IslandPathversion 1.0

IslandPath Analysis: Vibrio fischeri ES114



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.27 STD DEV: 3.84
Vibrio fischeri ES114 chromosome II, complete sequence - 1..1330333
1175 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
257	 37.52	0	286358..287146	+	262	59713438	yeaM	VF_A0255	-	DNA-binding transcriptional regulator
258	 34.40	0	287408..287782	+	124	59713439	-	VF_A0256	-	hypothetical protein
259	 35.78	0	287878..288489	-	203	59713440	-	VF_A0257	-	malate synthase
260	 39.45	0	288598..290100	+	500	59713441	-	VF_A0258	-	MerR family transcriptional regulator
261	 28.88	-2	290138..291238	-	366	59713442	-	VF_A0259	-	transcriptional regulator
262	 39.80	0	291668..293584	-	638	59713443	-	VF_A0260	-	glutathione-regulated potassium-efflux system protein KefC
263	 36.73	0	293592..294209	-	205	59713444	-	VF_A0261	-	modulator of glutathione-dependent potassium efflux system
264	 37.58	0	294325..294654	-	109	59713445	-	VF_A0262	-	quaternary ammonium compound-resistance protein
265	 38.48	0	294813..295220	-	135	59713446	-	VF_A0263	-	hypothetical protein
266	 38.45	0	295353..296564	-	403	59713447	ycbX	VF_A0264	-	2Fe-2S cluster-containing protein
267	 36.12	0	296576..297832	-	418	59713448	-	VF_A0265	-	two component sensor histidine kinase
268	 36.64	0	297807..298472	-	221	59713449	-	VF_A0266	-	transcriptional regulator
269	 35.25	0	298554..299438	+	294	59713450	-	VF_A0267	-	hypothetical protein
270	 37.40	0	299582..300490	+	302	59713451	yedI	VF_A0268	-	inner membrane protein
271	 40.27	0	300493..300867	-	124	59713452	-	VF_A0269	-	putative lipoprotein
272	 36.50	0	302049..303059	-	336	59713455	-	VF_A0272	-	integral membrane protein
273	 39.48	0	303302..304261	+	319	59713456	-	VF_A0273	-	elastase 2 precursor
274	 35.55	0	304321..305448	-	375	59713457	-	VF_A0274	-	acyl-CoA desaturase
275	 36.29	0	305581..305817	+	78	59713458	-	VF_A0275	-	hypothetical protein
276	 36.49	0	305827..307062	-	411	59713459	-	VF_A0276	-	GGDEF domain-containing protein
277	 35.54	0	307799..308296	-	165	59713460	-	VF_A0277	-	hypothetical protein
278	 35.95	0	308442..309398	-	318	59713461	alx	VF_A0278	-	putative membrane-bound redox modulator that IS induced by high pH
279	 39.32	0	309787..310956	+	389	59713462	-	VF_A0279	-	hypothetical protein
280	 34.36	0	311017..311988	-	323	59713463	-	VF_A0280	-	hypothetical protein
281	 38.85	0	312151..314271	+	706	59713464	nrdD	VF_A0281	-	anaerobic ribonucleoside triphosphate reductase
282	 37.15	0	314271..314741	+	156	59713465	nrdG	VF_A0282	-	anaerobic ribonucleotide reductase-activating protein
283	 40.66	0	314832..316019	+	395	59713466	-	VF_A0283	-	aromatic amino acid aminotransferase
284	 38.47	0	316084..316725	+	213	59713467	-	VF_A0284	-	ATP-dependent Zn protease
285	 36.50	0	316802..318220	-	472	59713468	-	VF_A0285	-	amino-acid ABC transporter binding protein
286	 33.89	0	318311..319744	-	477	59713469	-	VF_A0286	-	amino-acid ABC transporter binding protein
287	 37.96	0	320009..320548	-	179	59713470	-	VF_A0287	-	hypothetical protein
288	 37.01	0	320632..321012	-	126	59713471	-	VF_A0288	-	protein YgiW precursor
289	 39.44	0	321185..322690	+	501	59713472	cobQ	VF_A0289	-	cobyric acid synthase
290	 36.72	0	322702..323439	+	245	59713473	modA	VF_A0290	-	molybdate ABC transporter, periplasmic molybdate-binding protein
291	 40.87	0	323436..324125	+	229	59713474	modB	VF_A0291	-	molybdate ABC transporter permease protein
292	 38.63	0	324129..325223	+	364	59713475	modC	VF_A0292	-	molybdate transporter ATP-binding protein
293	 37.30	0	325234..325914	+	226	59713476	yjjG	VF_A0293	-	nucleotidase
294	 35.59	0	325995..326171	-	58	59713477	-	VF_A0294	-	hypothetical protein
295	 38.34	0	326176..326694	-	172	59713478	yaiL	VF_A0295	-	nucleoprotein/polynucleotide-associated enzyme
296	 41.38	+1	326739..327086	+	115	59713479	-	VF_A0296	-	hypothetical protein
297	 40.68	0	327418..327594	+	58	59713480	-	VF_A0297	-	TorE protein
298	 40.88	0	327652..328830	+	392	59713481	torC	VF_A0298	-	trimethylamine N-oxide reductase, cytochrome c-type subunit
299	 42.85	+1	328854..331712	+	952	59713482	torA	VF_A0299	-	trimethylamine N-oxide (TMAO) reductase I, catalytic subunit
300	 34.89	0	331950..333935	+	661	59713483	-	VF_A0300	-	methyl-accepting chemotaxis protein
301	 38.39	0	334332..336071	+	579	59713484	-	VF_A0301	-	alpha-galactosidase
302	 32.58	-1	336291..338270	+	659	59713485	-	VF_A0302	-	methyl-accepting chemotaxis protein
303	 30.61	-1	338260..338406	+	48	59713486	-	VF_A0303	-	hypothetical protein
304	 28.37	-2	338455..339582	-	375	172087799	-	VF_A0304	-	hypothetical protein
305	 38.91	0	339592..340416	-	274	59713488	sapF	VF_A0305	-	peptide transport system ATP-binding protein SapF
306	 42.01	+1	340400..341413	-	337	59713489	sapD	VF_A0306	-	peptide transport system ATP-binding protein SapD
307	 40.20	0	341413..342300	-	295	59713490	sapC	VF_A0307	-	peptide transport system permease protein SapC
308	 37.45	0	342287..343234	-	315	59713491	sapB	VF_A0308	-	peptide transport system permease protein SapB
309	 38.13	0	343234..344859	-	541	59713492	sapA	VF_A0309	-	peptide transport protein SapA
310	 37.84	0	344937..345956	-	339	59713493	pspF	VF_A0310	-	DNA-binding transcriptional activator
311	 35.89	0	346132..346797	+	221	59713494	pspA	VF_A0311	-	regulatory protein for phage-shock-protein operon
312	 38.67	0	346861..347085	+	74	59713495	pspB	VF_A0312	-	phage shock protein B
313	 40.57	0	347085..347471	+	128	59713496	pspC	VF_A0313	-	PspC transcriptional regulator, toxin of PspCB toxin-antitoxin pair
314	 38.98	0	347567..348964	+	465	59713497	ycjX	VF_A0314	-	hypothetical protein
315	 38.30	0	348961..349986	+	341	59713498	ycjF	VF_A0315	-	hypothetical protein
316	 38.68	0	350247..351125	+	292	59713499	thiD	VF_A0316	-	phosphomethylpyrimidine kinase
317	 40.56	0	351118..351864	+	248	59713500	-	VF_A0317	-	hydroxymethylpyrimidine transport ATP-binding protein
318	 40.42	0	351857..352675	+	272	59713501	tauC	VF_A0318	-	taurine transporter permease subunit
319	 39.14	0	352703..353650	+	315	59713502	-	VF_A0319	-	hydroxymethylpyrimidine-binding protein
320	 39.37	0	353669..354331	+	220	59713503	-	VF_A0320	-	transcriptional activator TenA
321	 41.67	+1	354364..355167	+	267	59713504	thiM	VF_A0321	-	hydroxyethylthiazole kinase
322	 39.75	0	355178..355816	+	212	59713505	-	VF_A0322	-	thiamine-phosphate pyrophosphorylase
323	 31.24	-1	355822..356634	-	270	59713506	-	VF_A0323	-	GGDEF domain-containing protein
324	 36.13	0	356822..358108	-	428	59713507	-	VF_A0324	-	thiol:disulfide interchange protein DsbD
325	 38.61	0	358786..360471	+	561	59713508	-	VF_A0325	-	methyl-accepting chemotaxis protein
326	 36.19	0	360529..361227	-	232	59713509	-	VF_A0326	-	hypothetical protein
327	 33.33	-1	361284..361454	+	56	59713510	-	VF_A0327	-	hypothetical protein
328	 43.05	+1	361620..362288	-	222	59713511	yiaD	VF_A0328	-	outer membrane lipoprotein
329	 38.68	0	362440..363000	-	186	59713512	-	VF_A0329	-	hypothetical protein
330	 36.99	0	363003..364505	-	500	59713513	-	VF_A0330	-	hypothetical protein
331	 37.94	0	364534..366813	-	759	59713514	-	VF_A0331	-	hypothetical protein
332	 37.92	0	366823..368958	-	711	59713515	-	VF_A0332	-	TonB system receptor, putative
333	 34.48	0	368975..370978	-	667	59713516	ptrB	VF_A0333	-	protease II
334	 34.30	0	371218..371736	-	172	59713517	-	VF_A0334	-	MarR family transcriptional regulator
335	 39.95	0	371836..372258	+	140	59713518	-	VF_A0335	-	osmotically inducible protein C
336	 40.66	0	372277..372672	+	131	59713519	-	VF_A0336	-	hypothetical protein
337	 40.48	0	372754..375132	-	792	172087800	-	VF_A0338	-	putative glucosyl hydrolase precursor
338	 40.66	0	375263..376258	-	331	59713522	ygjJ	VF_A0339	-	hypothetical protein
339	 40.42	0	376622..378046	-	474	59713523	-	VF_A0340	-	amino acid permease
340	 25.83	-2	378811..378930	-	39	59713524	-	VF_A0341	-	hypothetical protein
341	 30.56	-1	378969..380300	+	443	59713525	-	VF_A0342	-	GGDEF domain-containing protein
342	 29.04	-2	380290..381618	+	442	59713526	-	VF_A0343	-	GGDEF domain-containing protein
343	 29.98	-1	381624..383054	+	476	59713527	-	VF_A0344	-	EAL domain-containing protein
344	 39.06	0	383125..384555	-	476	59713528	ygjI	VF_A0345	-	transporter
345	 38.41	0	384729..385181	-	150	59713529	ebgC	VF_A0346	-	cryptic beta-D-galactosidase subunit beta
346	 40.84	0	385181..388282	-	1033	59713530	ebgA	VF_A0347	-	cryptic beta-D-galactosidase subunit alpha
347	 37.15	0	388632..389627	-	331	59713531	ebgR	VF_A0348	-	DNA-binding transcriptional repressor EbgR
348	 37.31	0	389729..390508	-	259	59713532	-	VF_A0349	-	DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease)
349	 37.74	0	390512..392371	-	619	59713533	-	VF_A0350	-	cyclic nucleotide binding protein/CBS domain-containing proteins
350	 39.71	0	392512..394143	-	543	59713534	yidK	VF_A0351	-	transporter
351	 41.64	+1	394429..395439	+	336	59713535	galE	VF_A0352	-	UDP-galactose-4-epimerase
352	 41.98	+1	395577..396629	+	350	172087801	galT	VF_A0353	-	galactose-1-phosphate uridylyltransferase
353	 42.42	+1	396823..397977	+	384	59713538	galK	VF_A0355	-	galactokinase
354	 39.74	0	397987..399048	+	353	172087802	galM	VF_A0356	-	aldose 1-epimerase
355	 41.79	+1	399122..402172	-	1016	59713540	-	VF_A0357	-	acriflavin resistance plasma membrane protein
356	 40.43	0	402176..403288	-	370	59713541	-	VF_A0358	-	acriflavin resistance periplasmic protein
37.27	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.