IslandPathversion 1.0

IslandPath Analysis: Vibrio fischeri ES114



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.27 STD DEV: 3.84
Vibrio fischeri ES114 chromosome II, complete sequence - 1..1330333
1175 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
209	 38.29	0	227737..228987	+	416	59713389	ydeE	VF_A0206	-	transporter
210	 38.28	0	229014..229964	-	316	59713390	-	VF_A0207	-	hypothetical protein
211	 36.16	0	230046..231212	-	388	59713391	-	VF_A0208	-	arylsulfatase regulator (Fe-S oxidoreductase)
212	 38.33	0	231374..232774	+	466	59713392	-	VF_A0209	-	phosphatidylserine decarboxylase
213	 35.24	0	232903..234531	+	542	59713393	eptA	VF_A0210	-	metal dependent hydrolase
214	 35.23	0	234631..235317	+	228	59713394	-	VF_A0211	-	transcriptional regulator
215	 33.19	-1	235305..236729	+	474	59713395	-	VF_A0212	-	two component sensor histidine kinase
216	 40.48	0	236799..238337	-	512	59713396	-	VF_A0213	-	sulfatase family protein
217	 34.62	0	238234..238623	-	129	172087795	-	VF_A1178	-	hypothetical protein
218	 35.64	0	238736..239644	-	302	59713397	-	VF_A0214	-	transcriptional regulator SyrB
219	 25.25	-2	240121..241011	+	296	59713398	-	VF_A0215	-	hypothetical protein
220	 29.59	-2	241001..242149	+	382	59713399	-	VF_A0216	-	two component response regulator
221	 32.09	-1	242118..242438	+	106	59713400	-	VF_A0217	-	hypothetical protein
222	 35.16	0	242789..243007	+	72	59713401	flp2	VF_A0218	-	fimbrial protein precursor Flp1
223	 29.89	-1	243017..243451	+	144	172087796	-	VF_A1179	-	hypothetical protein
224	 33.72	0	243460..244245	+	261	59713402	-	VF_A0219	-	tungstate-binding protein precursor
225	 35.00	0	244256..245578	+	440	59713403	-	VF_A0220	-	general secretion pathway protein D
226	 35.01	0	245575..246111	+	178	59713404	-	VF_A0221	-	putative lipoprotein
227	 33.83	0	246113..247330	+	405	59713405	-	VF_A0222	-	ATPase involved in chromosome partitioning
228	 39.08	0	247333..248619	+	428	59713406	tadA2	VF_A0223	-	putative type IV secretion NTPase
229	 33.98	0	248616..249539	+	307	59713407	tadB2	VF_A0224	-	TadB-like protein involved in pilus formation and/or protein secretion
230	 33.00	-1	249509..250420	+	303	59713408	tadC2	VF_A0225	-	bipartite nuclear localization signal containing protein
231	 30.78	-1	250410..251153	+	247	59713409	tadD2	VF_A0226	-	TPR repeat-containing protein
232	 35.17	0	251158..251646	+	162	59713410	tadE2	VF_A0227	-	TadE-like protein
233	 35.93	0	251630..252169	+	179	59713411	tadF2	VF_A0228	-	ATP/GTP-binding motif-containing protein
234	 38.76	0	252171..253442	+	423	59713412	tadG2	VF_A0229	-	TadG-like protein
235	 32.94	-1	253482..254243	+	253	59713413	-	VF_A0230	-	outer membrane protein
236	 26.10	-2	254364..254999	+	211	59713414	-	VF_A0231	-	hypothetical protein
237	 24.24	-2	254953..255414	+	153	59713415	-	VF_A0232	-	hypothetical protein
238	 28.54	-2	255417..257627	-	736	59713416	-	VF_A0233	-	hypothetical protein
239	 28.28	-2	257646..258041	-	131	59713417	-	VF_A0234	-	hypothetical protein
240	 41.40	+1	258428..259282	+	284	59713418	glpF	VF_A0235	-	glycerol uptake facilitator protein GlpF
241	 41.98	+1	259348..260862	+	504	59713419	glpK	VF_A0236	-	glycerol kinase
242	 31.72	-1	260932..263715	-	927	59713420	rscS	VF_A0237	-	hybrid sensor kinase RscS
243	 35.42	0	264297..265064	+	255	59713421	glpR	VF_A0238	-	glycerol-3-phosphate regulon repressor protein GlpR
244	 37.66	0	265242..266789	+	515	59713422	glpD	VF_A0239	-	glycerol-3-phosphate dehydrogenase
245	 27.09	-2	266819..267940	-	373	59713423	-	VF_A0240	-	SUA5 protein
246	 37.37	0	268451..269539	+	362	59713424	-	VF_A0241	-	choloylglycine hydrolase
247	 31.40	-1	269561..271267	-	568	172087797	-	VF_A0244	-	GGDEF/EAL domain-containing protein
248	 29.24	-2	271588..271758	+	56	59713428	-	VF_A0245	-	hypothetical protein
249	 35.85	0	271886..273751	+	621	59713429	-	VF_A0246	-	methyl-accepting chemotaxis protein
250	 30.67	-1	273794..274957	-	387	59713430	-	VF_A0247	-	SUA5 protein
251	 37.34	0	275235..276506	-	423	59713431	glpC	VF_A0248	-	sn-glycerol-3-phosphate dehydrogenase subunit C
252	 39.77	0	276503..277870	-	455	59713432	glpB	VF_A0249	-	anaerobic glycerol-3-phosphate dehydrogenase subunit B
253	 42.23	+1	277867..279519	-	550	59713433	glpA	VF_A0250	-	sn-glycerol-3-phosphate dehydrogenase subunit A
254	 42.58	+1	279815..283978	+	1387	172087798	fdhF	VF_A0251	-	formate dehydrogenase-H
255	 40.73	0	284061..285290	-	409	59713436	pepT	VF_A0253	-	peptidase T
256	 36.48	0	285425..285805	-	126	59713437	-	VF_A0254	-	putative lipoprotein
257	 37.52	0	286358..287146	+	262	59713438	yeaM	VF_A0255	-	DNA-binding transcriptional regulator
258	 34.40	0	287408..287782	+	124	59713439	-	VF_A0256	-	hypothetical protein
259	 35.78	0	287878..288489	-	203	59713440	-	VF_A0257	-	malate synthase
260	 39.45	0	288598..290100	+	500	59713441	-	VF_A0258	-	MerR family transcriptional regulator
261	 28.88	-2	290138..291238	-	366	59713442	-	VF_A0259	-	transcriptional regulator
262	 39.80	0	291668..293584	-	638	59713443	-	VF_A0260	-	glutathione-regulated potassium-efflux system protein KefC
263	 36.73	0	293592..294209	-	205	59713444	-	VF_A0261	-	modulator of glutathione-dependent potassium efflux system
264	 37.58	0	294325..294654	-	109	59713445	-	VF_A0262	-	quaternary ammonium compound-resistance protein
265	 38.48	0	294813..295220	-	135	59713446	-	VF_A0263	-	hypothetical protein
266	 38.45	0	295353..296564	-	403	59713447	ycbX	VF_A0264	-	2Fe-2S cluster-containing protein
267	 36.12	0	296576..297832	-	418	59713448	-	VF_A0265	-	two component sensor histidine kinase
268	 36.64	0	297807..298472	-	221	59713449	-	VF_A0266	-	transcriptional regulator
269	 35.25	0	298554..299438	+	294	59713450	-	VF_A0267	-	hypothetical protein
270	 37.40	0	299582..300490	+	302	59713451	yedI	VF_A0268	-	inner membrane protein
271	 40.27	0	300493..300867	-	124	59713452	-	VF_A0269	-	putative lipoprotein
272	 36.50	0	302049..303059	-	336	59713455	-	VF_A0272	-	integral membrane protein
273	 39.48	0	303302..304261	+	319	59713456	-	VF_A0273	-	elastase 2 precursor
274	 35.55	0	304321..305448	-	375	59713457	-	VF_A0274	-	acyl-CoA desaturase
275	 36.29	0	305581..305817	+	78	59713458	-	VF_A0275	-	hypothetical protein
276	 36.49	0	305827..307062	-	411	59713459	-	VF_A0276	-	GGDEF domain-containing protein
277	 35.54	0	307799..308296	-	165	59713460	-	VF_A0277	-	hypothetical protein
278	 35.95	0	308442..309398	-	318	59713461	alx	VF_A0278	-	putative membrane-bound redox modulator that IS induced by high pH
279	 39.32	0	309787..310956	+	389	59713462	-	VF_A0279	-	hypothetical protein
280	 34.36	0	311017..311988	-	323	59713463	-	VF_A0280	-	hypothetical protein
281	 38.85	0	312151..314271	+	706	59713464	nrdD	VF_A0281	-	anaerobic ribonucleoside triphosphate reductase
282	 37.15	0	314271..314741	+	156	59713465	nrdG	VF_A0282	-	anaerobic ribonucleotide reductase-activating protein
283	 40.66	0	314832..316019	+	395	59713466	-	VF_A0283	-	aromatic amino acid aminotransferase
284	 38.47	0	316084..316725	+	213	59713467	-	VF_A0284	-	ATP-dependent Zn protease
285	 36.50	0	316802..318220	-	472	59713468	-	VF_A0285	-	amino-acid ABC transporter binding protein
286	 33.89	0	318311..319744	-	477	59713469	-	VF_A0286	-	amino-acid ABC transporter binding protein
287	 37.96	0	320009..320548	-	179	59713470	-	VF_A0287	-	hypothetical protein
288	 37.01	0	320632..321012	-	126	59713471	-	VF_A0288	-	protein YgiW precursor
289	 39.44	0	321185..322690	+	501	59713472	cobQ	VF_A0289	-	cobyric acid synthase
290	 36.72	0	322702..323439	+	245	59713473	modA	VF_A0290	-	molybdate ABC transporter, periplasmic molybdate-binding protein
291	 40.87	0	323436..324125	+	229	59713474	modB	VF_A0291	-	molybdate ABC transporter permease protein
292	 38.63	0	324129..325223	+	364	59713475	modC	VF_A0292	-	molybdate transporter ATP-binding protein
293	 37.30	0	325234..325914	+	226	59713476	yjjG	VF_A0293	-	nucleotidase
294	 35.59	0	325995..326171	-	58	59713477	-	VF_A0294	-	hypothetical protein
295	 38.34	0	326176..326694	-	172	59713478	yaiL	VF_A0295	-	nucleoprotein/polynucleotide-associated enzyme
296	 41.38	+1	326739..327086	+	115	59713479	-	VF_A0296	-	hypothetical protein
297	 40.68	0	327418..327594	+	58	59713480	-	VF_A0297	-	TorE protein
298	 40.88	0	327652..328830	+	392	59713481	torC	VF_A0298	-	trimethylamine N-oxide reductase, cytochrome c-type subunit
299	 42.85	+1	328854..331712	+	952	59713482	torA	VF_A0299	-	trimethylamine N-oxide (TMAO) reductase I, catalytic subunit
300	 34.89	0	331950..333935	+	661	59713483	-	VF_A0300	-	methyl-accepting chemotaxis protein
301	 38.39	0	334332..336071	+	579	59713484	-	VF_A0301	-	alpha-galactosidase
302	 32.58	-1	336291..338270	+	659	59713485	-	VF_A0302	-	methyl-accepting chemotaxis protein
303	 30.61	-1	338260..338406	+	48	59713486	-	VF_A0303	-	hypothetical protein
304	 28.37	-2	338455..339582	-	375	172087799	-	VF_A0304	-	hypothetical protein
305	 38.91	0	339592..340416	-	274	59713488	sapF	VF_A0305	-	peptide transport system ATP-binding protein SapF
306	 42.01	+1	340400..341413	-	337	59713489	sapD	VF_A0306	-	peptide transport system ATP-binding protein SapD
307	 40.20	0	341413..342300	-	295	59713490	sapC	VF_A0307	-	peptide transport system permease protein SapC
308	 37.45	0	342287..343234	-	315	59713491	sapB	VF_A0308	-	peptide transport system permease protein SapB
37.27	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.