IslandPathversion 1.0

IslandPath Analysis: Vibrio fischeri ES114



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.27 STD DEV: 3.84
Vibrio fischeri ES114 chromosome II, complete sequence - 1..1330333
1175 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1012	 39.88	0	1131057..1132613	+	518	59714190	yidJ	VF_A1007	-	sulfatase/phosphatase
1013	 37.17	0	1132693..1133421	+	242	172087822	-	VF_A1008	-	hypothetical protein
1014	 41.94	+1	1133541..1136201	-	886	59714193	-	VF_A1010	-	beta-hexosaminidase
1015	 35.83	0	1136705..1137184	+	159	59714194	ycdZ	VF_A1011	-	inner membrane protein
1016	 34.56	0	1137803..1138702	-	299	59714195	ydeH	VF_A1012	-	two component response regulator protein
1017	 31.52	-1	1138869..1139198	+	109	59714196	-	VF_A1013	-	hypothetical protein
1018	 28.65	-2	1139269..1140849	-	526	59714197	-	VF_A1014	-	EAL domain-containing protein
1019	 32.43	-1	1140896..1141780	-	294	59714198	rpoQ	VF_A1015	-	sigma-Q factor RpoQ, quorum-sensing regulated RpoS-like sigma subunit
1020	 31.06	-1	1142230..1144824	+	864	59714199	-	VF_A1016	-	two component sensory histidine kinase
1021	 31.30	-1	1144834..1146552	+	572	59714200	-	VF_A1017	-	two component response regulator
1022	 37.30	0	1146609..1147112	-	167	59714201	-	VF_A1018	-	putative lipoprotein
1023	 38.20	0	1147075..1149189	-	704	59714202	-	VF_A1019	-	putative cytoplasmic protein
1024	 35.53	0	1149604..1149921	+	105	59714203	sypA	VF_A1020	-	putative sulphate transporter, anti-sigma factor antagonist
1025	 40.24	0	1149970..1150794	+	274	59714204	sypB	VF_A1021	-	outer membrane protein
1026	 40.58	0	1150799..1152910	+	703	59714205	sypC	VF_A1022	-	periplasmic protein involved in polysaccharide export
1027	 35.17	0	1152910..1153617	+	235	59714206	sypD	VF_A1023	-	ATPase involved in chromosome partitioning
1028	 36.89	0	1153620..1155137	+	505	59714207	sypE	VF_A1024	-	two-component response regulator, sigma factor PP2C-like phosphatase
1029	 35.03	0	1155165..1157465	+	766	59714208	sypF	VF_A1025	-	two-component hybrid sensor histidine kinase
1030	 40.45	0	1157508..1159010	+	500	59714209	sypG	VF_A1026	-	sigma-54 dependent transcriptional regulator
1031	 38.25	0	1158994..1160010	+	338	59714210	sypH	VF_A1027	-	glycosyl transferases group 1
1032	 37.49	0	1160171..1161445	+	424	59714211	sypI	VF_A1028	-	glycosyl transferases group 1
1033	 36.00	0	1161438..1162601	+	387	59714212	sypJ	VF_A1029	-	glycosyl transferases group 1
1034	 35.69	0	1162598..1164040	+	480	59714213	sypK	VF_A1030	-	oligosaccharide translocase
1035	 38.17	0	1164037..1165422	+	461	59714214	sypL	VF_A1031	-	polysaccharide ligase
1036	 41.93	+1	1165569..1166324	+	251	59714215	sypM	VF_A1032	-	acetyltransferase
1037	 37.91	0	1166314..1167450	+	378	59714216	sypN	VF_A1033	-	glycosyltransferase
1038	 39.80	0	1167447..1168946	+	499	59714217	sypO	VF_A1034	-	chain length regulator (capsular polysaccharide biosynthesis)
1039	 34.71	0	1169102..1170190	+	362	59714218	sypP	VF_A1035	-	glycosyltransferase
1040	 34.93	0	1170187..1171374	+	395	59714219	sypQ	VF_A1036	-	glycosyltransferase
1041	 36.28	0	1171389..1172033	+	214	59714220	sypR	VF_A1037	-	sugar transferase
1042	 35.45	0	1172254..1174146	+	630	59714221	-	VF_A1038	-	EAL/GGDEF domain-containing protein
1043	 38.65	0	1174219..1174782	+	187	59714222	-	VF_A1039	-	hypothetical protein
1044	 38.60	0	1174823..1175050	+	75	59714223	-	VF_A1040	-	glutaredoxin
1045	 31.45	-1	1175153..1175524	-	123	59714224	-	VF_A1041	-	protein YgiW precursor
1046	 41.71	+1	1175872..1178331	-	819	59714225	ybbP	VF_A1042	-	inner membrane protein
1047	 40.27	0	1178333..1179010	-	225	59714226	ybbA	VF_A1043	-	ABC transporter ATP-binding protein
1048	 37.89	0	1179169..1179783	+	204	59714227	tesA	VF_A1044	-	multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1
1049	 38.10	0	1179843..1180241	-	132	59714228	-	VF_A1045	-	hypothetical protein
1050	 40.23	0	1180303..1181172	+	289	59714229	hdfR	VF_A1046	-	DNA-binding transcriptional regulator
1051	 40.89	0	1181533..1182696	+	387	59714230	-	VF_A1047	-	magnesium transporter MgtE
1052	 38.17	0	1182759..1183688	-	309	59714231	-	VF_A1048	-	LysR family transcriptional regulator
1053	 40.64	0	1183833..1184954	+	373	59714232	nemA	VF_A1049	-	N-ethylmaleimide reductase, FMN-linked
1054	 35.61	0	1184951..1185742	+	263	59714233	-	VF_A1050	-	glycine betaine-binding protein
1055	 38.89	0	1185818..1186663	-	281	59714234	-	VF_A1051	-	universal stress protein
1056	 39.72	0	1186674..1188161	-	495	59714235	-	VF_A1052	-	sulfate transporter
1057	 37.36	0	1188622..1189143	+	173	59714236	-	VF_A1053	-	MerR family transcriptional regulator
1058	 35.65	0	1189221..1189652	-	143	59714237	yjaB	VF_A1054	-	acetyltransferase
1059	 38.13	0	1189706..1190581	-	291	59714238	-	VF_A1055	-	drug/metabolite exporter family protein
1060	 41.79	+1	1190825..1191214	+	129	59714239	-	VF_A1056	-	putative lipoprotein
1061	 40.53	0	1191299..1193161	-	620	59714240	-	VF_A1057	-	phosphatase
1062	 32.32	-1	1193404..1193799	+	131	59714241	qsrP	VF_A1058	-	LuxR-regulated periplasmic protein QsrP
1063	 37.51	0	1193854..1195338	-	494	59714242	-	VF_A1059	-	hypothetical protein
1064	 38.16	0	1195357..1196661	-	434	59714243	-	VF_A1060	-	hypothetical protein
1065	 34.21	0	1196803..1197717	+	304	59714244	-	VF_A1061	-	LysR family transcriptional regulator
1066	 37.65	0	1197761..1199035	-	424	59714245	-	VF_A1062	-	transporter
1067	 39.24	0	1199301..1199774	+	157	59714246	-	VF_A1063	-	MarR family transcriptional regulator
1068	 36.50	0	1199875..1200885	+	336	59714247	-	VF_A1064	-	transporter
1069	 37.05	0	1201057..1202025	-	322	59714248	-	VF_A1065	-	hypothetical protein
1070	 37.44	0	1202264..1203163	-	299	59714249	-	VF_A1066	-	LysR family transcriptional regulator
1071	 39.41	0	1203292..1203966	+	224	59714250	-	VF_A1067	-	hypothetical protein
1072	 38.21	0	1204028..1204765	-	245	59714251	pepE	VF_A1068	-	peptidase E
1073	 29.26	-2	1205151..1206746	-	531	59714252	-	VF_A1069	-	methyl-accepting chemotaxis protein
1074	 27.98	-2	1206786..1207028	-	80	59714253	-	VF_A1070	-	hypothetical protein
1075	 29.41	-2	1207108..1208637	-	509	59714254	-	VF_A1071	-	methyl-accepting chemotaxis protein, putative aerotaxis receptor
1076	 36.00	0	1208933..1210507	+	524	59714255	-	VF_A1072	-	methyl-accepting chemotaxis protein
1077	 24.59	-2	1210837..1212438	+	533	59714256	-	VF_A1073	-	methyl-accepting chemotaxis protein
1078	 29.50	-2	1212467..1213222	+	251	59714257	acfC	VF_A1074	-	accessory colonization factor AcfC
1079	 33.98	0	1213688..1214767	-	359	59714258	-	VF_A1075	-	heptosyltransferase
1080	 26.19	-2	1214785..1215498	-	237	59714259	-	VF_A1076	-	EAL domain-containing protein
1081	 41.14	+1	1216449..1217306	+	285	59714260	-	VF_A1077	-	RIO1 protein
1082	 37.21	0	1217338..1217982	-	214	59714261	-	VF_A1078	-	acetyltransferase/hydrolase family protein
1083	 39.03	0	1218104..1219192	-	362	59714262	ydiK	VF_A1079	-	inner membrane protein
1084	 37.84	0	1219279..1220166	-	295	59714263	-	VF_A1080	-	hypothetical protein
1085	 19.05	-2	1220604..1221212	-	202	59714264	-	VF_A1081	-	hypothetical protein
1086	 21.48	-2	1221421..1222230	+	269	59714265	-	VF_A1082	-	AraC family transcriptional regulator
1087	 23.01	-2	1222827..1223417	+	196	59714266	-	VF_A1083	-	hypothetical protein
1088	 27.36	-2	1223893..1225767	+	624	59714267	-	VF_A1084	-	methyl-accepting chemotaxis protein
1089	 40.94	0	1225797..1225967	-	56	59714268	-	VF_A1085	-	hypothetical protein
1090	 36.81	0	1226101..1226991	+	296	59714269	-	VF_A1086	-	LysR family transcriptional regulator
1091	 39.08	0	1227036..1227122	-	28	172087823	-	VF_A1195	-	hypothetical protein
1092	 40.17	0	1227451..1228503	+	350	59714270	-	VF_A1087	-	ABC transporter substrate-binding protein
1093	 39.83	0	1228513..1229328	+	271	59714271	-	VF_A1088	-	hypothetical protein
1094	 38.63	0	1229325..1230212	+	295	59714272	-	VF_A1089	-	ABC transporter permease protein
1095	 37.79	0	1230199..1230984	+	261	59714273	-	VF_A1090	-	ABC transporter permease protein
1096	 37.65	0	1230984..1232003	+	339	59714274	afuC	VF_A1091	-	CP4-6 prophage; ferric transporter subunit
1097	 35.14	0	1232006..1232671	+	221	59714275	-	VF_A1092	-	hypothetical protein
1098	 28.24	-2	1232706..1232960	-	84	59714276	-	VF_A1093	-	hypothetical protein
1099	 41.43	+1	1233192..1233401	-	69	59714277	cspG	VF_A1094	-	DNA-binding transcriptional regulator
1100	 34.99	0	1233751..1234653	-	300	59714278	hvnA	VF_A1095	-	halovibrin HvnA
1101	 39.79	0	1234669..1236789	-	706	59714279	-	VF_A1096	-	hypothetical protein
1102	 37.84	0	1236884..1238701	-	605	59714280	-	VF_A1097	-	hypothetical protein
1103	 36.16	0	1238792..1239994	-	400	59714281	-	VF_A1098	-	hypothetical protein
1104	 39.03	0	1240134..1242011	-	625	59714282	-	VF_A1099	-	putative lipoprotein
1105	 40.51	0	1242013..1242987	-	324	59714283	ompA	VF_A1100	-	outer membrane protein A
1106	 28.37	-2	1243121..1243402	-	93	59714284	-	VF_A1101	-	hypothetical protein
1107	 35.20	0	1243849..1244652	-	267	59714285	-	VF_A1102	-	phage integrase family site specific recombinase
1108	 40.06	0	1244918..1245928	+	336	59714286	-	VF_A1103	-	multidrug resistance protein A
1109	 37.69	0	1245925..1247394	+	489	59714287	-	VF_A1104	-	multidrug resistance protein B
1110	 38.34	0	1247564..1248442	+	292	59714288	hvnC	VF_A1105	-	halovibrin HvnC
1111	 34.26	0	1248597..1248812	+	71	59714289	-	VF_A1106	-	hypothetical protein
37.27	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.