version 1.0
Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 516 49.78 0 580984..582351 + 455 147673171 luxO VC0395_A0541 - LuxO repressor protein 517 46.49 0 582355..582696 + 113 147674934 luxU VC0395_A0543 - phosphorelay protein 518 51.18 0 582685..583575 - 296 147675316 - VC0395_A0542 - hypothetical protein 519 47.76 0 583866..584870 + 334 147674357 moaA VC0395_A0544 - molybdenum cofactor biosynthesis protein A 520 49.71 0 584930..585442 + 170 147673390 moaB VC0395_A0545 - molybdenum cofactor biosynthesis protein B 521 51.55 0 585450..585932 + 160 147675618 moaC VC0395_A0546 - molybdenum cofactor biosynthesis protein C 522 50.41 0 585929..586174 + 81 147674797 moaD VC0395_A0547 - molybdopterin synthase small subunit 523 52.10 +1 586176..586628 + 150 147675319 moaE VC0395_A0548 - molybdenum cofactor biosynthesis protein E 524 47.69 0 586643..587617 - 324 147673523 - VC0395_A0549 - GGDEF family protein 525 48.30 0 587822..588262 + 146 147674350 - VC0395_A0550 - CBS domain-containing protein 526 53.62 +1 588375..590681 + 768 147675004 zntA VC0395_A0551 - zinc/cadmium/mercury/lead-transporting ATPase 527 52.51 +1 591127..591903 + 258 147674560 udp-1 VC0395_A0552 - uridine phosphorylase 528 46.42 0 591976..592869 - 297 147675163 - VC0395_A0553 - hypothetical protein 529 48.68 0 593095..595290 - 731 147673338 metG VC0395_A0554 - methionyl-tRNA synthetase 530 51.44 0 595232..596380 + 382 147674192 mrp VC0395_A0555 - mrp protein 531 48.18 0 596530..597189 + 219 147674003 udk VC0395_A0556 - uridine kinase 532 48.20 0 597287..599398 + 703 147674400 asmA VC0395_A0557 - asmA protein 533 49.34 0 599470..600075 - 201 147673401 cobA VC0395_A0558 - cob(I)yrinic acid a,c-diamide adenosyltransferase 534 49.15 0 600161..600628 + 155 147674630 - VC0395_A0559 - phosphotyrosine protein phosphatase 535 48.27 0 600655..601953 - 432 147675389 fadL-1 VC0395_A0560 - long-chain fatty acid transport protein 536 45.84 0 602256..603542 - 428 147673128 fadL-2 VC0395_A0561 - long-chain fatty acid transport protein 537 47.13 0 603802..604533 - 243 147673825 - VC0395_A0562 - hypothetical protein 538 45.68 0 604526..605092 - 188 147674954 - VC0395_A0563 - RNA polymerase sigma factor 539 48.87 0 605473..606927 + 484 147675487 fadI VC0395_A0564 - 3-ketoacyl-CoA thiolase 540 49.65 0 606927..609053 + 708 147673662 fadJ VC0395_A0565 - multifunctional fatty acid oxidation complex subunit alpha 541 50.46 0 609180..609728 + 182 147674582 - VC0395_A0566 - hypothetical protein 542 46.67 0 609805..610704 - 299 147674833 - VC0395_A0567 - LysR family transcriptional regulator 543 45.62 0 610913..612019 + 368 147674250 - VC0395_A0568 - response regulator 544 45.45 0 612189..612320 + 43 147674867 - VC0395_A0569 - hypothetical protein 545 45.36 0 612320..612718 + 132 147673072 - VC0395_A0570 - hypothetical protein 546 48.53 0 612850..613395 + 181 147673655 apt VC0395_A0571 - adenine phosphoribosyltransferase 547 51.71 +1 613414..615492 + 692 147674747 dnaZX VC0395_A0572 - DNA polymerase III subunits gamma and tau 548 47.93 0 615530..615892 + 120 147675358 - VC0395_A0573 - hypothetical protein 549 52.24 +1 615907..616509 + 200 147673522 recR VC0395_A0574 - recombination protein RecR 550 50.79 0 616619..616870 - 83 147674270 - VC0395_A0575 - hypothetical protein 551 47.03 0 617005..617442 + 145 147674670 - VC0395_A0576 - hypothetical protein 552 48.39 0 617536..618279 - 247 147675485 - VC0395_A0577 - short chain dehydrogenase 553 49.02 0 618429..619499 + 356 147674533 - VC0395_A0578 - putative periplasmic protease 554 50.00 0 619624..620691 - 355 147675334 - VC0395_A0579 - cysteine synthase/cystathionine beta-synthase family protein 555 44.51 0 620735..621271 + 178 147675157 - VC0395_A0580 - AsnC family transcriptional regulator 556 48.66 0 621280..622140 - 286 147673197 tesB VC0395_A0581 - acyl-CoA thioesterase II 557 45.83 0 622291..622722 + 143 147674297 - VC0395_A0582 - putative lipoprotein 558 48.84 0 622776..623078 - 100 147674894 - VC0395_A0583 - MGMT family protein 559 48.92 0 623129..623872 + 247 147674789 - VC0395_A0584 - hypothetical protein 560 45.20 0 623959..626040 + 693 147673342 - VC0395_A0585 - hypothetical protein 561 50.58 0 626582..626923 + 113 147673929 - VC0395_A0586 - ArsR family transcriptional regulator 562 48.40 0 627020..628021 + 333 147674514 gap VC0395_A0587 - glyceraldehyde-3-phosphate dehydrogenase 563 54.02 +1 628035..628532 + 165 147675100 - VC0395_A0588 - putative phosphatase 564 50.65 0 628571..629806 + 411 147675684 - VC0395_A0589 - putative transporter 565 31.94 -2 629925..630068 + 47 147673080 - VC0395_A0590 - hypothetical protein 566 50.49 0 630421..631341 + 306 147675425 - VC0395_A0591 - putative chitinase 567 51.47 0 631354..633636 + 760 147674641 - VC0395_A0592 - putative chitinase 568 50.18 0 633726..634556 - 276 147674172 - VC0395_A0593 - hypothetical protein 569 50.64 0 634840..635382 + 180 147673672 - VC0395_A0594 - hypothetical protein 570 47.66 0 635395..636183 + 262 147675685 - VC0395_A0595 - AraC/XylS family transcriptional regulator 571 45.40 0 636232..636720 - 162 147673819 - VC0395_A0596 - hypothetical protein 572 41.84 -1 636799..636939 - 46 147673107 - VC0395_A0597 - hypothetical protein 573 54.14 +1 636984..637973 - 329 147673908 - VC0395_A0598 - hypothetical protein 574 47.54 0 638219..638584 + 121 147673325 - VC0395_A0599 - hypothetical protein 575 46.37 0 638581..639723 + 380 147675285 - VC0395_A0600 - response regulator 576 47.54 0 639758..640123 + 121 147674579 - VC0395_A0601 - response regulator 577 44.27 0 640120..640704 + 194 147673821 - VC0395_A0602 - hypothetical protein 578 45.00 0 640715..642034 + 439 147673721 - VC0395_A0603 - sensory box sensor histidine kinase 579 46.59 0 642046..643350 + 434 147675202 - VC0395_A0604 - sensor histidine kinase 580 44.69 0 643350..644960 + 536 147674873 - VC0395_A0605 - response regulator 581 45.91 0 644977..646320 + 447 147674084 - VC0395_A0606 - response regulator 582 45.68 0 646357..647976 - 539 147673989 - VC0395_A0607 - sensor histidine kinase 583 46.86 0 647980..648792 - 270 147674170 - VC0395_A0608 - hypothetical protein 584 46.20 0 649416..651047 + 543 147673391 oppA VC0395_A0609 - oligopeptide ABC transporter, periplasmic oligopeptide-binding protein 585 46.47 0 651196..652116 + 306 147675147 oppB VC0395_A0610 - oligopeptide transporter permease 586 49.72 0 652130..653032 + 300 147674611 oppC VC0395_A0611 - oligopeptide ABC transporter, permease protein 587 50.15 0 653057..654031 + 324 147674302 oppD VC0395_A0612 - oligopeptide transporter ATP-binding component 588 48.27 0 654010..655020 + 336 147673695 oppF VC0395_A0613 - oligopeptide ABC transporter, ATP-binding protein 589 47.15 0 655170..656117 + 315 147673283 - VC0395_A0614 - hypothetical protein 590 51.79 +1 656215..658359 - 714 147675254 pta VC0395_A0615 - phosphate acetyltransferase 591 50.54 0 658495..659691 - 398 147674893 ackA-1 VC0395_A0616 - acetate kinase 592 49.89 0 660038..660496 + 152 147673932 - VC0395_A0617 - hypothetical protein 593 44.53 0 660619..661029 - 136 147674652 - VC0395_A0618 - hypothetical protein 594 48.55 0 661467..662432 + 321 147674912 - VC0395_A0619 - hypothetical protein 595 50.41 0 662508..663491 + 327 147674765 - VC0395_A0620 - putative ABC transporter, permease protein 596 50.95 0 663488..664225 + 245 147675581 - VC0395_A0621 - ABC transporter, ATP-binding protein 597 44.76 0 664438..665907 + 489 147673586 - VC0395_A0622 - GGDEF family protein 598 51.27 0 665940..666413 - 157 147674229 - VC0395_A0623 - hypothetical protein 599 50.94 0 666435..666911 - 158 147674360 - VC0395_A0624 - tRNA-dihydrouridine synthase C 600 50.16 0 667068..667697 + 209 147674463 - VC0395_A0625 - SecA, C-motif-containing protein 601 47.74 0 667793..668389 + 198 147675332 lolA VC0395_A0626 - outer-membrane lipoprotein carrier protein 602 52.15 +1 668414..669763 + 449 147673167 - VC0395_A0627 - recombination factor protein RarA 603 49.85 0 669867..671174 + 435 147674801 serS VC0395_A0628 - seryl-tRNA synthetase 604 50.58 0 671282..672568 - 428 147674377 bioA VC0395_A0629 - adenosylmethionine--8-amino-7-oxononanoate transaminase 605 51.09 0 672695..673747 + 350 147673516 bioB VC0395_A0630 - biotin synthase 606 52.55 +1 673731..674885 + 384 147675336 bioF VC0395_A0631 - 8-amino-7-oxononanoate synthase 607 50.59 0 674747..675685 + 312 147673959 bioC VC0395_A0632 - biotin synthesis protein BioC 608 47.98 0 675661..676377 + 238 147675610 bioD VC0395_A0633 - dithiobiotin synthetase 609 43.33 -1 676459..676668 - 69 147675640 - VC0395_A0634 - hypothetical protein 610 49.42 0 676895..677758 + 287 147675037 htpX VC0395_A0635 - heat shock protein HtpX 611 45.45 0 677968..678396 + 142 147673637 - VC0395_A0636 - putative transcriptional regulator 612 51.10 0 678393..679118 + 241 147675476 - VC0395_A0637 - short chain dehydrogenase 613 48.71 0 679129..680409 + 426 147674241 - VC0395_A0638 - hypothetical protein 614 48.27 0 680409..681218 + 269 147673715 - VC0395_A0639 - hypothetical protein 615 47.27 0 681151..682449 + 432 147674745 cfa VC0395_A0640 - cyclopropane-fatty-acyl-phospholipid synthase 47.83 MEAN 3.88 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0