IslandPathversion 1.0

IslandPath Analysis: Vibrio fischeri ES114



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.27 STD DEV: 3.84
Vibrio fischeri ES114 chromosome II, complete sequence - 1..1330333
1175 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
962	 39.03	0	1075667..1076965	-	432	59714140	yihN	VF_A0957	-	transporter
963	 36.02	0	1077007..1077750	-	247	59714141	glpQ	VF_A0958	-	glycerophosphoryl diester phosphodiesterase GlpQ (UgpQ)
964	 34.04	0	1078131..1080101	-	656	59714142	mifB	VF_A0959	-	diguanylate cyclase (GGDEF), inhibitor of flagellar motility
965	 36.66	0	1080098..1081120	-	340	59714143	mifC	VF_A0960	-	periplasmic protein that regulates MifA/B activity
966	 40.01	0	1081519..1083045	+	508	59714144	yjjI	VF_A0961	-	hypothetical protein
967	 38.93	0	1083054..1083965	+	303	59714145	yjjW	VF_A0962	-	pyruvate formate lyase activating enzyme
968	 35.69	0	1084109..1085041	-	310	59714146	-	VF_A0963	-	LysR family transcriptional regulator
969	 39.30	0	1085339..1085908	+	189	59714147	-	VF_A0964	-	integral membrane protein
970	 38.35	0	1086011..1086808	+	265	59714148	nfsA	VF_A0965	-	nitroreductase A
971	 41.28	+1	1086873..1088243	+	456	59714149	-	VF_A0966	-	L-serine ammonia-lyase
972	 38.57	0	1088475..1089695	+	406	59714150	-	VF_A0967	-	nucleoside permease NupC
973	 37.92	0	1089718..1090437	+	239	59714151	deoD3	VF_A0968	-	purine nucleoside phosphorylase deoD-type; PNP
974	 38.98	0	1090495..1091841	+	448	59714152	guaD	VF_A0969	-	guanine deaminase
975	 32.86	-1	1091979..1092617	+	212	59714153	-	VF_A0970	-	hypothetical protein
976	 37.95	0	1092630..1093409	-	259	59714154	fecE	VF_A0971	-	vitamin B12 transport ATP-binding protein BtuD
977	 39.87	0	1093406..1094446	-	346	59714155	fecD	VF_A0972	-	KpLE2 phage-like element; iron-dicitrate transporter subunit
978	 37.69	0	1094446..1095363	-	305	59714156	-	VF_A0973	-	ABC transporter, periplasmic component
979	 31.01	-1	1095484..1095612	+	42	59714157	-	VF_A0974	-	hypothetical protein
980	 38.36	0	1095602..1096138	+	178	59714158	-	VF_A0975	-	adenosyltransferase
981	 32.39	-1	1096372..1097964	+	530	59714159	-	VF_A0976	-	GGDEF domain-containing protein
982	 38.38	0	1097990..1099198	-	402	59714160	ynfM	VF_A0977	-	transporter
983	 38.51	0	1099285..1100154	+	289	59714161	-	VF_A0978	-	LysR family transcriptional regulator
984	 35.78	0	1100366..1100977	+	203	59714162	-	VF_A0979	-	hypothetical protein
985	 30.73	-1	1101283..1101666	+	127	59714163	-	VF_A0980	-	hypothetical protein
986	 30.40	-1	1101705..1101977	-	90	59714164	-	VF_A0981	-	hypothetical protein
987	 36.74	0	1101998..1102849	-	283	59714165	-	VF_A0982	-	hypothetical protein
988	 28.42	-2	1102865..1103413	-	182	59714166	-	VF_A0983	-	hypothetical protein
989	 28.26	-2	1103475..1104932	+	485	59714167	yfhD	VF_A0984	-	transglycosylase
990	 25.78	-2	1104944..1106161	+	405	59714168	-	VF_A0985	-	putative lipoprotein
991	 37.11	0	1106235..1106816	-	193	59714169	-	VF_A0986	-	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme
992	 40.55	0	1106806..1107456	-	216	59714170	-	VF_A0987	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
993	 40.29	0	1107446..1108408	-	320	59714171	kdgK	VF_A0988	-	ketodeoxygluconokinase
994	 39.88	0	1108505..1109359	-	284	59714172	kbaY	VF_A0989	-	tagatose-bisphosphate aldolase
995	 41.34	+1	1109616..1112264	-	882	59714173	-	VF_A0990	-	trimethylamine-N-oxide reductase
996	 37.29	0	1112476..1113993	-	505	59714174	-	VF_A0991	-	hypothetical protein
997	 40.64	0	1114064..1115677	-	537	59714175	ydeN	VF_A0992	-	hypothetical protein
998	 38.04	0	1115718..1116950	-	410	59714176	-	VF_A0993	-	arylsulfatase regulator (Fe-S oxidoreductase)
999	 37.19	0	1117171..1119579	+	802	59714177	-	VF_A0994	-	hyaluronate lyase precursor
1000	 34.06	0	1119734..1120564	+	276	59714178	-	VF_A0995	-	high-affinity iron permease
1001	 41.24	+1	1120650..1121699	-	349	59714179	-	VF_A0996	-	hypothetical protein
1002	 42.20	+1	1121725..1122480	-	251	59714180	kduD	VF_A0997	-	2-deoxy-D-gluconate 3-dehydrogenase
1003	 40.91	0	1122550..1123380	-	276	59714181	kduI	VF_A0998	-	5-keto-4-deoxyuronate isomerase
1004	 43.39	+1	1123482..1124624	-	380	59714182	nagA3	VF_A0999	-	N-acetylglucosamine-6-phosphate deacetylase
1005	 38.81	0	1124626..1125063	-	145	59714183	-	VF_A1000	-	PTS system, N-acetylgalactosamine-specific IIA component
1006	 40.20	0	1125152..1126069	-	305	59714184	agaD	VF_A1001	-	N-acetylgalactosamine-specific enzyme IID component of PTS
1007	 42.02	+1	1126059..1126829	-	256	59714185	agaC	VF_A1002	-	PTS system, N-acetylgalactosamine-specific IIC component
1008	 40.92	0	1126840..1127340	-	166	59714186	agaV	VF_A1003	-	N-acetylgalactosamine-specific enzyme IIB component of PTS
1009	 38.12	0	1127355..1128524	-	389	59714187	agaS	VF_A1004	-	tagatose-6-phosphate ketose/aldose isomerase
1010	 41.32	+1	1128521..1129822	-	433	59714188	kbaZ	VF_A1005	-	tagatose 6-phosphate aldolase 1, kbaZ subunit
1011	 40.41	0	1129870..1130646	-	258	59714189	agaR	VF_A1006	-	DNA-binding transcriptional dual regulator
1012	 39.88	0	1131057..1132613	+	518	59714190	yidJ	VF_A1007	-	sulfatase/phosphatase
1013	 37.17	0	1132693..1133421	+	242	172087822	-	VF_A1008	-	hypothetical protein
1014	 41.94	+1	1133541..1136201	-	886	59714193	-	VF_A1010	-	beta-hexosaminidase
1015	 35.83	0	1136705..1137184	+	159	59714194	ycdZ	VF_A1011	-	inner membrane protein
1016	 34.56	0	1137803..1138702	-	299	59714195	ydeH	VF_A1012	-	two component response regulator protein
1017	 31.52	-1	1138869..1139198	+	109	59714196	-	VF_A1013	-	hypothetical protein
1018	 28.65	-2	1139269..1140849	-	526	59714197	-	VF_A1014	-	EAL domain-containing protein
1019	 32.43	-1	1140896..1141780	-	294	59714198	rpoQ	VF_A1015	-	sigma-Q factor RpoQ, quorum-sensing regulated RpoS-like sigma subunit
1020	 31.06	-1	1142230..1144824	+	864	59714199	-	VF_A1016	-	two component sensory histidine kinase
1021	 31.30	-1	1144834..1146552	+	572	59714200	-	VF_A1017	-	two component response regulator
1022	 37.30	0	1146609..1147112	-	167	59714201	-	VF_A1018	-	putative lipoprotein
1023	 38.20	0	1147075..1149189	-	704	59714202	-	VF_A1019	-	putative cytoplasmic protein
1024	 35.53	0	1149604..1149921	+	105	59714203	sypA	VF_A1020	-	putative sulphate transporter, anti-sigma factor antagonist
1025	 40.24	0	1149970..1150794	+	274	59714204	sypB	VF_A1021	-	outer membrane protein
1026	 40.58	0	1150799..1152910	+	703	59714205	sypC	VF_A1022	-	periplasmic protein involved in polysaccharide export
1027	 35.17	0	1152910..1153617	+	235	59714206	sypD	VF_A1023	-	ATPase involved in chromosome partitioning
1028	 36.89	0	1153620..1155137	+	505	59714207	sypE	VF_A1024	-	two-component response regulator, sigma factor PP2C-like phosphatase
1029	 35.03	0	1155165..1157465	+	766	59714208	sypF	VF_A1025	-	two-component hybrid sensor histidine kinase
1030	 40.45	0	1157508..1159010	+	500	59714209	sypG	VF_A1026	-	sigma-54 dependent transcriptional regulator
1031	 38.25	0	1158994..1160010	+	338	59714210	sypH	VF_A1027	-	glycosyl transferases group 1
1032	 37.49	0	1160171..1161445	+	424	59714211	sypI	VF_A1028	-	glycosyl transferases group 1
1033	 36.00	0	1161438..1162601	+	387	59714212	sypJ	VF_A1029	-	glycosyl transferases group 1
1034	 35.69	0	1162598..1164040	+	480	59714213	sypK	VF_A1030	-	oligosaccharide translocase
1035	 38.17	0	1164037..1165422	+	461	59714214	sypL	VF_A1031	-	polysaccharide ligase
1036	 41.93	+1	1165569..1166324	+	251	59714215	sypM	VF_A1032	-	acetyltransferase
1037	 37.91	0	1166314..1167450	+	378	59714216	sypN	VF_A1033	-	glycosyltransferase
1038	 39.80	0	1167447..1168946	+	499	59714217	sypO	VF_A1034	-	chain length regulator (capsular polysaccharide biosynthesis)
1039	 34.71	0	1169102..1170190	+	362	59714218	sypP	VF_A1035	-	glycosyltransferase
1040	 34.93	0	1170187..1171374	+	395	59714219	sypQ	VF_A1036	-	glycosyltransferase
1041	 36.28	0	1171389..1172033	+	214	59714220	sypR	VF_A1037	-	sugar transferase
1042	 35.45	0	1172254..1174146	+	630	59714221	-	VF_A1038	-	EAL/GGDEF domain-containing protein
1043	 38.65	0	1174219..1174782	+	187	59714222	-	VF_A1039	-	hypothetical protein
1044	 38.60	0	1174823..1175050	+	75	59714223	-	VF_A1040	-	glutaredoxin
1045	 31.45	-1	1175153..1175524	-	123	59714224	-	VF_A1041	-	protein YgiW precursor
1046	 41.71	+1	1175872..1178331	-	819	59714225	ybbP	VF_A1042	-	inner membrane protein
1047	 40.27	0	1178333..1179010	-	225	59714226	ybbA	VF_A1043	-	ABC transporter ATP-binding protein
1048	 37.89	0	1179169..1179783	+	204	59714227	tesA	VF_A1044	-	multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1
1049	 38.10	0	1179843..1180241	-	132	59714228	-	VF_A1045	-	hypothetical protein
1050	 40.23	0	1180303..1181172	+	289	59714229	hdfR	VF_A1046	-	DNA-binding transcriptional regulator
1051	 40.89	0	1181533..1182696	+	387	59714230	-	VF_A1047	-	magnesium transporter MgtE
1052	 38.17	0	1182759..1183688	-	309	59714231	-	VF_A1048	-	LysR family transcriptional regulator
1053	 40.64	0	1183833..1184954	+	373	59714232	nemA	VF_A1049	-	N-ethylmaleimide reductase, FMN-linked
1054	 35.61	0	1184951..1185742	+	263	59714233	-	VF_A1050	-	glycine betaine-binding protein
1055	 38.89	0	1185818..1186663	-	281	59714234	-	VF_A1051	-	universal stress protein
1056	 39.72	0	1186674..1188161	-	495	59714235	-	VF_A1052	-	sulfate transporter
1057	 37.36	0	1188622..1189143	+	173	59714236	-	VF_A1053	-	MerR family transcriptional regulator
1058	 35.65	0	1189221..1189652	-	143	59714237	yjaB	VF_A1054	-	acetyltransferase
1059	 38.13	0	1189706..1190581	-	291	59714238	-	VF_A1055	-	drug/metabolite exporter family protein
1060	 41.79	+1	1190825..1191214	+	129	59714239	-	VF_A1056	-	putative lipoprotein
1061	 40.53	0	1191299..1193161	-	620	59714240	-	VF_A1057	-	phosphatase
37.27	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.