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Vibrio fischeri ES114 chromosome II, complete sequence - 1..1330333 1175 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 980 38.36 0 1095602..1096138 + 178 59714158 - VF_A0975 - adenosyltransferase 981 32.39 -1 1096372..1097964 + 530 59714159 - VF_A0976 - GGDEF domain-containing protein 982 38.38 0 1097990..1099198 - 402 59714160 ynfM VF_A0977 - transporter 983 38.51 0 1099285..1100154 + 289 59714161 - VF_A0978 - LysR family transcriptional regulator 984 35.78 0 1100366..1100977 + 203 59714162 - VF_A0979 - hypothetical protein 985 30.73 -1 1101283..1101666 + 127 59714163 - VF_A0980 - hypothetical protein 986 30.40 -1 1101705..1101977 - 90 59714164 - VF_A0981 - hypothetical protein 987 36.74 0 1101998..1102849 - 283 59714165 - VF_A0982 - hypothetical protein 988 28.42 -2 1102865..1103413 - 182 59714166 - VF_A0983 - hypothetical protein 989 28.26 -2 1103475..1104932 + 485 59714167 yfhD VF_A0984 - transglycosylase 990 25.78 -2 1104944..1106161 + 405 59714168 - VF_A0985 - putative lipoprotein 991 37.11 0 1106235..1106816 - 193 59714169 - VF_A0986 - 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme 992 40.55 0 1106806..1107456 - 216 59714170 - VF_A0987 - keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase 993 40.29 0 1107446..1108408 - 320 59714171 kdgK VF_A0988 - ketodeoxygluconokinase 994 39.88 0 1108505..1109359 - 284 59714172 kbaY VF_A0989 - tagatose-bisphosphate aldolase 995 41.34 +1 1109616..1112264 - 882 59714173 - VF_A0990 - trimethylamine-N-oxide reductase 996 37.29 0 1112476..1113993 - 505 59714174 - VF_A0991 - hypothetical protein 997 40.64 0 1114064..1115677 - 537 59714175 ydeN VF_A0992 - hypothetical protein 998 38.04 0 1115718..1116950 - 410 59714176 - VF_A0993 - arylsulfatase regulator (Fe-S oxidoreductase) 999 37.19 0 1117171..1119579 + 802 59714177 - VF_A0994 - hyaluronate lyase precursor 1000 34.06 0 1119734..1120564 + 276 59714178 - VF_A0995 - high-affinity iron permease 1001 41.24 +1 1120650..1121699 - 349 59714179 - VF_A0996 - hypothetical protein 1002 42.20 +1 1121725..1122480 - 251 59714180 kduD VF_A0997 - 2-deoxy-D-gluconate 3-dehydrogenase 1003 40.91 0 1122550..1123380 - 276 59714181 kduI VF_A0998 - 5-keto-4-deoxyuronate isomerase 1004 43.39 +1 1123482..1124624 - 380 59714182 nagA3 VF_A0999 - N-acetylglucosamine-6-phosphate deacetylase 1005 38.81 0 1124626..1125063 - 145 59714183 - VF_A1000 - PTS system, N-acetylgalactosamine-specific IIA component 1006 40.20 0 1125152..1126069 - 305 59714184 agaD VF_A1001 - N-acetylgalactosamine-specific enzyme IID component of PTS 1007 42.02 +1 1126059..1126829 - 256 59714185 agaC VF_A1002 - PTS system, N-acetylgalactosamine-specific IIC component 1008 40.92 0 1126840..1127340 - 166 59714186 agaV VF_A1003 - N-acetylgalactosamine-specific enzyme IIB component of PTS 1009 38.12 0 1127355..1128524 - 389 59714187 agaS VF_A1004 - tagatose-6-phosphate ketose/aldose isomerase 1010 41.32 +1 1128521..1129822 - 433 59714188 kbaZ VF_A1005 - tagatose 6-phosphate aldolase 1, kbaZ subunit 1011 40.41 0 1129870..1130646 - 258 59714189 agaR VF_A1006 - DNA-binding transcriptional dual regulator 1012 39.88 0 1131057..1132613 + 518 59714190 yidJ VF_A1007 - sulfatase/phosphatase 1013 37.17 0 1132693..1133421 + 242 172087822 - VF_A1008 - hypothetical protein 1014 41.94 +1 1133541..1136201 - 886 59714193 - VF_A1010 - beta-hexosaminidase 1015 35.83 0 1136705..1137184 + 159 59714194 ycdZ VF_A1011 - inner membrane protein 1016 34.56 0 1137803..1138702 - 299 59714195 ydeH VF_A1012 - two component response regulator protein 1017 31.52 -1 1138869..1139198 + 109 59714196 - VF_A1013 - hypothetical protein 1018 28.65 -2 1139269..1140849 - 526 59714197 - VF_A1014 - EAL domain-containing protein 1019 32.43 -1 1140896..1141780 - 294 59714198 rpoQ VF_A1015 - sigma-Q factor RpoQ, quorum-sensing regulated RpoS-like sigma subunit 1020 31.06 -1 1142230..1144824 + 864 59714199 - VF_A1016 - two component sensory histidine kinase 1021 31.30 -1 1144834..1146552 + 572 59714200 - VF_A1017 - two component response regulator 1022 37.30 0 1146609..1147112 - 167 59714201 - VF_A1018 - putative lipoprotein 1023 38.20 0 1147075..1149189 - 704 59714202 - VF_A1019 - putative cytoplasmic protein 1024 35.53 0 1149604..1149921 + 105 59714203 sypA VF_A1020 - putative sulphate transporter, anti-sigma factor antagonist 1025 40.24 0 1149970..1150794 + 274 59714204 sypB VF_A1021 - outer membrane protein 1026 40.58 0 1150799..1152910 + 703 59714205 sypC VF_A1022 - periplasmic protein involved in polysaccharide export 1027 35.17 0 1152910..1153617 + 235 59714206 sypD VF_A1023 - ATPase involved in chromosome partitioning 1028 36.89 0 1153620..1155137 + 505 59714207 sypE VF_A1024 - two-component response regulator, sigma factor PP2C-like phosphatase 1029 35.03 0 1155165..1157465 + 766 59714208 sypF VF_A1025 - two-component hybrid sensor histidine kinase 1030 40.45 0 1157508..1159010 + 500 59714209 sypG VF_A1026 - sigma-54 dependent transcriptional regulator 1031 38.25 0 1158994..1160010 + 338 59714210 sypH VF_A1027 - glycosyl transferases group 1 1032 37.49 0 1160171..1161445 + 424 59714211 sypI VF_A1028 - glycosyl transferases group 1 1033 36.00 0 1161438..1162601 + 387 59714212 sypJ VF_A1029 - glycosyl transferases group 1 1034 35.69 0 1162598..1164040 + 480 59714213 sypK VF_A1030 - oligosaccharide translocase 1035 38.17 0 1164037..1165422 + 461 59714214 sypL VF_A1031 - polysaccharide ligase 1036 41.93 +1 1165569..1166324 + 251 59714215 sypM VF_A1032 - acetyltransferase 1037 37.91 0 1166314..1167450 + 378 59714216 sypN VF_A1033 - glycosyltransferase 1038 39.80 0 1167447..1168946 + 499 59714217 sypO VF_A1034 - chain length regulator (capsular polysaccharide biosynthesis) 1039 34.71 0 1169102..1170190 + 362 59714218 sypP VF_A1035 - glycosyltransferase 1040 34.93 0 1170187..1171374 + 395 59714219 sypQ VF_A1036 - glycosyltransferase 1041 36.28 0 1171389..1172033 + 214 59714220 sypR VF_A1037 - sugar transferase 1042 35.45 0 1172254..1174146 + 630 59714221 - VF_A1038 - EAL/GGDEF domain-containing protein 1043 38.65 0 1174219..1174782 + 187 59714222 - VF_A1039 - hypothetical protein 1044 38.60 0 1174823..1175050 + 75 59714223 - VF_A1040 - glutaredoxin 1045 31.45 -1 1175153..1175524 - 123 59714224 - VF_A1041 - protein YgiW precursor 1046 41.71 +1 1175872..1178331 - 819 59714225 ybbP VF_A1042 - inner membrane protein 1047 40.27 0 1178333..1179010 - 225 59714226 ybbA VF_A1043 - ABC transporter ATP-binding protein 1048 37.89 0 1179169..1179783 + 204 59714227 tesA VF_A1044 - multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 1049 38.10 0 1179843..1180241 - 132 59714228 - VF_A1045 - hypothetical protein 1050 40.23 0 1180303..1181172 + 289 59714229 hdfR VF_A1046 - DNA-binding transcriptional regulator 1051 40.89 0 1181533..1182696 + 387 59714230 - VF_A1047 - magnesium transporter MgtE 1052 38.17 0 1182759..1183688 - 309 59714231 - VF_A1048 - LysR family transcriptional regulator 1053 40.64 0 1183833..1184954 + 373 59714232 nemA VF_A1049 - N-ethylmaleimide reductase, FMN-linked 1054 35.61 0 1184951..1185742 + 263 59714233 - VF_A1050 - glycine betaine-binding protein 1055 38.89 0 1185818..1186663 - 281 59714234 - VF_A1051 - universal stress protein 1056 39.72 0 1186674..1188161 - 495 59714235 - VF_A1052 - sulfate transporter 1057 37.36 0 1188622..1189143 + 173 59714236 - VF_A1053 - MerR family transcriptional regulator 1058 35.65 0 1189221..1189652 - 143 59714237 yjaB VF_A1054 - acetyltransferase 1059 38.13 0 1189706..1190581 - 291 59714238 - VF_A1055 - drug/metabolite exporter family protein 1060 41.79 +1 1190825..1191214 + 129 59714239 - VF_A1056 - putative lipoprotein 1061 40.53 0 1191299..1193161 - 620 59714240 - VF_A1057 - phosphatase 1062 32.32 -1 1193404..1193799 + 131 59714241 qsrP VF_A1058 - LuxR-regulated periplasmic protein QsrP 1063 37.51 0 1193854..1195338 - 494 59714242 - VF_A1059 - hypothetical protein 1064 38.16 0 1195357..1196661 - 434 59714243 - VF_A1060 - hypothetical protein 1065 34.21 0 1196803..1197717 + 304 59714244 - VF_A1061 - LysR family transcriptional regulator 1066 37.65 0 1197761..1199035 - 424 59714245 - VF_A1062 - transporter 1067 39.24 0 1199301..1199774 + 157 59714246 - VF_A1063 - MarR family transcriptional regulator 1068 36.50 0 1199875..1200885 + 336 59714247 - VF_A1064 - transporter 1069 37.05 0 1201057..1202025 - 322 59714248 - VF_A1065 - hypothetical protein 1070 37.44 0 1202264..1203163 - 299 59714249 - VF_A1066 - LysR family transcriptional regulator 1071 39.41 0 1203292..1203966 + 224 59714250 - VF_A1067 - hypothetical protein 1072 38.21 0 1204028..1204765 - 245 59714251 pepE VF_A1068 - peptidase E 1073 29.26 -2 1205151..1206746 - 531 59714252 - VF_A1069 - methyl-accepting chemotaxis protein 1074 27.98 -2 1206786..1207028 - 80 59714253 - VF_A1070 - hypothetical protein 1075 29.41 -2 1207108..1208637 - 509 59714254 - VF_A1071 - methyl-accepting chemotaxis protein, putative aerotaxis receptor 1076 36.00 0 1208933..1210507 + 524 59714255 - VF_A1072 - methyl-accepting chemotaxis protein 1077 24.59 -2 1210837..1212438 + 533 59714256 - VF_A1073 - methyl-accepting chemotaxis protein 1078 29.50 -2 1212467..1213222 + 251 59714257 acfC VF_A1074 - accessory colonization factor AcfC 1079 33.98 0 1213688..1214767 - 359 59714258 - VF_A1075 - heptosyltransferase 37.27 MEAN 3.84 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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