IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O395



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.83 STD DEV: 3.88
Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
465	 46.13	0	522894..523862	-	322	147673306	cysK	VC0395_A0489	-	cysteine synthase A
466	 47.28	0	523985..524737	-	250	147673993	cysZ	VC0395_A0490	-	putative sulfate transport protein CysZ
467	 47.95	0	524967..525842	+	291	147673252	zipA	VC0395_A0491	-	cell division protein ZipA
468	 48.06	0	525975..527984	+	669	147675693	ligA	VC0395_A0492	-	NAD-dependent DNA ligase LigA
469	 45.05	0	528616..529665	+	349	147674775	-	VC0395_A0493	-	putative porin
470	 39.58	-2	529742..530557	+	271	147673133	-	VC0395_A0494	-	putative lipoprotein
471	 49.05	0	530618..531037	+	139	147673719	-	VC0395_A0495	-	MerR family transcriptional regulator
472	 48.89	0	531081..531530	-	149	147674677	-	VC0395_A0496	-	hypothetical protein
473	 45.49	0	531538..532458	-	306	147675435	-	VC0395_A0497	-	hypothetical protein
474	 45.60	0	532889..533809	-	306	147675769	-	VC0395_A0498	-	hypothetical protein
475	 36.75	-2	533981..534097	-	38	147673595	-	VC0395_A0499	-	hypothetical protein
476	 48.07	0	534172..534999	-	275	147673313	-	VC0395_A0500	-	short chain dehydrogenase
477	 48.63	0	535042..535956	-	304	147674184	rcp	VC0395_A0501	-	rcp protein
478	 48.25	0	536350..536919	+	189	147674558	-	VC0395_A0502	-	phosphodiesterase
479	 49.66	0	537000..537293	-	97	147675101	-	VC0395_A0503	-	hypothetical protein
480	 42.72	-1	537334..537855	-	173	147673605	toxS	VC0395_A0504	-	regulatory protein ToxS
481	 45.08	0	537865..538749	-	294	147674563	toxR	VC0395_A0505	-	cholera toxin transcriptional activator
482	 45.75	0	538977..540884	+	635	147674825	htpG	VC0395_A0506	-	heat shock protein 90
483	 46.98	0	541219..541863	+	214	147673458	adk	VC0395_A0507	-	adenylate kinase
484	 47.59	0	541978..542952	+	324	147674210	hemH	VC0395_A0508	-	ferrochelatase
485	 46.21	0	543050..544594	-	514	147675039	tppB	VC0395_A0509	-	putative tripeptide transporter permease
486	 33.33	-2	544755..544877	+	40	147674992	-	VC0395_A0510	-	hypothetical protein
487	 45.38	0	545039..545536	+	165	147675715	rfaH	VC0395_A0511	-	transcriptional activator RfaH
488	 46.43	0	545697..547361	-	554	147673054	asnB	VC0395_A0512	-	asparagine synthetase B
489	 47.51	0	547557..549143	-	528	147673979	-	VC0395_A0513	-	putative glutathione-regulated potassium-efflux system protein KefB
490	 46.91	0	549238..550452	-	404	147673497	nagC	VC0395_A0514	-	N-acetylglucosamine repressor
491	 45.82	0	550455..551591	-	378	147674117	nagA	VC0395_A0515	-	N-acetylglucosamine-6-phosphate deacetylase
492	 49.05	0	552060..553631	+	523	147675085	nagE	VC0395_A0516	-	PTS system, N-acetylglucosamine-specific IIABC component
493	 46.50	0	553879..555549	+	556	147674963	glnS	VC0395_A0517	-	glutaminyl-tRNA synthetase
494	 49.51	0	555714..560579	+	1621	147673505	-	VC0395_A0519	-	hypothetical protein
495	 44.79	0	555830..555925	-	31	147674165	-	VC0395_A0518	-	hypothetical protein
496	 50.82	0	560701..561495	+	264	147674772	truA	VC0395_A0520	-	tRNA pseudouridine synthase A
497	 50.27	0	561669..562595	+	308	147674043	accD	VC0395_A0521	-	acetyl-CoA carboxylase subunit beta
498	 50.95	0	562640..563905	+	421	147673270	folC	VC0395_A0522	-	folylpolyglutamate synthase/dihydrofolate synthase
499	 47.24	0	563906..564502	+	198	147675233	dedD	VC0395_A0523	-	dedD protein
500	 46.75	0	564565..565056	+	163	147673757	-	VC0395_A0524	-	bacteriocin production protein
501	 48.51	0	565089..566603	+	504	147673131	purF	VC0395_A0525	-	amidophosphoribosyltransferase
502	 51.36	0	566730..568055	-	441	147673585	-	VC0395_A0526	-	hypothetical protein
503	 46.99	0	568156..568887	-	243	147675730	rnt	VC0395_A0527	-	ribonuclease T
504	 43.06	-1	568900..569043	-	47	147674575	-	VC0395_A0528	-	hypothetical protein
505	 47.91	0	569104..569988	+	294	147674163	motY	VC0395_A0529	-	sodium-type flagellar protein MotY
506	 48.30	0	570037..570477	-	146	147675139	-	VC0395_A0530	-	hypothetical protein
507	 48.20	0	570637..571053	-	138	147674604	gloA	VC0395_A0531	-	lactoylglutathione lyase
508	 47.04	0	571094..571735	-	213	147674958	nth	VC0395_A0532	-	endonuclease III
509	 51.23	0	571762..572454	-	230	147673085	-	VC0395_A0533	-	SoxR-reducing system protein RsxE
510	 49.37	0	572456..573085	-	209	147675771	-	VC0395_A0534	-	electron transport complex protein RnfG
511	 53.49	+1	573097..574143	-	348	147674988	rnfD	VC0395_A0535	-	electron transport complex protein RnfD
512	 52.93	+1	574143..576464	-	773	147674223	-	VC0395_A0536	-	electron transport complex protein RnfC
513	 52.21	+1	576473..577060	-	195	147674952	-	VC0395_A0537	-	electron transport complex protein RnfB
514	 47.35	0	577060..577701	-	213	147674720	-	VC0395_A0538	-	Na(+)-translocating NADH-quinone reductase subunit E
515	 48.10	0	578523..580553	+	676	147673403	uvrB	VC0395_A0540	-	excinuclease ABC subunit B
516	 49.78	0	580984..582351	+	455	147673171	luxO	VC0395_A0541	-	LuxO repressor protein
517	 46.49	0	582355..582696	+	113	147674934	luxU	VC0395_A0543	-	phosphorelay protein
518	 51.18	0	582685..583575	-	296	147675316	-	VC0395_A0542	-	hypothetical protein
519	 47.76	0	583866..584870	+	334	147674357	moaA	VC0395_A0544	-	molybdenum cofactor biosynthesis protein A
520	 49.71	0	584930..585442	+	170	147673390	moaB	VC0395_A0545	-	molybdenum cofactor biosynthesis protein B
521	 51.55	0	585450..585932	+	160	147675618	moaC	VC0395_A0546	-	molybdenum cofactor biosynthesis protein C
522	 50.41	0	585929..586174	+	81	147674797	moaD	VC0395_A0547	-	molybdopterin synthase small subunit
523	 52.10	+1	586176..586628	+	150	147675319	moaE	VC0395_A0548	-	molybdenum cofactor biosynthesis protein E
524	 47.69	0	586643..587617	-	324	147673523	-	VC0395_A0549	-	GGDEF family protein
525	 48.30	0	587822..588262	+	146	147674350	-	VC0395_A0550	-	CBS domain-containing protein
526	 53.62	+1	588375..590681	+	768	147675004	zntA	VC0395_A0551	-	zinc/cadmium/mercury/lead-transporting ATPase
527	 52.51	+1	591127..591903	+	258	147674560	udp-1	VC0395_A0552	-	uridine phosphorylase
528	 46.42	0	591976..592869	-	297	147675163	-	VC0395_A0553	-	hypothetical protein
529	 48.68	0	593095..595290	-	731	147673338	metG	VC0395_A0554	-	methionyl-tRNA synthetase
530	 51.44	0	595232..596380	+	382	147674192	mrp	VC0395_A0555	-	mrp protein
531	 48.18	0	596530..597189	+	219	147674003	udk	VC0395_A0556	-	uridine kinase
532	 48.20	0	597287..599398	+	703	147674400	asmA	VC0395_A0557	-	asmA protein
533	 49.34	0	599470..600075	-	201	147673401	cobA	VC0395_A0558	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
534	 49.15	0	600161..600628	+	155	147674630	-	VC0395_A0559	-	phosphotyrosine protein phosphatase
535	 48.27	0	600655..601953	-	432	147675389	fadL-1	VC0395_A0560	-	long-chain fatty acid transport protein
536	 45.84	0	602256..603542	-	428	147673128	fadL-2	VC0395_A0561	-	long-chain fatty acid transport protein
537	 47.13	0	603802..604533	-	243	147673825	-	VC0395_A0562	-	hypothetical protein
538	 45.68	0	604526..605092	-	188	147674954	-	VC0395_A0563	-	RNA polymerase sigma factor
539	 48.87	0	605473..606927	+	484	147675487	fadI	VC0395_A0564	-	3-ketoacyl-CoA thiolase
540	 49.65	0	606927..609053	+	708	147673662	fadJ	VC0395_A0565	-	multifunctional fatty acid oxidation complex subunit alpha
541	 50.46	0	609180..609728	+	182	147674582	-	VC0395_A0566	-	hypothetical protein
542	 46.67	0	609805..610704	-	299	147674833	-	VC0395_A0567	-	LysR family transcriptional regulator
543	 45.62	0	610913..612019	+	368	147674250	-	VC0395_A0568	-	response regulator
544	 45.45	0	612189..612320	+	43	147674867	-	VC0395_A0569	-	hypothetical protein
545	 45.36	0	612320..612718	+	132	147673072	-	VC0395_A0570	-	hypothetical protein
546	 48.53	0	612850..613395	+	181	147673655	apt	VC0395_A0571	-	adenine phosphoribosyltransferase
547	 51.71	+1	613414..615492	+	692	147674747	dnaZX	VC0395_A0572	-	DNA polymerase III subunits gamma and tau
548	 47.93	0	615530..615892	+	120	147675358	-	VC0395_A0573	-	hypothetical protein
549	 52.24	+1	615907..616509	+	200	147673522	recR	VC0395_A0574	-	recombination protein RecR
550	 50.79	0	616619..616870	-	83	147674270	-	VC0395_A0575	-	hypothetical protein
551	 47.03	0	617005..617442	+	145	147674670	-	VC0395_A0576	-	hypothetical protein
552	 48.39	0	617536..618279	-	247	147675485	-	VC0395_A0577	-	short chain dehydrogenase
553	 49.02	0	618429..619499	+	356	147674533	-	VC0395_A0578	-	putative periplasmic protease
554	 50.00	0	619624..620691	-	355	147675334	-	VC0395_A0579	-	cysteine synthase/cystathionine beta-synthase family protein
555	 44.51	0	620735..621271	+	178	147675157	-	VC0395_A0580	-	AsnC family transcriptional regulator
556	 48.66	0	621280..622140	-	286	147673197	tesB	VC0395_A0581	-	acyl-CoA thioesterase II
557	 45.83	0	622291..622722	+	143	147674297	-	VC0395_A0582	-	putative lipoprotein
558	 48.84	0	622776..623078	-	100	147674894	-	VC0395_A0583	-	MGMT family protein
559	 48.92	0	623129..623872	+	247	147674789	-	VC0395_A0584	-	hypothetical protein
560	 45.20	0	623959..626040	+	693	147673342	-	VC0395_A0585	-	hypothetical protein
561	 50.58	0	626582..626923	+	113	147673929	-	VC0395_A0586	-	ArsR family transcriptional regulator
562	 48.40	0	627020..628021	+	333	147674514	gap	VC0395_A0587	-	glyceraldehyde-3-phosphate dehydrogenase
563	 54.02	+1	628035..628532	+	165	147675100	-	VC0395_A0588	-	putative phosphatase
564	 50.65	0	628571..629806	+	411	147675684	-	VC0395_A0589	-	putative transporter
47.83	MEAN

3.88	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.