version 1.0
Vibrio fischeri ES114 chromosome II, complete sequence - 1..1330333 1175 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 299 42.85 +1 328854..331712 + 952 59713482 torA VF_A0299 - trimethylamine N-oxide (TMAO) reductase I, catalytic subunit 300 34.89 0 331950..333935 + 661 59713483 - VF_A0300 - methyl-accepting chemotaxis protein 301 38.39 0 334332..336071 + 579 59713484 - VF_A0301 - alpha-galactosidase 302 32.58 -1 336291..338270 + 659 59713485 - VF_A0302 - methyl-accepting chemotaxis protein 303 30.61 -1 338260..338406 + 48 59713486 - VF_A0303 - hypothetical protein 304 28.37 -2 338455..339582 - 375 172087799 - VF_A0304 - hypothetical protein 305 38.91 0 339592..340416 - 274 59713488 sapF VF_A0305 - peptide transport system ATP-binding protein SapF 306 42.01 +1 340400..341413 - 337 59713489 sapD VF_A0306 - peptide transport system ATP-binding protein SapD 307 40.20 0 341413..342300 - 295 59713490 sapC VF_A0307 - peptide transport system permease protein SapC 308 37.45 0 342287..343234 - 315 59713491 sapB VF_A0308 - peptide transport system permease protein SapB 309 38.13 0 343234..344859 - 541 59713492 sapA VF_A0309 - peptide transport protein SapA 310 37.84 0 344937..345956 - 339 59713493 pspF VF_A0310 - DNA-binding transcriptional activator 311 35.89 0 346132..346797 + 221 59713494 pspA VF_A0311 - regulatory protein for phage-shock-protein operon 312 38.67 0 346861..347085 + 74 59713495 pspB VF_A0312 - phage shock protein B 313 40.57 0 347085..347471 + 128 59713496 pspC VF_A0313 - PspC transcriptional regulator, toxin of PspCB toxin-antitoxin pair 314 38.98 0 347567..348964 + 465 59713497 ycjX VF_A0314 - hypothetical protein 315 38.30 0 348961..349986 + 341 59713498 ycjF VF_A0315 - hypothetical protein 316 38.68 0 350247..351125 + 292 59713499 thiD VF_A0316 - phosphomethylpyrimidine kinase 317 40.56 0 351118..351864 + 248 59713500 - VF_A0317 - hydroxymethylpyrimidine transport ATP-binding protein 318 40.42 0 351857..352675 + 272 59713501 tauC VF_A0318 - taurine transporter permease subunit 319 39.14 0 352703..353650 + 315 59713502 - VF_A0319 - hydroxymethylpyrimidine-binding protein 320 39.37 0 353669..354331 + 220 59713503 - VF_A0320 - transcriptional activator TenA 321 41.67 +1 354364..355167 + 267 59713504 thiM VF_A0321 - hydroxyethylthiazole kinase 322 39.75 0 355178..355816 + 212 59713505 - VF_A0322 - thiamine-phosphate pyrophosphorylase 323 31.24 -1 355822..356634 - 270 59713506 - VF_A0323 - GGDEF domain-containing protein 324 36.13 0 356822..358108 - 428 59713507 - VF_A0324 - thiol:disulfide interchange protein DsbD 325 38.61 0 358786..360471 + 561 59713508 - VF_A0325 - methyl-accepting chemotaxis protein 326 36.19 0 360529..361227 - 232 59713509 - VF_A0326 - hypothetical protein 327 33.33 -1 361284..361454 + 56 59713510 - VF_A0327 - hypothetical protein 328 43.05 +1 361620..362288 - 222 59713511 yiaD VF_A0328 - outer membrane lipoprotein 329 38.68 0 362440..363000 - 186 59713512 - VF_A0329 - hypothetical protein 330 36.99 0 363003..364505 - 500 59713513 - VF_A0330 - hypothetical protein 331 37.94 0 364534..366813 - 759 59713514 - VF_A0331 - hypothetical protein 332 37.92 0 366823..368958 - 711 59713515 - VF_A0332 - TonB system receptor, putative 333 34.48 0 368975..370978 - 667 59713516 ptrB VF_A0333 - protease II 334 34.30 0 371218..371736 - 172 59713517 - VF_A0334 - MarR family transcriptional regulator 335 39.95 0 371836..372258 + 140 59713518 - VF_A0335 - osmotically inducible protein C 336 40.66 0 372277..372672 + 131 59713519 - VF_A0336 - hypothetical protein 337 40.48 0 372754..375132 - 792 172087800 - VF_A0338 - putative glucosyl hydrolase precursor 338 40.66 0 375263..376258 - 331 59713522 ygjJ VF_A0339 - hypothetical protein 339 40.42 0 376622..378046 - 474 59713523 - VF_A0340 - amino acid permease 340 25.83 -2 378811..378930 - 39 59713524 - VF_A0341 - hypothetical protein 341 30.56 -1 378969..380300 + 443 59713525 - VF_A0342 - GGDEF domain-containing protein 342 29.04 -2 380290..381618 + 442 59713526 - VF_A0343 - GGDEF domain-containing protein 343 29.98 -1 381624..383054 + 476 59713527 - VF_A0344 - EAL domain-containing protein 344 39.06 0 383125..384555 - 476 59713528 ygjI VF_A0345 - transporter 345 38.41 0 384729..385181 - 150 59713529 ebgC VF_A0346 - cryptic beta-D-galactosidase subunit beta 346 40.84 0 385181..388282 - 1033 59713530 ebgA VF_A0347 - cryptic beta-D-galactosidase subunit alpha 347 37.15 0 388632..389627 - 331 59713531 ebgR VF_A0348 - DNA-binding transcriptional repressor EbgR 348 37.31 0 389729..390508 - 259 59713532 - VF_A0349 - DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) 349 37.74 0 390512..392371 - 619 59713533 - VF_A0350 - cyclic nucleotide binding protein/CBS domain-containing proteins 350 39.71 0 392512..394143 - 543 59713534 yidK VF_A0351 - transporter 351 41.64 +1 394429..395439 + 336 59713535 galE VF_A0352 - UDP-galactose-4-epimerase 352 41.98 +1 395577..396629 + 350 172087801 galT VF_A0353 - galactose-1-phosphate uridylyltransferase 353 42.42 +1 396823..397977 + 384 59713538 galK VF_A0355 - galactokinase 354 39.74 0 397987..399048 + 353 172087802 galM VF_A0356 - aldose 1-epimerase 355 41.79 +1 399122..402172 - 1016 59713540 - VF_A0357 - acriflavin resistance plasma membrane protein 356 40.43 0 402176..403288 - 370 59713541 - VF_A0358 - acriflavin resistance periplasmic protein 357 36.60 0 403459..404070 + 203 59713542 - VF_A0359 - TetR family transcriptional regulator 358 35.41 0 404218..406812 + 864 59713543 - VF_A0360 - sensor histidine kinase 359 37.54 0 406842..407840 - 332 59713544 galR VF_A0361 - DNA-binding transcriptional repressor 360 37.24 0 407971..408303 + 110 59713545 ygjH VF_A0362 - hypothetical protein 361 39.30 0 408563..410071 + 502 59713546 - VF_A0363 - sodium/proton-dependent alanine carrier protein 362 37.66 0 410151..410543 + 130 59713547 - VF_A0364 - transporter 363 39.37 0 410624..410971 + 115 59713548 - VF_A0365 - translation initiation inhibitor 364 37.81 0 411335..412651 + 438 59713549 - VF_A0366 - branched-chain amino acid transport system II carrier protein 365 36.90 0 412725..413621 + 298 59713550 - VF_A0367 - deacetylase 366 30.19 -1 413840..415525 + 561 59713551 - VF_A0368 - hypothetical protein 367 35.88 0 415806..416237 + 143 59713552 - VF_A0369 - PTS system, fructose-like-1 IIA component 368 41.74 +1 416255..417658 + 467 59713553 - VF_A0370 - PTS system, fructose-like enzyme IIC component 369 36.72 0 417813..418373 - 186 59713554 - VF_A0371 - hypothetical protein 370 36.43 0 418805..420064 + 419 59713555 ybdG VF_A0372 - mechanosensitive channel 371 34.27 0 420219..421493 + 424 59713556 - VF_A0373 - mechanosensitive ion channel 372 38.47 0 421737..423041 + 434 59713557 - VF_A0374 - ATP-dependent RNA helicase 373 38.23 0 423316..424194 + 292 59713558 - VF_A0375 - hypothetical protein 374 40.36 0 424198..425322 + 374 59713559 - VF_A0376 - hypothetical protein 375 36.47 0 425333..426385 + 350 59713560 - VF_A0377 - hypothetical protein 376 40.45 0 426464..428065 - 533 59713561 - VF_A0378 - glycine betaine transporter 377 38.82 0 428255..429385 - 376 59713562 yiaV VF_A0379 - membrane fusion protein (MFP) component of efflux pump, signal anchor 378 39.37 0 429385..429765 - 126 59713563 yiaW VF_A0380 - inner membrane protein 379 37.84 0 429932..431086 - 384 59713564 - VF_A0381 - GGDEF domain-containing protein 380 29.94 -1 431076..431252 + 58 172087803 - VF_A1180 - hypothetical protein 381 34.44 0 431309..431668 + 119 59713565 - VF_A0382 - hypothetical protein 382 39.75 0 431738..433780 - 680 59713566 rnb VF_A0383 - exoribonuclease II 383 45.09 +2 434104..436008 + 634 59713567 deaD VF_A0384 - ATP-dependent RNA helicase 384 33.15 -1 436289..436825 + 178 59713568 speG VF_A0385 - spermidine N1-acetyltransferase 385 39.34 0 436886..438349 - 487 59713569 - VF_A0386 - formate/nitrite transporter family protein 386 38.27 0 438535..439446 + 303 59713570 - VF_A0387 - LysR family transcriptional regulator 387 32.45 -1 439542..440222 + 226 59713571 - VF_A0388 - hypothetical protein 388 38.69 0 440416..442281 + 621 59713572 - VF_A0389 - methyl-accepting chemotaxis protein 389 37.40 0 442353..443213 - 286 59713573 - VF_A0390 - amino acid ABC transporter permease protein 390 39.01 0 443217..444026 - 269 59713574 - VF_A0391 - ABC transporter amino acid-binding protein 391 37.23 0 444041..444835 - 264 59713575 glnP VF_A0392 - amino acid ABC transporter permease protein 392 37.88 0 444837..445583 - 248 59713576 - VF_A0393 - amino acid transport ATP-binding protein 393 40.17 0 445832..446884 + 350 59713577 aroG VF_A0394 - phospho-2-dehydro-3-deoxyheptonate aldolase 394 38.29 0 446935..448569 - 544 59713578 ybjD VF_A0395 - hypothetical protein 395 36.90 0 448796..450535 + 579 59713579 - VF_A0396 - 5'-nucleotidase 396 34.92 0 450997..451185 + 62 59713580 - VF_A0397 - hypothetical protein 397 34.34 0 451254..452837 - 527 59713581 - VF_A0398 - GGDEF domain-containing protein 398 36.53 0 452839..454308 - 489 59713582 - VF_A0399 - hypothetical protein 37.27 MEAN 3.84 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0