IslandPath Analysis: Vibrio cholerae O395



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.83   STD DEV: 3.88
Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
49	 52.31	+1	47982..48608	-	208	147674048	-	VC0395_A0051	-	putative glycerol-3-phosphate acyltransferase PlsY
50	 53.33	+1	48761..49150	+	129	147674486	-	VC0395_A0052	-	putative dihydroneopterin aldolase FolB
51	 48.72	0	49147..49653	+	168	147673898	folK-1	VC0395_A0053	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
52	 45.77	0	49650..50453	+	267	147674526	-	VC0395_A0054	-	undecaprenyl pyrophosphate phosphatase
53	 49.14	0	50562..50852	+	96	147674770	ftsB	VC0395_A0055	-	cell division protein FtsB
54	 52.50	+1	50849..51547	+	232	147673316	ispD	VC0395_A0056	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
55	 51.78	+1	51544..52020	+	158	147673364	ispF	VC0395_A0057	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
56	 50.55	0	52050..53135	+	361	147673999	truD	VC0395_A0058	-	tRNA pseudouridine synthase D
57	 49.87	0	53098..53889	+	263	147674427	surE	VC0395_A0059	-	stationary phase survival protein SurE
58	 51.04	0	53882..54508	+	208	147675360	pcm	VC0395_A0060	-	protein-L-isoaspartate O-methyltransferase
59	 44.12	0	54508..55443	+	311	147673872	nlpD	VC0395_A0061	-	lipoprotein NlpD
60	 46.92	0	55517..56524	+	335	147674644	rpoS	VC0395_A0062	-	RNA polymerase sigma factor RpoS
61	 52.18	+1	56617..59205	-	862	147675773	mutS	VC0395_A0063	-	DNA mismatch repair protein
62	 52.14	+1	59473..60360	-	295	147673090	cysM	VC0395_A0064	-	cysteine synthase B
63	 48.90	0	60744..61745	+	333	147673555	cysP	VC0395_A0065	-	thiosulfate ABC transporter, periplasmic thiosulfate-binding protein
64	 51.29	0	61822..62673	+	283	147674327	cysT	VC0395_A0066	-	sulfate ABC transporter, permease protein
65	 51.50	0	62685..63548	+	287	147673965	cysW	VC0395_A0067	-	sulfate ABC transporter, permease protein
66	 50.84	0	63545..64675	+	376	147674663	cysA	VC0395_A0068	-	sulfate ABC transporter, ATP-binding protein
67	 51.28	0	64842..65348	+	168	147673308	-	VC0395_A0069	-	CinA family protein
68	 48.08	0	65482..66546	+	354	147673530	recA	VC0395_A0070	-	recombinase A
69	 47.93	0	66679..67137	+	152	147674135	recX	VC0395_A0071	-	recombination regulator RecX
70	 50.87	0	67310..69892	+	860	147675089	alaS	VC0395_A0072	-	alanyl-tRNA synthetase
71	 37.04	-2	69924..70058	+	44	147673460	-	VC0395_A0073	-	hypothetical protein
72	 47.64	0	70096..71283	+	395	147674175	-	VC0395_A0074	-	aspartate kinase
73	 46.97	0	71375..71572	+	65	147674619	csrA	VC0395_A0075	-	carbon storage regulator
74	 50.57	0	73142..73402	+	86	147675352	-	VC0395_A0084	-	oxaloacetate decarboxylase subunit gamma
75	 50.78	0	73431..75224	+	597	147673995	oadA-1	VC0395_A0085	-	pyruvate carboxylase subunit B
76	 51.11	0	75234..76364	+	376	147675475	oadB-1	VC0395_A0086	-	oxaloacetate decarboxylase, beta subunit
77	 51.18	0	76424..77437	+	337	147674535	-	VC0395_A0087	-	quinone oxidoreductase
78	 48.92	0	77431..77892	+	153	147673925	-	VC0395_A0088	-	hypothetical protein
79	 48.90	0	77899..80757	+	952	147673676	-	VC0395_A0089	-	insulinase family protease/insulinase family protease
80	 50.29	0	80869..82443	+	524	147675148	gshA	VC0395_A0090	-	glutamate--cysteine ligase
81	 48.55	0	82492..83010	+	172	147674316	luxS	VC0395_A0091	-	S-ribosylhomocysteinase
82	 46.53	0	83080..84360	-	426	147673693	-	VC0395_A0092	-	hypothetical protein
83	 45.90	0	84443..85246	-	267	147673303	-	VC0395_A0093	-	hypothetical protein
84	 49.93	0	85450..86835	+	461	147674906	ffh	VC0395_A0094	-	signal recognition particle protein
85	 49.40	0	87071..87319	+	82	147674693	rpsP	VC0395_A0095	-	30S ribosomal protein S16
86	 44.32	0	87347..87901	+	184	147674058	rimM	VC0395_A0096	-	16S rRNA-processing protein
87	 49.60	0	87929..88672	+	247	147675311	trmD	VC0395_A0097	-	tRNA (guanine-N(1)-)-methyltransferase
88	 46.61	0	88714..89067	+	117	147674723	rplS	VC0395_A0098	-	50S ribosomal protein L19
89	 49.10	0	89188..90246	-	352	147675045	degS	VC0395_A0099	-	protease DegS
90	 47.92	0	90423..91793	-	456	147673156	htrA	VC0395_A0100	-	protease DO
91	 46.80	0	91922..92359	-	145	147675673	-	VC0395_A0101	-	cytochrome d ubiquinol oxidase subunit III
92	 44.84	0	92513..93616	+	367	147674809	-	VC0395_A0102	-	hypothetical protein
93	 45.69	0	93840..94268	+	142	147674448	rplM	VC0395_A0103	-	50S ribosomal protein L13
94	 48.60	0	94284..94676	+	130	147673670	rpsI	VC0395_A0104	-	30S ribosomal protein S9
95	 47.81	0	95004..95597	+	197	147673531	petA	VC0395_A0105	-	ubiquinol--cytochrome c reductase, iron-sulfur subunit
96	 44.23	0	95597..96862	+	421	147674128	petB	VC0395_A0106	-	ubiquinol--cytochrome c reductase, cytochrome B
97	 44.44	0	96859..97596	+	245	147673543	petC	VC0395_A0107	-	ubiquinol--cytochrome c reductase, cytochrome c1
98	 43.55	-1	97696..98331	+	211	147675668	sspA	VC0395_A0108	-	stringent starvation protein A
99	 46.96	0	98331..98807	+	158	147675024	sspB	VC0395_A0109	-	ClpXP protease specificity-enhancing factor
100	 46.49	0	98875..99444	-	189	147673892	-	VC0395_A0110	-	putative lipoprotein
101	 47.55	0	99447..100037	-	196	147673137	-	VC0395_A0111	-	phosphoheptose isomerase
102	 43.36	-1	100041..100409	-	122	147675260	-	VC0395_A0112	-	hypothetical protein
103	 47.15	0	100396..102357	-	653	147674614	-	VC0395_A0113	-	putative lipoprotein
104	 45.56	0	102271..103137	+	288	147673119	-	VC0395_A0114	-	hypothetical protein
105	 45.11	0	103351..103749	-	132	147673716	-	VC0395_A0115	-	hemagglutinin/protease regulatory protein
106	 49.76	0	103755..103961	-	68	147675695	-	VC0395_A0116	-	hemagglutinin/protease regulatory protein
107	 44.01	0	104257..104790	+	177	147674548	hpt	VC0395_A0117	-	hypoxanthine phosphoribosyltransferase
108	 46.79	0	104865..105533	-	222	147673800	-	VC0395_A0118	-	putative carbonic anhydrase
109	 50.15	0	105681..107327	+	548	147673337	-	VC0395_A0119	-	sulfate permease family protein
110	 48.26	0	107711..108628	+	305	147675033	-	VC0395_A0120	-	ABC transporter, ATP-binding protein
111	 46.69	0	108634..109404	+	256	147674111	-	VC0395_A0121	-	putative permease
112	 49.89	0	109468..110349	-	293	147674534	panC	VC0395_A0122	-	pantoate--beta-alanine ligase
113	 48.93	0	110360..111154	-	264	147673962	panB	VC0395_A0123	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
114	 51.98	+1	111157..111660	-	167	147673389	folK-2	VC0395_A0124	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
115	 51.75	+1	111657..113030	-	457	147673822	pcnB	VC0395_A0125	-	polyA polymerase
116	 50.84	0	113121..114011	-	296	147673547	-	VC0395_A0126	-	glutamyl-Q tRNA(Asp) synthetase
117	 47.65	0	114085..114531	-	148	147674105	dksA	VC0395_A0127	-	dnaK suppressor protein
118	 48.12	0	114656..115426	-	256	147675081	sfsA	VC0395_A0128	-	sugar fermentation stimulation protein A
119	 51.00	0	115637..116989	+	450	147675683	-	VC0395_A0129	-	hypothetical protein
120	 55.18	+1	117088..119550	+	820	147673788	hrpB	VC0395_A0130	-	ATP-dependent RNA helicase HrpB
121	 51.54	0	119547..121880	+	777	147674464	mrcB	VC0395_A0131	-	penicillin-binding protein 1B
122	 49.80	0	122117..124411	+	764	147675227	-	VC0395_A0132	-	hypothetical protein
123	 51.27	0	124676..127273	+	865	147673282	acnB	VC0395_A0133	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
124	 44.88	0	127428..127808	+	126	147673206	-	VC0395_A0134	-	hypothetical protein
125	 45.90	0	127959..128324	+	121	147675413	glnB-1	VC0395_A0135	-	nitrogen regulatory protein P-II
126	 50.97	0	128340..129575	+	411	147673697	-	VC0395_A0136	-	putative ammonium transporter
127	 45.70	0	129671..130729	+	352	147674279	-	VC0395_A0137	-	iron(III) ABC transporter, periplasmic iron-compound-binding protein
128	 49.14	0	130813..132438	+	541	147674017	-	VC0395_A0138	-	iron(III) ABC transporter, permease protein
129	 51.45	0	132438..133469	+	343	147674471	-	VC0395_A0139	-	iron(III) ABC transporter, ATP-binding protein
130	 49.47	0	133600..135012	-	470	147673470	-	VC0395_A0140	-	putative phosphoglucomutase/phosphomannomutase
131	 50.42	0	135135..137540	-	801	147673254	-	VC0395_A0141	-	cellulose degradation product phosphorylase
132	 49.79	0	137659..139572	-	637	147674312	chb-1	VC0395_A0142	-	beta-N-acetylhexosaminidase
133	 52.66	+1	139569..140453	-	294	147673675	-	VC0395_A0143	-	hypothetical protein
134	 50.09	0	140450..142174	-	574	147673295	-	VC0395_A0144	-	endoglucanase-related protein
135	 49.30	0	142231..143226	-	331	147674358	-	VC0395_A0145	-	peptide ABC transporter, ATP-binding protein
136	 48.48	0	143269..144252	-	327	147675188	-	VC0395_A0146	-	peptide ABC transporter, ATP-binding protein
137	 51.27	0	144255..145280	-	341	147673375	-	VC0395_A0147	-	peptide ABC transporter, permease protein
138	 48.33	0	145283..146269	-	328	147674805	-	VC0395_A0148	-	peptide ABC transporter, permease protein
139	 47.82	0	146439..148109	-	556	147675513	-	VC0395_A0149	-	peptide ABC transporter, periplasmic peptide-binding protein
140	 47.71	0	149020..152553	-	1177	147675649	-	VC0395_A0150	-	sensory box sensor histidine kinase/response regulator
141	 47.90	0	152617..153639	-	340	147673438	-	VC0395_A0151	-	hypothetical protein
142	 46.87	0	153712..154797	-	361	147673733	-	VC0395_A0152	-	putative lipoprotein
143	 45.51	0	154834..154989	+	51	147674509	-	VC0395_A0153	-	hypothetical protein
144	 50.42	0	155051..156349	-	432	147674104	hemL	VC0395_A0154	-	glutamate-1-semialdehyde aminotransferase
145	 43.33	-1	156364..156513	+	49	147675430	-	VC0395_A0155	-	hypothetical protein
146	 45.32	0	156633..156974	+	113	147673412	-	VC0395_A0156	-	iron-sulfur cluster insertion protein ErpA
147	 49.14	0	157072..158172	+	366	147674168	-	VC0395_A0157	-	hypothetical protein
148	 48.91	0	158183..161302	+	1039	147674212	-	VC0395_A0158	-	putative multidrug resistance protein
47.83	MEAN

3.88	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.