IslandPath Analysis: Vibrio cholerae O395



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.83   STD DEV: 3.88
Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
840	 47.17	0	879557..880069	-	170	147674868	-	VC0395_A0869	-	hypothetical protein
841	 46.00	0	880335..881234	-	299	147674372	-	VC0395_A0870	-	putative lipoprotein
842	 48.96	0	881398..882645	+	415	147673608	-	VC0395_A0871	-	CinA family protein
843	 45.49	0	882895..883149	+	84	147675472	-	VC0395_A0872	-	hypothetical protein
844	 45.16	0	883347..883625	-	92	147675378	-	VC0395_A0873	-	putative iron-sulfur cluster-binding protein
845	 46.24	0	883625..884794	-	389	147674333	nrdB	VC0395_A0874	-	ribonucleotide-diphosphate reductase subunit beta
846	 48.82	0	884854..887139	-	761	147674951	nrdA	VC0395_A0875	-	ribonucleotide-diphosphate reductase subunit alpha
847	 48.78	0	887588..888325	-	245	147675156	ubiG	VC0395_A0876	-	3-demethylubiquinone-9 3-methyltransferase
848	 51.17	0	888677..891361	+	894	147673690	gyrA	VC0395_A0877	-	DNA gyrase, subunit A
849	 49.55	0	891574..892572	+	332	147673988	-	VC0395_A0878	-	hypothetical protein
850	 47.11	0	892599..893498	-	299	147674578	-	VC0395_A0879	-	AraC/XylS family transcriptional regulator
851	 48.64	0	893749..894963	+	404	147673481	-	VC0395_A0880	-	hypothetical protein
852	 46.89	0	895146..895322	+	58	147674094	-	VC0395_A0881	-	hypothetical protein
853	 45.47	0	895493..896143	+	216	147673139	ribA	VC0395_A0882	-	GTP cyclohydrolase II
854	 50.00	0	896278..897585	+	435	147673863	-	VC0395_A0883	-	putative iron-regulated protein A
855	 52.31	+1	897792..899177	+	461	147674942	-	VC0395_A0884	-	hypothetical protein
856	 52.58	+1	899187..900194	+	335	147675735	-	VC0395_A0885	-	putative lipoprotein
857	 53.00	+1	900175..901257	+	360	147675454	-	VC0395_A0886	-	hypothetical protein
858	 48.00	0	901504..903078	+	524	147674156	-	VC0395_A0887	-	hypothetical protein
859	 48.09	0	903224..903772	+	182	147673878	-	VC0395_A0888	-	putative lipoprotein
860	 51.29	0	903836..904492	+	218	147675111	-	VC0395_A0890	-	glyoxylase II family protein
861	 49.09	0	904486..905202	-	238	147674674	-	VC0395_A0889	-	hypothetical protein
862	 51.93	+1	905306..905719	+	137	147673685	-	VC0395_A0891	-	hypothetical protein
863	 48.67	0	905994..907199	+	401	147675043	-	VC0395_A0892	-	extracellular solute-binding protein
864	 46.25	0	907301..907834	+	177	147674036	-	VC0395_A0893	-	hypothetical protein
865	 49.84	0	907844..909127	+	427	147673498	-	VC0395_A0894	-	hypothetical protein
866	 46.90	0	909234..910589	+	451	147675218	-	VC0395_A0895	-	sensor histidine kinase
867	 47.47	0	910570..911220	+	216	147674446	-	VC0395_A0896	-	LuxR family transcriptional regulator
868	 49.79	0	911222..911701	-	159	147673978	-	VC0395_A0897	-	MarR family transcriptional regulator
869	 47.94	0	912058..913680	+	540	147673331	-	VC0395_A0898	-	BCCT family transporter
870	 44.75	0	913846..915141	-	431	147675102	-	VC0395_A0899	-	hypothetical protein
871	 41.18	-1	915384..915689	+	101	147674511	celA	VC0395_A0900	-	PTS system, cellobiose-specific IIB component
872	 45.79	0	915768..917108	+	446	147674956	celB	VC0395_A0901	-	PTS system, cellobiose-specific IIC component
873	 42.86	-1	917155..917490	+	111	147675200	celC	VC0395_A0902	-	PTS system, cellobiose-specific IIA component
874	 46.18	0	917472..918794	+	440	147674231	celF	VC0395_A0903	-	6-phospho-beta-glucosidase
875	 44.53	0	918817..919575	+	252	147673646	-	VC0395_A0904	-	hypothetical protein
876	 49.27	0	919676..920698	+	340	147674834	-	VC0395_A0905	-	LacI family transcription regulator
877	 51.06	0	920845..923010	-	721	147675546	mdoH	VC0395_A0906	-	glucosyltransferase MdoH
878	 48.41	0	923029..924666	-	545	147675383	mdoG	VC0395_A0907	-	glucan biosynthesis protein G
879	 48.84	0	925059..926960	+	633	147673234	-	VC0395_A0908	-	methyl-accepting chemotaxis protein
880	 50.35	0	927092..927802	-	236	147673833	-	VC0395_A0909	-	DNA polymerase III subunit epsilon
881	 47.65	0	927799..929712	-	637	147674424	-	VC0395_A0910	-	hypothetical protein
882	 48.22	0	929993..931228	-	411	147675573	aspC	VC0395_A0911	-	aromatic amino acid aminotransferase
883	 39.25	-2	931389..931574	-	61	147674157	-	VC0395_A0912	-	hypothetical protein
884	 48.41	0	931546..933024	-	492	147674798	-	VC0395_A0913	-	hypothetical protein
885	 49.00	0	933533..934381	+	282	147675443	thiD	VC0395_A0914	-	phosphomethylpyrimidine kinase
886	 48.69	0	934447..935892	-	481	147673141	asnC	VC0395_A0915	-	asparaginyl-tRNA synthetase
887	 46.14	0	935994..937625	-	543	147673794	-	VC0395_A0916	-	methyl-accepting chemotaxis protein
888	 44.44	0	938023..938391	+	122	147674632	-	VC0395_A0917	-	putative 6-pyruvoyl tetrahydrobiopterin synthase
889	 49.63	0	938480..939841	-	453	147675128	sdaA-1	VC0395_A0918	-	L-serine dehydratase 1
890	 47.05	0	939934..941187	-	417	147673147	sdaC-1	VC0395_A0919	-	serine transporter
891	 46.18	0	941486..942100	-	204	147673578	-	VC0395_A0920	-	MutT/nudix family protein
892	 48.87	0	942297..943673	-	458	147674330	pabB	VC0395_A0921	-	para-aminobenzoate synthase, component I
893	 51.12	0	943849..945366	+	505	147673955	-	VC0395_A0922	-	putative fumarate hydratase, class I
894	 39.25	-2	945515..945700	+	61	147674531	-	VC0395_A0923	-	hypothetical protein
895	 51.46	0	945925..947298	+	457	147675160	-	VC0395_A0924	-	hypothetical protein
896	 50.88	0	947295..948314	+	339	147673702	-	VC0395_A0925	-	hypothetical protein
897	 48.83	0	948428..949969	+	513	147674299	tyrR	VC0395_A0926	-	transcriptional regulator TyrR
898	 45.31	0	949969..950544	+	191	147674891	rimJ	VC0395_A0927	-	ribosomal-protein-alanine acetyltransferase
899	 50.84	0	950639..951112	+	157	147675547	-	VC0395_A0928	-	hypothetical protein
900	 50.97	0	951180..952058	-	292	147673345	-	VC0395_A0929	-	hypothetical protein
901	 49.49	0	952179..953465	-	428	147673980	-	VC0395_A0930	-	alanine racemase
902	 48.65	0	953514..955145	-	543	147674508	-	VC0395_A0931	-	methyl-accepting chemotaxis protein
903	 47.34	0	955479..956942	+	487	147674466	-	VC0395_A0932	-	putative transporter
904	 49.78	0	956952..958301	+	449	147675282	-	VC0395_A0933	-	sensor histidine kinase
905	 49.06	0	958270..958746	+	158	147673496	-	VC0395_A0934	-	putative chemotaxis protein CheY
906	 48.86	0	958774..959694	-	306	147674095	-	VC0395_A0935	-	hypothetical protein
907	 46.90	0	959792..960565	-	257	147673427	ompV	VC0395_A0936	-	outer membrane protein OmpV
908	 46.71	0	960778..962100	-	440	147674098	-	VC0395_A0937	-	sensor histidine kinase
909	 47.09	0	962126..962830	-	234	147673787	-	VC0395_A0938	-	DNA-binding response regulator
910	 48.54	0	963206..966277	+	1023	147675631	-	VC0395_A0939	-	hypothetical protein
911	 45.83	0	966358..966573	-	71	147675333	-	VC0395_A0940	-	hypothetical protein
912	 47.00	0	966552..967034	-	160	147673175	-	VC0395_A0941	-	hypothetical protein
913	 50.15	0	967533..968507	+	324	147673180	mglB	VC0395_A0942	-	D-galactose/D-glucose ABC transporter, periplasmic D-galactose/D-glucose-binding protein
914	 39.10	-2	968575..968730	-	51	147674284	-	VC0395_A0943	-	hypothetical protein
915	 46.59	0	968713..970221	+	502	147674566	mglA	VC0395_A0944	-	galactose/methyl galaxtoside transporter ATP-binding protein
916	 47.63	0	970226..971239	+	337	147675406	mglC	VC0395_A0945	-	beta-methylgalactoside transporter inner membrane component
917	 38.03	-2	971649..972287	+	212	147674716	-	VC0395_A0946	-	hypothetical protein
918	 37.56	-2	972608..973435	+	275	147675326	-	VC0395_A0947	-	putative lipoprotein
919	 51.63	0	973586..975115	-	509	147673243	-	VC0395_A0948	-	hypothetical protein
920	 48.19	0	975125..975622	-	165	147674013	-	VC0395_A0949	-	hypothetical protein
921	 52.26	+1	975873..976844	-	323	147673864	-	VC0395_A0950	-	hypothetical protein
922	 50.42	0	977474..978181	+	235	147674607	-	VC0395_A0951	-	GntR family transcriptional regulator
923	 52.51	+1	978192..979088	+	298	147673607	prpB	VC0395_A0952	-	2-methylisocitrate lyase
924	 52.73	+1	979265..980398	+	377	147673201	prpC	VC0395_A0953	-	methylcitrate synthase
925	 54.70	+1	980508..983114	+	868	147674815	acnA	VC0395_A0954	-	aconitate hydratase
926	 54.36	+1	983123..984325	+	400	147674246	-	VC0395_A0955	-	putative AcnD-accessory protein PrpF
927	 53.03	+1	984309..986207	+	632	147675302	prpE	VC0395_A0956	-	propionate--CoA ligase
928	 46.33	0	986381..986857	+	158	147674694	-	VC0395_A0957	-	putative acetyltransferase
929	 48.28	0	986938..988335	+	465	147673762	-	VC0395_A0958	-	MutT/nudix family protein
930	 48.96	0	988401..989507	-	368	147673074	-	VC0395_A0959	-	M20A family peptidase
931	 48.02	0	989932..991041	+	369	147673060	hppD	VC0395_A0960	-	4-hydroxyphenylpyruvate dioxygenase
932	 51.89	+1	991034..992170	+	378	147675063	-	VC0395_A0961	-	putative oxidoreductase
933	 51.96	+1	992177..993196	+	339	147674993	-	VC0395_A0962	-	hypothetical protein
934	 47.99	0	993193..993840	+	215	147675141	maiA	VC0395_A0964	-	maleylacetoacetate isomerase
935	 45.85	0	993822..995147	-	441	147674364	-	VC0395_A0963	-	response regulator
936	 46.55	0	995083..999078	+	1331	147674561	-	VC0395_A0965	-	sensory box sensor histidine kinase/response regulator
937	 46.62	0	999184..999657	-	157	147674520	-	VC0395_A0966	-	putative antioxidant
938	 47.94	0	1000308..1003238	+	976	147673928	-	VC0395_A0967	-	GGDEF family protein
939	 46.30	0	1003280..1004536	-	418	147673309	-	VC0395_A0968	-	hypothetical protein
47.83	MEAN

3.88	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.