IslandPath Analysis: Vibrio fischeri ES114



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.27   STD DEV: 3.84
Vibrio fischeri ES114 chromosome II, complete sequence - 1..1330333
1175 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
123	 40.32	0	134323..134694	-	123	59713302	-	VF_A0119	-	lactoylglutathione lyase
124	 39.81	0	135014..137158	+	714	59713303	-	VF_A0120	-	putative cytoplasmic protein
125	 37.34	0	137170..137643	+	157	59713304	-	VF_A0121	-	hypothetical protein
126	 39.65	0	137700..138776	-	358	59713305	-	VF_A0122	-	hypothetical protein
127	 39.74	0	139144..140610	+	488	59713306	ybgH	VF_A0123	-	transporter
128	 40.88	0	140955..142439	+	494	59713307	tppB	VF_A0124	-	putative tripeptide transporter permease
129	 43.02	+1	142625..142975	+	116	59713308	-	VF_A0125	-	rhodanese-related sulfurtransferase
130	 41.67	+1	142985..143692	-	235	59713309	-	VF_A0126	-	DNA-3-methyladenine glycosylase
131	 37.24	0	143883..144368	+	161	59713310	-	VF_A0127	-	hypothetical protein
132	 36.67	0	144659..144928	+	89	59713311	-	VF_A0128	-	PTS system, IIB component
133	 40.18	0	144944..146200	+	418	59713312	ulaA	VF_A0129	-	ascorbate-specific PTS system enzyme IIC
134	 35.93	0	146185..146646	+	153	59713313	-	VF_A0130	-	PTS system, 3-keto-L-gulonate specific IIA component
135	 41.18	+1	146805..147632	+	275	59713314	-	VF_A0131	-	CAAX amino protease
136	 37.55	0	147797..148033	+	78	59713315	-	VF_A0132	-	hypothetical protein
137	 38.57	0	148094..148513	-	139	59713316	-	VF_A0133	-	hypothetical protein
138	 43.14	+1	148617..148718	-	33	59713317	-	VF_A0134	-	hypothetical protein
139	 34.08	0	148687..150549	-	620	59713318	-	VF_A0135	-	DNA helicase II
140	 32.80	-1	150820..151947	+	375	59713319	-	VF_A0136	-	hypothetical protein
141	 32.66	-1	151930..152520	-	196	59713320	-	VF_A0137	-	Type II restriction-modification system methylation subunit
142	 32.41	-1	152687..153226	-	179	59713321	-	VF_A0138	-	hypothetical protein
143	 41.64	+1	153410..154444	-	344	59713322	-	VF_A0139	-	hypothetical protein
144	 39.45	0	155000..155947	+	315	59713323	-	VF_A0140	-	hypothetical protein
145	 41.51	+1	157776..160073	-	765	59713325	-	VF_A0142	-	formate acetyltransferase
146	 41.24	+1	160600..162078	+	492	59713326	gbpA	VF_A0143	-	N-acetylglucosamine-binding protein A
147	 39.62	0	162194..163132	-	312	59713327	hvnB	VF_A0144	-	halovibrin HvnB
148	 36.79	0	163454..163945	+	163	59713328	ygjP	VF_A0145	-	metal dependent hydrolase
149	 41.89	+1	163976..164197	-	73	59713329	-	VF_A0146	-	hypothetical protein
150	 40.00	0	164594..164788	+	64	59713330	-	VF_A0147	-	hypothetical protein
151	 36.69	0	164855..165241	-	128	59713331	pilA2	VF_A0148	-	PilA-like type-IV pilus protein
152	 35.82	0	165617..165817	+	66	59713332	-	VF_A0149	-	hypothetical protein
153	 42.05	+1	165913..166635	+	240	59713333	yeeN	VF_A0150	-	hypothetical protein
154	 40.79	0	166790..168292	+	500	59713334	rhlE	VF_A0151	-	RNA helicase
155	 34.37	0	168529..169980	+	483	59713335	-	VF_A0152	-	GGDEF domain-containing protein
156	 42.81	+1	170231..171433	+	400	59713336	emrD	VF_A0153	-	multidrug resistance protein D
157	 40.39	0	171540..172928	-	462	59713337	dbpA	VF_A0154	-	ATP-dependent RNA helicase DbpA
158	 33.82	0	173231..174679	+	482	59713338	-	VF_A0155	-	GGDEF domain-containing protein
159	 37.02	0	174758..175489	+	243	59713339	-	VF_A0156	-	hypothetical protein
160	 39.72	0	175505..176710	-	401	59713340	-	VF_A0157	-	permease
161	 39.09	0	176797..177612	+	271	59713341	fhuC	VF_A0158	-	iron-hydroxamate transporter subunit
162	 41.16	+1	177651..178544	+	297	59713342	fhuD	VF_A0159	-	iron-hydroxamate transporter subunit
163	 39.97	0	178557..180560	+	667	59713343	fhuB	VF_A0160	-	iron-hydroxamate transporter permease subunit
164	 37.73	0	180709..182484	+	591	59713344	iucA	VF_A0161	-	aerobactin siderophore biosynthesis protein IucA
165	 38.05	0	182477..183388	+	303	59713345	iucB	VF_A0162	-	aerobactin siderophore synthesis protein IucB
166	 38.33	0	183388..185148	+	586	59713346	iucC	VF_A0163	-	aerobactin siderophore biosynthesis protein IucC
167	 38.72	0	185177..186475	+	432	59713347	iucD	VF_A0164	-	aerobactin siderophore biosynthesis protein IucD
168	 37.93	0	186579..188753	+	724	59713348	iutA	VF_A0165	-	ferric aerobactin receptor precursor IutA
169	 40.80	0	188936..189859	+	307	59713349	qmcA	VF_A0166	-	protease, membrane anchored
170	 39.29	0	189869..190321	+	150	59713350	-	VF_A0167	-	hypothetical protein
171	 34.13	0	190558..191808	+	416	59713351	-	VF_A0168	-	methyl-accepting chemotaxis protein
172	 38.79	0	192233..193864	+	543	59713352	-	VF_A0169	-	methyl-accepting chemotaxis protein
173	 39.73	0	194325..195950	+	541	59713353	-	VF_A0170	-	methyl-accepting chemotaxis protein
174	 34.31	0	196139..196240	-	33	59713354	-	VF_A0171	-	hypothetical protein
175	 29.41	-2	196299..196553	+	84	59713355	-	VF_A0172	-	hypothetical protein
176	 42.06	+1	196618..197499	-	293	59713356	-	VF_A0173	-	3-hydroxyisobutyrate dehydrogenase
177	 31.43	-1	197650..198174	-	174	59713357	-	VF_A0174	-	hypothetical protein
178	 38.55	0	198391..199311	-	306	59713358	-	VF_A0175	-	hypothetical protein
179	 38.14	0	199419..199730	+	103	59713359	-	VF_A0176	-	ArsR family transcriptional regulator
180	 38.82	0	199754..200227	+	157	59713360	ogt	VF_A0177	-	O-6-alkylguanine-DNA:cysteine-protein methyltransferase
181	 34.97	0	200245..201585	-	446	59713361	cusS	VF_A0178	-	sensory histidine kinase in two-component regulatory system with CusR, senses copper ions
182	 36.71	0	201590..202270	-	226	59713362	cusR	VF_A0179	-	DNA-binding response regulator in two-component regulatory system with CusS
183	 33.57	0	202374..202799	-	141	59713363	-	VF_A0180	-	hypothetical protein
184	 39.34	0	202949..203614	+	221	59713364	-	VF_A0181	-	transcriptional regulator SyrB
185	 37.51	0	203620..205008	+	462	59713365	-	VF_A0182	-	two component sensor histidine kinase
186	 34.40	0	205244..206275	+	343	59713366	-	VF_A0183	-	hypothetical protein
187	 35.17	0	206285..206827	+	180	59713367	-	VF_A0184	-	hypothetical protein
188	 36.95	0	206812..208551	+	579	59713368	-	VF_A0185	-	hypothetical protein
189	 34.74	0	208548..209330	+	260	59713369	motA2	VF_A0186	-	flagellar motor protein MotA2
190	 38.94	0	209331..209972	+	213	59713370	motB2	VF_A0187	-	flagellar motor protein MotB2
191	 42.50	+1	210078..212531	-	817	59713371	torZ	VF_A0188	-	TMAO reductase III (TorYZ), TorZ subunit
192	 41.48	+1	212544..213635	-	363	59713372	torY	VF_A0189	-	TMAO reductase III (TorYZ), cytochrome c-type subunit
193	 23.96	-2	213769..213864	-	31	59713373	-	VF_A0190	-	hypothetical protein
194	 40.42	0	214002..216104	+	700	59713374	-	VF_A0191	-	FhuE receptor precursor
195	 38.54	0	216215..216982	+	255	59713375	-	VF_A0192	-	hypothetical protein
196	 40.12	0	216984..218339	+	451	59713376	-	VF_A0193	-	TolQ protein
197	 42.16	+1	218339..218848	+	169	59713377	-	VF_A0194	-	TolQ protein
198	 40.49	0	218845..219249	+	134	59713378	-	VF_A0195	-	TolR protein
199	 44.77	+1	219249..219869	+	206	59713379	-	VF_A0196	-	TonB protein
200	 38.16	0	219866..221047	+	393	59713380	-	VF_A0197	-	TPR domain-containing protein
201	 36.04	0	221111..221590	-	159	59713381	-	VF_A0198	-	transcriptional repressor
202	 37.41	0	221590..222522	-	310	59713382	-	VF_A0199	-	chitooligosaccharide transport ATP-binding protein oppD
203	 38.87	0	222519..223385	-	288	59713383	-	VF_A0200	-	chitooligosaccharide transport ATP-binding protein oppF
204	 39.67	0	223683..224819	+	378	59713384	-	VF_A0201	-	hypothetical protein
205	 37.09	0	224872..225270	-	132	59713385	-	VF_A0202	-	hypothetical protein
206	 30.72	-1	225569..225721	+	50	59713386	-	VF_A0203	-	hypothetical protein
207	 37.56	0	225772..226410	-	212	59713387	-	VF_A0204	-	hypothetical protein
208	 38.96	0	226529..227506	-	325	59713388	yeiH	VF_A0205	-	inner membrane protein
209	 38.29	0	227737..228987	+	416	59713389	ydeE	VF_A0206	-	transporter
210	 38.28	0	229014..229964	-	316	59713390	-	VF_A0207	-	hypothetical protein
211	 36.16	0	230046..231212	-	388	59713391	-	VF_A0208	-	arylsulfatase regulator (Fe-S oxidoreductase)
212	 38.33	0	231374..232774	+	466	59713392	-	VF_A0209	-	phosphatidylserine decarboxylase
213	 35.24	0	232903..234531	+	542	59713393	eptA	VF_A0210	-	metal dependent hydrolase
214	 35.23	0	234631..235317	+	228	59713394	-	VF_A0211	-	transcriptional regulator
215	 33.19	-1	235305..236729	+	474	59713395	-	VF_A0212	-	two component sensor histidine kinase
216	 40.48	0	236799..238337	-	512	59713396	-	VF_A0213	-	sulfatase family protein
217	 34.62	0	238234..238623	-	129	172087795	-	VF_A1178	-	hypothetical protein
218	 35.64	0	238736..239644	-	302	59713397	-	VF_A0214	-	transcriptional regulator SyrB
219	 25.25	-2	240121..241011	+	296	59713398	-	VF_A0215	-	hypothetical protein
220	 29.59	-2	241001..242149	+	382	59713399	-	VF_A0216	-	two component response regulator
221	 32.09	-1	242118..242438	+	106	59713400	-	VF_A0217	-	hypothetical protein
222	 35.16	0	242789..243007	+	72	59713401	flp2	VF_A0218	-	fimbrial protein precursor Flp1
37.27	MEAN

3.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.