+	467	59713553	-	VF_A0370	-	PTS system, fructose-like enzyme IIC component
369	 36.72	0	417813..418373	-	186	59713554	-	VF_A0371	-	hypothetical protein
370	 36.43	0	418805..420064	+	419	59713555	ybdG	VF_A0372	-	mechanosensitive channel
371	 34.27	0	420219..421493	+	424	59713556	-	VF_A0373	-	mechanosensitive ion channel
372	 38.47	0	421737..423041	+	434	59713557	-	VF_A0374	-	ATP-dependent RNA helicase
373	 38.23	0	423316..424194	+	292	59713558	-	VF_A0375	-	hypothetical protein
374	 40.36	0	424198..425322	+	374	59713559	-	VF_A0376	-	hypothetical protein
375	 36.47	0	425333..426385	+	350	59713560	-	VF_A0377	-	hypothetical protein
376	 40.45	0	426464..428065	-	533	59713561	-	VF_A0378	-	glycine betaine transporter
377	 38.82	0	428255..429385	-	376	59713562	yiaV	VF_A0379	-	membrane fusion protein (MFP) component of efflux pump, signal anchor
378	 39.37	0	429385..429765	-	126	59713563	yiaW	VF_A0380	-	inner membrane protein
379	 37.84	0	429932..431086	-	384	59713564	-	VF_A0381	-	GGDEF domain-containing protein
380	 29.94	-1	431076..431252	+	58	172087803	-	VF_A1180	-	hypothetical protein
381	 34.44	0	431309..431668	+	119	59713565	-	VF_A0382	-	hypothetical protein
382	 39.75	0	431738..433780	-	680	59713566	rnb	VF_A0383	-	exoribonuclease II
383	 45.09	+2	434104..436008	+	634	59713567	deaD	VF_A0384	-	ATP-dependent RNA helicase
384	 33.15	-1	436289..436825	+	178	59713568	speG	VF_A0385	-	spermidine N1-acetyltransferase
385	 39.34	0	436886..438349	-	487	59713569	-	VF_A0386	-	formate/nitrite transporter family protein
386	 38.27	0	438535..439446	+	303	59713570	-	VF_A0387	-	LysR family transcriptional regulator
387	 32.45	-1	439542..440222	+	226	59713571	-	VF_A0388	-	hypothetical protein
388	 38.69	0	440416..442281	+	621	59713572	-	VF_A0389	-	methyl-accepting chemotaxis protein
389	 37.40	0	442353..443213	-	286	59713573	-	VF_A0390	-	amino acid ABC transporter permease protein
390	 39.01	0	443217..444026	-	269	59713574	-	VF_A0391	-	ABC transporter amino acid-binding protein
391	 37.23	0	444041..444835	-	264	59713575	glnP	VF_A0392	-	amino acid ABC transporter permease protein
392	 37.88	0	444837..445583	-	248	59713576	-	VF_A0393	-	amino acid transport ATP-binding protein
393	 40.17	0	445832..446884	+	350	59713577	aroG	VF_A0394	-	phospho-2-dehydro-3-deoxyheptonate aldolase
394	 38.29	0	446935..448569	-	544	59713578	ybjD	VF_A0395	-	hypothetical protein
395	 36.90	0	448796..450535	+	579	59713579	-	VF_A0396	-	5'-nucleotidase
396	 34.92	0	450997..451185	+	62	59713580	-	VF_A0397	-	hypothetical protein
397	 34.34	0	451254..452837	-	527	59713581	-	VF_A0398	-	GGDEF domain-containing protein
398	 36.53	0	452839..454308	-	489	59713582	-	VF_A0399	-	hypothetical protein
399	 41.79	+1	454430..455410	-	326	59713583	lsrR	VF_A0400	-	transcriptional repressor
400	 39.66	0	455419..456888	-	489	59713584	-	VF_A0401	-	hypothetical protein
401	 41.35	+1	456946..457656	-	236	59713585	deoD2	VF_A0402	-	purine nucleoside phosphorylase
402	 38.16	0	457990..458652	+	220	59713586	-	VF_A0403	-	potassium uptake protein KtrA
403	 38.24	0	458649..460013	+	454	59713587	-	VF_A0404	-	potassium uptake protein KtrB
404	 38.18	0	460264..461337	-	357	59713588	ynaI	VF_A0405	-	inner membrane protein
405	 35.94	0	461356..462006	-	216	59713589	-	VF_A0406	-	hydrogenase cytochrome b-type
406	 37.72	0	462022..462477	-	151	59713590	-	VF_A0407	-	cytochrome c'
407	 35.23	0	462673..463200	+	175	59713591	-	VF_A0408	-	phosphohydrolase (MutT/nudix family protein)
408	 35.14	0	463190..463411	+	73	59713592	ypeB	VF_A0409	-	hypothetical protein
409	 38.53	0	463483..463809	-	108	59713593	-	VF_A0410	-	hypothetical protein
410	 38.36	0	464061..464975	+	304	59713594	ydhF	VF_A0411	-	oxidoreductase
411	 40.04	0	465059..466087	-	342	59713595	pyrC	VF_A0412	-	dihydroorotase
37.27	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.