IslandPath Analysis: Vibrio fischeri ES114



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.27   STD DEV: 3.84
Vibrio fischeri ES114 chromosome II, complete sequence - 1..1330333
1175 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1076	 36.00	0	1208933..1210507	+	524	59714255	-	VF_A1072	-	methyl-accepting chemotaxis protein
1077	 24.59	-2	1210837..1212438	+	533	59714256	-	VF_A1073	-	methyl-accepting chemotaxis protein
1078	 29.50	-2	1212467..1213222	+	251	59714257	acfC	VF_A1074	-	accessory colonization factor AcfC
1079	 33.98	0	1213688..1214767	-	359	59714258	-	VF_A1075	-	heptosyltransferase
1080	 26.19	-2	1214785..1215498	-	237	59714259	-	VF_A1076	-	EAL domain-containing protein
1081	 41.14	+1	1216449..1217306	+	285	59714260	-	VF_A1077	-	RIO1 protein
1082	 37.21	0	1217338..1217982	-	214	59714261	-	VF_A1078	-	acetyltransferase/hydrolase family protein
1083	 39.03	0	1218104..1219192	-	362	59714262	ydiK	VF_A1079	-	inner membrane protein
1084	 37.84	0	1219279..1220166	-	295	59714263	-	VF_A1080	-	hypothetical protein
1085	 19.05	-2	1220604..1221212	-	202	59714264	-	VF_A1081	-	hypothetical protein
1086	 21.48	-2	1221421..1222230	+	269	59714265	-	VF_A1082	-	AraC family transcriptional regulator
1087	 23.01	-2	1222827..1223417	+	196	59714266	-	VF_A1083	-	hypothetical protein
1088	 27.36	-2	1223893..1225767	+	624	59714267	-	VF_A1084	-	methyl-accepting chemotaxis protein
1089	 40.94	0	1225797..1225967	-	56	59714268	-	VF_A1085	-	hypothetical protein
1090	 36.81	0	1226101..1226991	+	296	59714269	-	VF_A1086	-	LysR family transcriptional regulator
1091	 39.08	0	1227036..1227122	-	28	172087823	-	VF_A1195	-	hypothetical protein
1092	 40.17	0	1227451..1228503	+	350	59714270	-	VF_A1087	-	ABC transporter substrate-binding protein
1093	 39.83	0	1228513..1229328	+	271	59714271	-	VF_A1088	-	hypothetical protein
1094	 38.63	0	1229325..1230212	+	295	59714272	-	VF_A1089	-	ABC transporter permease protein
1095	 37.79	0	1230199..1230984	+	261	59714273	-	VF_A1090	-	ABC transporter permease protein
1096	 37.65	0	1230984..1232003	+	339	59714274	afuC	VF_A1091	-	CP4-6 prophage; ferric transporter subunit
1097	 35.14	0	1232006..1232671	+	221	59714275	-	VF_A1092	-	hypothetical protein
1098	 28.24	-2	1232706..1232960	-	84	59714276	-	VF_A1093	-	hypothetical protein
1099	 41.43	+1	1233192..1233401	-	69	59714277	cspG	VF_A1094	-	DNA-binding transcriptional regulator
1100	 34.99	0	1233751..1234653	-	300	59714278	hvnA	VF_A1095	-	halovibrin HvnA
1101	 39.79	0	1234669..1236789	-	706	59714279	-	VF_A1096	-	hypothetical protein
1102	 37.84	0	1236884..1238701	-	605	59714280	-	VF_A1097	-	hypothetical protein
1103	 36.16	0	1238792..1239994	-	400	59714281	-	VF_A1098	-	hypothetical protein
1104	 39.03	0	1240134..1242011	-	625	59714282	-	VF_A1099	-	putative lipoprotein
1105	 40.51	0	1242013..1242987	-	324	59714283	ompA	VF_A1100	-	outer membrane protein A
1106	 28.37	-2	1243121..1243402	-	93	59714284	-	VF_A1101	-	hypothetical protein
1107	 35.20	0	1243849..1244652	-	267	59714285	-	VF_A1102	-	phage integrase family site specific recombinase
1108	 40.06	0	1244918..1245928	+	336	59714286	-	VF_A1103	-	multidrug resistance protein A
1109	 37.69	0	1245925..1247394	+	489	59714287	-	VF_A1104	-	multidrug resistance protein B
1110	 38.34	0	1247564..1248442	+	292	59714288	hvnC	VF_A1105	-	halovibrin HvnC
1111	 34.26	0	1248597..1248812	+	71	59714289	-	VF_A1106	-	hypothetical protein
1112	 36.70	0	1248864..1250468	-	534	59714290	-	VF_A1107	-	mechanosensitive ion channel
1113	 39.08	0	1250705..1251226	-	173	59714291	-	VF_A1108	-	hypothetical protein
1114	 29.41	-2	1251339..1251440	-	33	59714293	-	VF_A1110	-	hypothetical protein
1115	 39.31	0	1251403..1252305	+	300	59714292	-	VF_A1109	-	LysR family transcriptional regulator
1116	 38.69	0	1252312..1253151	-	279	59714294	-	VF_A1111	-	hypothetical protein
1117	 38.95	0	1253243..1253830	-	195	59714295	-	VF_A1112	-	amino acid transporter LysE
1118	 38.51	0	1253939..1254382	+	147	59714296	-	VF_A1113	-	AsnC family transcriptional regulator
1119	 36.70	0	1254379..1255062	-	227	59714297	-	VF_A1114	-	cobalt-zinc-cadmium resistance protein CzcD
1120	 40.79	0	1255201..1256085	+	294	59714298	-	VF_A1115	-	LysR family transcriptional regulator
1121	 41.28	+1	1256168..1256809	+	213	59714299	-	VF_A1116	-	homoserine/homoserine lactone efflux protein
1122	 41.03	0	1256903..1257877	-	324	59714300	-	VF_A1117	-	hypothetical protein
1123	 40.84	0	1257892..1258584	-	230	59714301	-	VF_A1118	-	hypothetical protein
1124	 37.27	0	1258955..1259386	-	143	59714302	-	VF_A1119	-	hypothetical protein
1125	 36.78	0	1259521..1260159	+	212	59714303	-	VF_A1120	-	hydrogenase cytochrome B-type subunit
1126	 38.03	0	1260165..1260590	+	141	59714304	-	VF_A1121	-	MarR family transcriptional regulator
1127	 40.50	0	1260854..1261411	+	185	59714305	ectA	VF_A1122	-	L-2,4-diaminobutyric acid acetyltransferase
1128	 41.47	+1	1261432..1262697	+	421	59714306	ectB	VF_A1123	-	diaminobutyrate--2-oxoglutarate aminotransferase
1129	 40.57	0	1262712..1263098	+	128	59714307	ectC	VF_A1124	-	L-ectoine synthase
1130	 39.71	0	1263187..1264614	+	475	59714308	-	VF_A1125	-	aspartate kinase
1131	 25.25	-2	1265068..1265958	+	296	59714309	-	VF_A1126	-	AraC family transcription regulator
1132	 34.09	0	1265997..1266260	+	87	59714310	-	VF_A1127	-	hypothetical protein
1133	 34.07	0	1266273..1266545	+	90	59714311	-	VF_A1128	-	hypothetical protein
1134	 35.86	0	1266631..1266828	+	65	172087824	-	VF_A1196	-	hypothetical protein
1135	 39.38	0	1267088..1278502	-	3804	59714312	-	VF_A1129	-	hypothetical protein
1136	 36.63	0	1278903..1279721	-	272	59714313	-	VF_A1130	-	hypothetical protein
1137	 25.51	-2	1279749..1280489	-	246	59714314	-	VF_A1131	-	hypothetical protein
1138	 40.50	0	1280721..1280999	-	92	59714315	-	VF_A1132	-	anaerobic glycerol-3-phosphate dehydrogenase subunit C
1139	 44.34	+1	1281031..1281339	-	102	59714316	-	VF_A1133	-	anaerobic glycerol-3-phosphate dehydrogenase subunit C
1140	 44.98	+2	1281379..1281687	-	102	59714317	-	VF_A1134	-	anaerobic glycerol-3-phosphate dehydrogenase subunit C
1141	 44.09	+1	1281726..1282004	-	92	59714318	-	VF_A1135	-	anaerobic glycerol-3-phosphate dehydrogenase subunit C
1142	 43.51	+1	1282037..1282321	-	94	59714319	-	VF_A1136	-	anaerobic glycerol-3-phosphate dehydrogenase subunit C
1143	 41.94	+1	1282357..1282635	-	92	59714320	-	VF_A1137	-	anaerobic glycerol-3-phosphate dehydrogenase subunit C
1144	 24.31	-2	1282721..1283296	-	191	59714321	-	VF_A1138	-	structural protein P5
1145	 31.17	-1	1283457..1284104	-	215	59714322	-	VF_A1139	-	hypothetical protein
1146	 37.99	0	1284336..1284614	+	92	59714323	-	VF_A1140	-	hypothetical protein
1147	 32.97	-1	1284646..1284921	+	91	59714324	-	VF_A1141	-	hypothetical protein
1148	 41.55	+1	1285199..1286086	-	295	59714325	-	VF_A1142	-	LysR family transcriptional regulator
1149	 37.37	0	1286223..1286693	+	156	59714326	-	VF_A1143	-	hypothetical protein
1150	 43.07	+1	1286763..1287101	-	112	59714327	-	VF_A1144	-	putative cytoplasmic protein
1151	 38.33	0	1287309..1287788	-	159	59714328	-	VF_A1145	-	hypothetical protein
1152	 39.63	0	1288237..1289220	+	327	59714329	ybcF	VF_A1146	-	carbamate kinase
1153	 37.84	0	1289296..1290093	-	265	59714330	ybiV	VF_A1147	-	hydrolase
1154	 40.39	0	1290190..1291152	-	320	59714331	ycjZ	VF_A1148	-	LysR family transcriptional regulator
1155	 43.61	+1	1291345..1294497	-	1050	59714332	acrF	VF_A1149	-	multidrug efflux system protein
1156	 42.63	+1	1294499..1295617	-	372	172087825	acrA	VF_A1152	-	multidrug efflux system
1157	 37.81	0	1295795..1296754	-	319	59714336	ybiN	VF_A1153	-	putative SAM-dependent methyltransferase
1158	 38.10	0	1296867..1297223	-	118	59714337	yibL	VF_A1154	-	hypothetical protein
1159	 41.55	+1	1297310..1297723	+	137	59714338	yaeJ	VF_A1155	-	hypothetical protein
1160	 37.56	0	1297723..1299639	+	638	172087826	-	VF_A1156	-	ATP-dependent DNA helicase RecQ
1161	 38.82	0	1299749..1301389	+	546	59714341	-	VF_A1158	-	putative cytoplasmic protein
1162	 38.27	0	1301467..1302660	-	397	59714342	ydhC	VF_A1159	-	inner membrane transport protein YdhC
1163	 40.92	0	1302791..1303699	+	302	59714343	ydhB	VF_A1160	-	putative DNA-binding transcriptional regulator
1164	 40.41	0	1303770..1304405	-	211	59714344	pdxH	VF_A1161	-	pyridoxamine 5'-phosphate oxidase
1165	 41.53	+1	1304524..1316325	-	3933	59714345	rtxA2	VF_A1162	-	RTX repeat-containing calcium-binding cytotoxin RtxA2
1166	 37.43	0	1316865..1318181	+	438	59714346	-	VF_A1163	-	outer membrane protein
1167	 38.75	0	1318184..1318792	+	202	59714347	-	VF_A1164	-	outer membrane porin F
1168	 36.70	0	1318864..1321002	-	712	59714348	rtxB	VF_A1165	-	ATP-binding protein, putative RTX transport secretion component RtxB
1169	 34.63	0	1320980..1322905	-	641	59714349	-	VF_A1166	-	GGDEF/EAL domain-containing protein
1170	 35.14	0	1322912..1323577	-	221	59714350	-	VF_A1167	-	hypothetical protein
1171	 35.27	0	1323601..1324992	-	463	59714351	rtxD	VF_A1168	-	putative RTX transport membrane fusion protein RtxD
1172	 36.62	0	1325198..1327327	-	709	59714352	ypfI	VF_A1169	-	hydrolase
1173	 34.38	0	1327466..1328038	+	190	59714353	-	VF_A1170	-	hypothetical protein
1174	 39.18	0	1328112..1329086	-	324	59714354	-	VF_A1171	-	ParB family protein
1175	 37.14	0	1329090..1330325	-	411	59714355	-	VF_A1172	-	ParA family protein
37.27	MEAN

3.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.