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Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 472 48.89 0 531081..531530 - 149 147674677 - VC0395_A0496 - hypothetical protein 473 45.49 0 531538..532458 - 306 147675435 - VC0395_A0497 - hypothetical protein 474 45.60 0 532889..533809 - 306 147675769 - VC0395_A0498 - hypothetical protein 475 36.75 -2 533981..534097 - 38 147673595 - VC0395_A0499 - hypothetical protein 476 48.07 0 534172..534999 - 275 147673313 - VC0395_A0500 - short chain dehydrogenase 477 48.63 0 535042..535956 - 304 147674184 rcp VC0395_A0501 - rcp protein 478 48.25 0 536350..536919 + 189 147674558 - VC0395_A0502 - phosphodiesterase 479 49.66 0 537000..537293 - 97 147675101 - VC0395_A0503 - hypothetical protein 480 42.72 -1 537334..537855 - 173 147673605 toxS VC0395_A0504 - regulatory protein ToxS 481 45.08 0 537865..538749 - 294 147674563 toxR VC0395_A0505 - cholera toxin transcriptional activator 482 45.75 0 538977..540884 + 635 147674825 htpG VC0395_A0506 - heat shock protein 90 483 46.98 0 541219..541863 + 214 147673458 adk VC0395_A0507 - adenylate kinase 484 47.59 0 541978..542952 + 324 147674210 hemH VC0395_A0508 - ferrochelatase 485 46.21 0 543050..544594 - 514 147675039 tppB VC0395_A0509 - putative tripeptide transporter permease 486 33.33 -2 544755..544877 + 40 147674992 - VC0395_A0510 - hypothetical protein 487 45.38 0 545039..545536 + 165 147675715 rfaH VC0395_A0511 - transcriptional activator RfaH 488 46.43 0 545697..547361 - 554 147673054 asnB VC0395_A0512 - asparagine synthetase B 489 47.51 0 547557..549143 - 528 147673979 - VC0395_A0513 - putative glutathione-regulated potassium-efflux system protein KefB 490 46.91 0 549238..550452 - 404 147673497 nagC VC0395_A0514 - N-acetylglucosamine repressor 491 45.82 0 550455..551591 - 378 147674117 nagA VC0395_A0515 - N-acetylglucosamine-6-phosphate deacetylase 492 49.05 0 552060..553631 + 523 147675085 nagE VC0395_A0516 - PTS system, N-acetylglucosamine-specific IIABC component 493 46.50 0 553879..555549 + 556 147674963 glnS VC0395_A0517 - glutaminyl-tRNA synthetase 494 49.51 0 555714..560579 + 1621 147673505 - VC0395_A0519 - hypothetical protein 495 44.79 0 555830..555925 - 31 147674165 - VC0395_A0518 - hypothetical protein 496 50.82 0 560701..561495 + 264 147674772 truA VC0395_A0520 - tRNA pseudouridine synthase A 497 50.27 0 561669..562595 + 308 147674043 accD VC0395_A0521 - acetyl-CoA carboxylase subunit beta 498 50.95 0 562640..563905 + 421 147673270 folC VC0395_A0522 - folylpolyglutamate synthase/dihydrofolate synthase 499 47.24 0 563906..564502 + 198 147675233 dedD VC0395_A0523 - dedD protein 500 46.75 0 564565..565056 + 163 147673757 - VC0395_A0524 - bacteriocin production protein 501 48.51 0 565089..566603 + 504 147673131 purF VC0395_A0525 - amidophosphoribosyltransferase 502 51.36 0 566730..568055 - 441 147673585 - VC0395_A0526 - hypothetical protein 503 46.99 0 568156..568887 - 243 147675730 rnt VC0395_A0527 - ribonuclease T 504 43.06 -1 568900..569043 - 47 147674575 - VC0395_A0528 - hypothetical protein 505 47.91 0 569104..569988 + 294 147674163 motY VC0395_A0529 - sodium-type flagellar protein MotY 506 48.30 0 570037..570477 - 146 147675139 - VC0395_A0530 - hypothetical protein 507 48.20 0 570637..571053 - 138 147674604 gloA VC0395_A0531 - lactoylglutathione lyase 508 47.04 0 571094..571735 - 213 147674958 nth VC0395_A0532 - endonuclease III 509 51.23 0 571762..572454 - 230 147673085 - VC0395_A0533 - SoxR-reducing system protein RsxE 510 49.37 0 572456..573085 - 209 147675771 - VC0395_A0534 - electron transport complex protein RnfG 511 53.49 +1 573097..574143 - 348 147674988 rnfD VC0395_A0535 - electron transport complex protein RnfD 512 52.93 +1 574143..576464 - 773 147674223 - VC0395_A0536 - electron transport complex protein RnfC 513 52.21 +1 576473..577060 - 195 147674952 - VC0395_A0537 - electron transport complex protein RnfB 514 47.35 0 577060..577701 - 213 147674720 - VC0395_A0538 - Na(+)-translocating NADH-quinone reductase subunit E 515 48.10 0 578523..580553 + 676 147673403 uvrB VC0395_A0540 - excinuclease ABC subunit B 516 49.78 0 580984..582351 + 455 147673171 luxO VC0395_A0541 - LuxO repressor protein 517 46.49 0 582355..582696 + 113 147674934 luxU VC0395_A0543 - phosphorelay protein 518 51.18 0 582685..583575 - 296 147675316 - VC0395_A0542 - hypothetical protein 519 47.76 0 583866..584870 + 334 147674357 moaA VC0395_A0544 - molybdenum cofactor biosynthesis protein A 520 49.71 0 584930..585442 + 170 147673390 moaB VC0395_A0545 - molybdenum cofactor biosynthesis protein B 521 51.55 0 585450..585932 + 160 147675618 moaC VC0395_A0546 - molybdenum cofactor biosynthesis protein C 522 50.41 0 585929..586174 + 81 147674797 moaD VC0395_A0547 - molybdopterin synthase small subunit 523 52.10 +1 586176..586628 + 150 147675319 moaE VC0395_A0548 - molybdenum cofactor biosynthesis protein E 524 47.69 0 586643..587617 - 324 147673523 - VC0395_A0549 - GGDEF family protein 525 48.30 0 587822..588262 + 146 147674350 - VC0395_A0550 - CBS domain-containing protein 526 53.62 +1 588375..590681 + 768 147675004 zntA VC0395_A0551 - zinc/cadmium/mercury/lead-transporting ATPase 527 52.51 +1 591127..591903 + 258 147674560 udp-1 VC0395_A0552 - uridine phosphorylase 528 46.42 0 591976..592869 - 297 147675163 - VC0395_A0553 - hypothetical protein 529 48.68 0 593095..595290 - 731 147673338 metG VC0395_A0554 - methionyl-tRNA synthetase 530 51.44 0 595232..596380 + 382 147674192 mrp VC0395_A0555 - mrp protein 531 48.18 0 596530..597189 + 219 147674003 udk VC0395_A0556 - uridine kinase 532 48.20 0 597287..599398 + 703 147674400 asmA VC0395_A0557 - asmA protein 533 49.34 0 599470..600075 - 201 147673401 cobA VC0395_A0558 - cob(I)yrinic acid a,c-diamide adenosyltransferase 534 49.15 0 600161..600628 + 155 147674630 - VC0395_A0559 - phosphotyrosine protein phosphatase 535 48.27 0 600655..601953 - 432 147675389 fadL-1 VC0395_A0560 - long-chain fatty acid transport protein 536 45.84 0 602256..603542 - 428 147673128 fadL-2 VC0395_A0561 - long-chain fatty acid transport protein 537 47.13 0 603802..604533 - 243 147673825 - VC0395_A0562 - hypothetical protein 538 45.68 0 604526..605092 - 188 147674954 - VC0395_A0563 - RNA polymerase sigma factor 539 48.87 0 605473..606927 + 484 147675487 fadI VC0395_A0564 - 3-ketoacyl-CoA thiolase 540 49.65 0 606927..609053 + 708 147673662 fadJ VC0395_A0565 - multifunctional fatty acid oxidation complex subunit alpha 541 50.46 0 609180..609728 + 182 147674582 - VC0395_A0566 - hypothetical protein 542 46.67 0 609805..610704 - 299 147674833 - VC0395_A0567 - LysR family transcriptional regulator 543 45.62 0 610913..612019 + 368 147674250 - VC0395_A0568 - response regulator 544 45.45 0 612189..612320 + 43 147674867 - VC0395_A0569 - hypothetical protein 545 45.36 0 612320..612718 + 132 147673072 - VC0395_A0570 - hypothetical protein 546 48.53 0 612850..613395 + 181 147673655 apt VC0395_A0571 - adenine phosphoribosyltransferase 547 51.71 +1 613414..615492 + 692 147674747 dnaZX VC0395_A0572 - DNA polymerase III subunits gamma and tau 548 47.93 0 615530..615892 + 120 147675358 - VC0395_A0573 - hypothetical protein 549 52.24 +1 615907..616509 + 200 147673522 recR VC0395_A0574 - recombination protein RecR 550 50.79 0 616619..616870 - 83 147674270 - VC0395_A0575 - hypothetical protein 551 47.03 0 617005..617442 + 145 147674670 - VC0395_A0576 - hypothetical protein 552 48.39 0 617536..618279 - 247 147675485 - VC0395_A0577 - short chain dehydrogenase 553 49.02 0 618429..619499 + 356 147674533 - VC0395_A0578 - putative periplasmic protease 554 50.00 0 619624..620691 - 355 147675334 - VC0395_A0579 - cysteine synthase/cystathionine beta-synthase family protein 555 44.51 0 620735..621271 + 178 147675157 - VC0395_A0580 - AsnC family transcriptional regulator 556 48.66 0 621280..622140 - 286 147673197 tesB VC0395_A0581 - acyl-CoA thioesterase II 557 45.83 0 622291..622722 + 143 147674297 - VC0395_A0582 - putative lipoprotein 558 48.84 0 622776..623078 - 100 147674894 - VC0395_A0583 - MGMT family protein 559 48.92 0 623129..623872 + 247 147674789 - VC0395_A0584 - hypothetical protein 560 45.20 0 623959..626040 + 693 147673342 - VC0395_A0585 - hypothetical protein 561 50.58 0 626582..626923 + 113 147673929 - VC0395_A0586 - ArsR family transcriptional regulator 562 48.40 0 627020..628021 + 333 147674514 gap VC0395_A0587 - glyceraldehyde-3-phosphate dehydrogenase 563 54.02 +1 628035..628532 + 165 147675100 - VC0395_A0588 - putative phosphatase 564 50.65 0 628571..629806 + 411 147675684 - VC0395_A0589 - putative transporter 565 31.94 -2 629925..630068 + 47 147673080 - VC0395_A0590 - hypothetical protein 566 50.49 0 630421..631341 + 306 147675425 - VC0395_A0591 - putative chitinase 567 51.47 0 631354..633636 + 760 147674641 - VC0395_A0592 - putative chitinase 568 50.18 0 633726..634556 - 276 147674172 - VC0395_A0593 - hypothetical protein 569 50.64 0 634840..635382 + 180 147673672 - VC0395_A0594 - hypothetical protein 570 47.66 0 635395..636183 + 262 147675685 - VC0395_A0595 - AraC/XylS family transcriptional regulator 571 45.40 0 636232..636720 - 162 147673819 - VC0395_A0596 - hypothetical protein 47.83 MEAN 3.88 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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