version 1.0
Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 765 48.34 0 799830..800402 - 190 147674225 - VC0395_A0790 - proton/glutamate symporter 766 51.55 0 800718..801524 - 268 147673648 trpA VC0395_A0791 - tryptophan synthase subunit alpha 767 50.46 0 801524..802714 - 396 147675541 trpB VC0395_A0792 - tryptophan synthase subunit beta 768 49.86 0 802755..804164 - 469 147674842 trpC/F VC0395_A0793 - bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 769 52.15 +1 804170..805168 - 332 147674592 trpD VC0395_A0794 - anthranilate phosphoribosyltransferase 770 52.78 +1 805189..805800 - 203 147673994 trpG VC0395_A0795 - anthranilate synthase component II 771 51.34 0 805797..807368 - 523 147673289 trpE VC0395_A0796 - anthranilate synthase component I 772 45.05 0 807502..807612 - 36 147675241 - VC0395_A0797 - putative trp operon leader peptide 773 49.60 0 807704..808576 + 290 147674944 - VC0395_A0798 - hypothetical protein 774 50.24 0 808579..809199 + 206 147674311 - VC0395_A0799 - hypothetical protein 775 51.76 +1 809332..810297 + 321 147673214 - VC0395_A0800 - pseudouridine synthase family 1 protein 776 51.86 +1 810465..812186 - 573 147675396 cydC VC0395_A0801 - cysteine/glutathione ABC transporter membrane/ATP-binding component 777 50.62 0 812179..813966 - 595 147675398 cydD VC0395_A0802 - cysteine/glutathione ABC transporter membrane/ATP-binding component 778 50.26 0 814086..815042 - 318 147674572 trxB VC0395_A0803 - thioredoxin reductase 779 48.33 0 815517..816176 + 219 147673493 - VC0395_A0804 - hypothetical protein 780 51.40 0 816151..817401 + 416 147675526 - VC0395_A0805 - aminotransferase, class V 781 48.72 0 817659..818990 + 443 147674355 - VC0395_A0806 - GGDEF family protein 782 48.35 0 819091..819756 - 221 147673100 sanA VC0395_A0807 - sanA protein 783 47.97 0 819828..820196 - 122 147675734 - VC0395_A0808 - hypothetical protein 784 50.37 0 820200..821966 - 588 147674901 sfcA VC0395_A0809 - malate dehydrogenase 785 44.68 0 822282..822704 + 140 147674138 - VC0395_A0810 - hypothetical protein 786 46.88 0 822906..824123 - 405 147673379 - VC0395_A0811 - phosphoribosylaminoimidazole-succinocarboxamide synthase 787 47.37 0 824178..824576 - 132 147675725 - VC0395_A0812 - hypothetical protein 788 40.91 -1 824868..825065 - 65 147675000 - VC0395_A0813 - hypothetical protein 789 46.82 0 825201..826253 - 350 147673824 - VC0395_A0814 - hypothetical protein 790 50.74 0 826318..826989 - 223 147673077 - VC0395_A0815 - putative lipoprotein 791 44.78 0 827089..827778 - 229 147675375 - VC0395_A0816 - hypothetical protein 792 44.40 0 827903..828598 - 231 147674612 - VC0395_A0817 - hypothetical protein 793 48.92 0 828769..831834 + 1021 147675638 - VC0395_A0818 - hypothetical protein 794 48.29 0 831884..832351 + 155 147673539 - VC0395_A0819 - hypothetical protein 795 44.80 0 832601..833812 + 403 147673040 - VC0395_A0820 - putative trypsin 796 47.93 0 833887..834612 - 241 147673785 - VC0395_A0821 - hypothetical protein 797 53.32 +1 834761..836296 - 511 147674751 hutH VC0395_A0822 - histidine ammonia-lyase 798 53.89 +1 836308..838005 - 565 147675330 hutU VC0395_A0823 - urocanate hydratase 799 52.52 +1 838024..839034 - 336 147673474 hutG VC0395_A0824 - formimidoylglutamase 800 53.02 +1 839024..840232 - 402 147674086 hutI VC0395_A0825 - imidazolonepropionase 801 49.93 0 840336..841046 - 236 147673613 hutC VC0395_A0826 - histidine utilization repressor 802 48.63 0 841163..842110 - 315 147674074 - VC0395_A0827 - hypothetical protein 803 49.53 0 842249..842569 - 106 147675297 - VC0395_A0828 - dsDNA-mimic protein 804 44.17 0 842574..843173 - 199 147674461 - VC0395_A0829 - elongation factor P 805 49.81 0 843332..844126 + 264 147673061 - VC0395_A0830 - hypothetical protein 806 45.34 0 844220..846334 + 704 147674946 - VC0395_A0832 - hypothetical protein 807 48.77 0 846306..848669 - 787 147675373 polB VC0395_A0831 - DNA polymerase II 808 47.66 0 849006..849689 + 227 147673828 - VC0395_A0833 - response regulator 809 49.15 0 849689..851521 + 610 147674383 uvrC VC0395_A0834 - excinuclease ABC subunit C 810 47.31 0 851569..852126 + 185 147673568 pgsA VC0395_A0835 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 811 47.54 0 853019..854137 + 372 147674755 - VC0395_A0841 - GGDEF family protein 812 50.62 0 854134..854619 - 161 147675571 - VC0395_A0840 - hypothetical protein 813 45.30 0 854762..854878 + 38 147675174 - VC0395_A0842 - hypothetical protein 814 50.20 0 854910..855893 + 327 147673076 pheS VC0395_A0843 - phenylalanyl-tRNA synthetase subunit alpha 815 52.01 +1 855920..858307 + 795 147673806 pheT VC0395_A0844 - phenylalanyl-tRNA synthetase subunit beta 816 40.00 -2 858590..858724 + 44 147674752 - VC0395_A0845 - hypothetical protein 817 47.14 0 858746..859042 + 98 147673436 ihfA VC0395_A0846 - integration host factor subunit alpha 818 47.82 0 859171..859950 - 259 147674214 - VC0395_A0847 - hypothetical protein 819 36.30 -2 860017..860151 - 44 147675016 - VC0395_A0848 - hypothetical protein 820 49.01 0 860419..861075 + 218 147675652 - VC0395_A0849 - thiopurine S-methyltransferase 821 52.03 +1 861168..862349 - 393 147673455 purT VC0395_A0850 - phosphoribosylglycinamide formyltransferase 2 822 49.43 0 862497..863372 - 291 147674190 - VC0395_A0851 - hypothetical protein 823 50.23 0 863531..864418 - 295 147675337 cdd VC0395_A0852 - cytidine deaminase 824 51.26 0 864588..865262 - 224 147675623 - VC0395_A0853 - hypothetical protein 825 47.44 0 865253..865642 - 129 147675019 - VC0395_A0854 - hypothetical protein 826 50.88 0 865659..867083 - 474 147674379 sbcB VC0395_A0855 - exonuclease I 827 50.42 0 867229..868644 - 471 147673589 - VC0395_A0856 - sodium/dicarboxylate symporter 828 49.44 0 868948..869394 + 148 147675201 - VC0395_A0857 - PilB-related protein 829 41.23 -1 869608..869721 + 37 147674708 - VC0395_A0858 - hypothetical protein 830 52.43 +1 869921..871030 + 369 147673919 cobT VC0395_A0859 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 831 50.00 0 871030..871815 + 261 147674142 cobS VC0395_A0860 - cobalamin synthase 832 52.22 +1 871824..872363 + 179 147673396 cobU VC0395_A0861 - adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase 833 52.24 +1 872370..872972 + 200 147674014 - VC0395_A0862 - putative alpha-ribazole-5`-phosphate phosphatase CobC 834 49.95 0 873288..874316 + 342 147673220 astE VC0395_A0863 - succinylglutamate desuccinylase 835 52.88 +1 874385..875392 + 335 147675213 - VC0395_A0864 - vtamin B12-transporter permease 836 51.06 0 875379..876134 + 251 147674550 - VC0395_A0865 - vitamin B12-transporter ATPase 837 44.62 0 876519..877094 - 191 147674394 - VC0395_A0866 - hypothetical protein 838 42.17 -1 877273..877668 - 131 147673625 - VC0395_A0867 - hypothetical protein 839 50.22 0 877716..879326 - 536 147675614 - VC0395_A0868 - methyl-accepting chemotaxis protein 840 47.17 0 879557..880069 - 170 147674868 - VC0395_A0869 - hypothetical protein 841 46.00 0 880335..881234 - 299 147674372 - VC0395_A0870 - putative lipoprotein 842 48.96 0 881398..882645 + 415 147673608 - VC0395_A0871 - CinA family protein 843 45.49 0 882895..883149 + 84 147675472 - VC0395_A0872 - hypothetical protein 844 45.16 0 883347..883625 - 92 147675378 - VC0395_A0873 - putative iron-sulfur cluster-binding protein 845 46.24 0 883625..884794 - 389 147674333 nrdB VC0395_A0874 - ribonucleotide-diphosphate reductase subunit beta 846 48.82 0 884854..887139 - 761 147674951 nrdA VC0395_A0875 - ribonucleotide-diphosphate reductase subunit alpha 847 48.78 0 887588..888325 - 245 147675156 ubiG VC0395_A0876 - 3-demethylubiquinone-9 3-methyltransferase 848 51.17 0 888677..891361 + 894 147673690 gyrA VC0395_A0877 - DNA gyrase, subunit A 849 49.55 0 891574..892572 + 332 147673988 - VC0395_A0878 - hypothetical protein 850 47.11 0 892599..893498 - 299 147674578 - VC0395_A0879 - AraC/XylS family transcriptional regulator 851 48.64 0 893749..894963 + 404 147673481 - VC0395_A0880 - hypothetical protein 852 46.89 0 895146..895322 + 58 147674094 - VC0395_A0881 - hypothetical protein 853 45.47 0 895493..896143 + 216 147673139 ribA VC0395_A0882 - GTP cyclohydrolase II 854 50.00 0 896278..897585 + 435 147673863 - VC0395_A0883 - putative iron-regulated protein A 855 52.31 +1 897792..899177 + 461 147674942 - VC0395_A0884 - hypothetical protein 856 52.58 +1 899187..900194 + 335 147675735 - VC0395_A0885 - putative lipoprotein 857 53.00 +1 900175..901257 + 360 147675454 - VC0395_A0886 - hypothetical protein 858 48.00 0 901504..903078 + 524 147674156 - VC0395_A0887 - hypothetical protein 859 48.09 0 903224..903772 + 182 147673878 - VC0395_A0888 - putative lipoprotein 860 51.29 0 903836..904492 + 218 147675111 - VC0395_A0890 - glyoxylase II family protein 861 49.09 0 904486..905202 - 238 147674674 - VC0395_A0889 - hypothetical protein 862 51.93 +1 905306..905719 + 137 147673685 - VC0395_A0891 - hypothetical protein 863 48.67 0 905994..907199 + 401 147675043 - VC0395_A0892 - extracellular solute-binding protein 864 46.25 0 907301..907834 + 177 147674036 - VC0395_A0893 - hypothetical protein 47.83 MEAN 3.88 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.