IslandPath Analysis: Vibrio cholerae O395



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.83   STD DEV: 3.88
Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
742	 45.33	0	788110..788409	-	99	147673065	-	VC0395_A0767	-	hypothetical protein
743	 48.92	0	788409..788639	-	76	147674186	-	VC0395_A0768	-	hypothetical protein
744	 54.94	+1	788636..789232	-	198	147673971	-	VC0395_A0769	-	hypothetical protein
745	 50.86	0	789208..789498	-	96	147675474	-	VC0395_A0770	-	hypothetical protein
746	 53.01	+1	789498..790046	-	182	147675152	-	VC0395_A0771	-	hypothetical protein
747	 45.80	0	790131..790547	-	138	147673198	-	VC0395_A0772	-	positive regulator of late transcription
748	 40.96	-1	790626..790874	-	82	147674987	-	VC0395_A0773	-	hypothetical protein
749	 48.19	0	790861..791439	-	192	147675749	-	VC0395_A0774	-	protein gp16
750	 52.99	+1	791653..791886	-	77	147673400	-	VC0395_A0775	-	hypothetical protein
751	 55.74	+2	791966..792496	-	176	147674194	-	VC0395_A0776	-	hypothetical protein
752	 44.80	0	792493..792963	-	156	147673916	-	VC0395_A0777	-	hypothetical protein
753	 53.03	+1	792960..793157	-	65	147673871	-	VC0395_A0778	-	hypothetical protein
754	 47.33	0	793141..793383	-	80	147673101	-	VC0395_A0779	-	hypothetical protein
755	 52.38	+1	793376..793648	-	90	147673598	-	VC0395_A0780	-	hypothetical protein
756	 51.22	0	793658..794272	-	204	147674863	-	VC0395_A0781	-	hypothetical protein
757	 45.13	0	794259..794453	-	64	147674083	-	VC0395_A0782	-	hypothetical protein
758	 49.18	0	794428..794793	-	121	147673326	-	VC0395_A0783	-	hypothetical protein
759	 47.17	0	794803..795243	-	146	147675301	-	VC0395_A0784	-	hypothetical protein
760	 49.78	0	795253..795477	-	74	147673940	-	VC0395_A0785	-	hypothetical protein
761	 54.60	+1	795485..796429	-	314	147673212	-	VC0395_A0786	-	DNA transposition protein
762	 52.74	+1	796456..798459	-	667	147675169	-	VC0395_A0787	-	transposase
763	 46.22	0	798471..798695	-	74	147674276	-	VC0395_A0788	-	hypothetical protein
764	 45.66	0	798848..799585	+	245	147673724	-	VC0395_A0789	-	prophage MuSo2, Cro/CI family transcriptional regulator
765	 48.34	0	799830..800402	-	190	147674225	-	VC0395_A0790	-	proton/glutamate symporter
766	 51.55	0	800718..801524	-	268	147673648	trpA	VC0395_A0791	-	tryptophan synthase subunit alpha
767	 50.46	0	801524..802714	-	396	147675541	trpB	VC0395_A0792	-	tryptophan synthase subunit beta
768	 49.86	0	802755..804164	-	469	147674842	trpC/F	VC0395_A0793	-	bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase
769	 52.15	+1	804170..805168	-	332	147674592	trpD	VC0395_A0794	-	anthranilate phosphoribosyltransferase
770	 52.78	+1	805189..805800	-	203	147673994	trpG	VC0395_A0795	-	anthranilate synthase component II
771	 51.34	0	805797..807368	-	523	147673289	trpE	VC0395_A0796	-	anthranilate synthase component I
772	 45.05	0	807502..807612	-	36	147675241	-	VC0395_A0797	-	putative trp operon leader peptide
773	 49.60	0	807704..808576	+	290	147674944	-	VC0395_A0798	-	hypothetical protein
774	 50.24	0	808579..809199	+	206	147674311	-	VC0395_A0799	-	hypothetical protein
775	 51.76	+1	809332..810297	+	321	147673214	-	VC0395_A0800	-	pseudouridine synthase family 1 protein
776	 51.86	+1	810465..812186	-	573	147675396	cydC	VC0395_A0801	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
777	 50.62	0	812179..813966	-	595	147675398	cydD	VC0395_A0802	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
778	 50.26	0	814086..815042	-	318	147674572	trxB	VC0395_A0803	-	thioredoxin reductase
779	 48.33	0	815517..816176	+	219	147673493	-	VC0395_A0804	-	hypothetical protein
780	 51.40	0	816151..817401	+	416	147675526	-	VC0395_A0805	-	aminotransferase, class V
781	 48.72	0	817659..818990	+	443	147674355	-	VC0395_A0806	-	GGDEF family protein
782	 48.35	0	819091..819756	-	221	147673100	sanA	VC0395_A0807	-	sanA protein
783	 47.97	0	819828..820196	-	122	147675734	-	VC0395_A0808	-	hypothetical protein
784	 50.37	0	820200..821966	-	588	147674901	sfcA	VC0395_A0809	-	malate dehydrogenase
785	 44.68	0	822282..822704	+	140	147674138	-	VC0395_A0810	-	hypothetical protein
786	 46.88	0	822906..824123	-	405	147673379	-	VC0395_A0811	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
787	 47.37	0	824178..824576	-	132	147675725	-	VC0395_A0812	-	hypothetical protein
788	 40.91	-1	824868..825065	-	65	147675000	-	VC0395_A0813	-	hypothetical protein
789	 46.82	0	825201..826253	-	350	147673824	-	VC0395_A0814	-	hypothetical protein
790	 50.74	0	826318..826989	-	223	147673077	-	VC0395_A0815	-	putative lipoprotein
791	 44.78	0	827089..827778	-	229	147675375	-	VC0395_A0816	-	hypothetical protein
792	 44.40	0	827903..828598	-	231	147674612	-	VC0395_A0817	-	hypothetical protein
793	 48.92	0	828769..831834	+	1021	147675638	-	VC0395_A0818	-	hypothetical protein
794	 48.29	0	831884..832351	+	155	147673539	-	VC0395_A0819	-	hypothetical protein
795	 44.80	0	832601..833812	+	403	147673040	-	VC0395_A0820	-	putative trypsin
796	 47.93	0	833887..834612	-	241	147673785	-	VC0395_A0821	-	hypothetical protein
797	 53.32	+1	834761..836296	-	511	147674751	hutH	VC0395_A0822	-	histidine ammonia-lyase
798	 53.89	+1	836308..838005	-	565	147675330	hutU	VC0395_A0823	-	urocanate hydratase
799	 52.52	+1	838024..839034	-	336	147673474	hutG	VC0395_A0824	-	formimidoylglutamase
800	 53.02	+1	839024..840232	-	402	147674086	hutI	VC0395_A0825	-	imidazolonepropionase
801	 49.93	0	840336..841046	-	236	147673613	hutC	VC0395_A0826	-	histidine utilization repressor
802	 48.63	0	841163..842110	-	315	147674074	-	VC0395_A0827	-	hypothetical protein
803	 49.53	0	842249..842569	-	106	147675297	-	VC0395_A0828	-	dsDNA-mimic protein
804	 44.17	0	842574..843173	-	199	147674461	-	VC0395_A0829	-	elongation factor P
805	 49.81	0	843332..844126	+	264	147673061	-	VC0395_A0830	-	hypothetical protein
806	 45.34	0	844220..846334	+	704	147674946	-	VC0395_A0832	-	hypothetical protein
807	 48.77	0	846306..848669	-	787	147675373	polB	VC0395_A0831	-	DNA polymerase II
808	 47.66	0	849006..849689	+	227	147673828	-	VC0395_A0833	-	response regulator
809	 49.15	0	849689..851521	+	610	147674383	uvrC	VC0395_A0834	-	excinuclease ABC subunit C
810	 47.31	0	851569..852126	+	185	147673568	pgsA	VC0395_A0835	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
811	 47.54	0	853019..854137	+	372	147674755	-	VC0395_A0841	-	GGDEF family protein
812	 50.62	0	854134..854619	-	161	147675571	-	VC0395_A0840	-	hypothetical protein
813	 45.30	0	854762..854878	+	38	147675174	-	VC0395_A0842	-	hypothetical protein
814	 50.20	0	854910..855893	+	327	147673076	pheS	VC0395_A0843	-	phenylalanyl-tRNA synthetase subunit alpha
815	 52.01	+1	855920..858307	+	795	147673806	pheT	VC0395_A0844	-	phenylalanyl-tRNA synthetase subunit beta
816	 40.00	-2	858590..858724	+	44	147674752	-	VC0395_A0845	-	hypothetical protein
817	 47.14	0	858746..859042	+	98	147673436	ihfA	VC0395_A0846	-	integration host factor subunit alpha
818	 47.82	0	859171..859950	-	259	147674214	-	VC0395_A0847	-	hypothetical protein
819	 36.30	-2	860017..860151	-	44	147675016	-	VC0395_A0848	-	hypothetical protein
820	 49.01	0	860419..861075	+	218	147675652	-	VC0395_A0849	-	thiopurine S-methyltransferase
821	 52.03	+1	861168..862349	-	393	147673455	purT	VC0395_A0850	-	phosphoribosylglycinamide formyltransferase 2
822	 49.43	0	862497..863372	-	291	147674190	-	VC0395_A0851	-	hypothetical protein
823	 50.23	0	863531..864418	-	295	147675337	cdd	VC0395_A0852	-	cytidine deaminase
824	 51.26	0	864588..865262	-	224	147675623	-	VC0395_A0853	-	hypothetical protein
825	 47.44	0	865253..865642	-	129	147675019	-	VC0395_A0854	-	hypothetical protein
826	 50.88	0	865659..867083	-	474	147674379	sbcB	VC0395_A0855	-	exonuclease I
827	 50.42	0	867229..868644	-	471	147673589	-	VC0395_A0856	-	sodium/dicarboxylate symporter
828	 49.44	0	868948..869394	+	148	147675201	-	VC0395_A0857	-	PilB-related protein
829	 41.23	-1	869608..869721	+	37	147674708	-	VC0395_A0858	-	hypothetical protein
830	 52.43	+1	869921..871030	+	369	147673919	cobT	VC0395_A0859	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
831	 50.00	0	871030..871815	+	261	147674142	cobS	VC0395_A0860	-	cobalamin synthase
832	 52.22	+1	871824..872363	+	179	147673396	cobU	VC0395_A0861	-	adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
833	 52.24	+1	872370..872972	+	200	147674014	-	VC0395_A0862	-	putative alpha-ribazole-5`-phosphate phosphatase CobC
834	 49.95	0	873288..874316	+	342	147673220	astE	VC0395_A0863	-	succinylglutamate desuccinylase
835	 52.88	+1	874385..875392	+	335	147675213	-	VC0395_A0864	-	vtamin B12-transporter permease
836	 51.06	0	875379..876134	+	251	147674550	-	VC0395_A0865	-	vitamin B12-transporter ATPase
837	 44.62	0	876519..877094	-	191	147674394	-	VC0395_A0866	-	hypothetical protein
838	 42.17	-1	877273..877668	-	131	147673625	-	VC0395_A0867	-	hypothetical protein
839	 50.22	0	877716..879326	-	536	147675614	-	VC0395_A0868	-	methyl-accepting chemotaxis protein
840	 47.17	0	879557..880069	-	170	147674868	-	VC0395_A0869	-	hypothetical protein
841	 46.00	0	880335..881234	-	299	147674372	-	VC0395_A0870	-	putative lipoprotein
47.83	MEAN

3.88	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.